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Researcher
Annemieke Madder
Profile
Projects
Publications
Activities
Awards & Distinctions
Results
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115
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Title (a-z)
Chronological by starting year (new to old)
As
Promotor-spokesperson
01 January 2023 → 31 December 2026
A new photoelectrochemical singlet oxygen-based detection platform for a panel of cancer biomarkers in tissue and liquid biopsies (SOCAN)
Funding: Regional and community funding: Special Research Fund
As
Administrative supervisor
07 September 2023 → 21 September 2025
A combined structure-activity and biophysical investigation of the cyclic lipopeptide tolaasin, the virulence factor causing brown blotch disease
Doctoral researcher: Matthias Vanheede
10 August 2021 → 21 September 2025
Antibody-oligonucleotide conjugation for cellular delivery of oligonucleotides
Doctoral researcher: Jan Heinrich Meffert
19 January 2018 → 17 December 2021
A Tale of Furan and Nucleic Acids: The exploration of furan chemistry as a versatile tool for targeting oligonucleotides
Doctoral researcher: Enrico Cadoni
13 January 2025 → 21 September 2025
Crosslinked G-quadruplexes as nucleic acid decoys for protein interaction studies
Doctoral researcher: Hanne Moerman
19 September 2022 → 21 September 2025
Crosslinking Aptamers for Covalent Protein Targeting
Doctoral researcher: Gertjan Colpaert
16 October 2024 → 21 September 2025
Cyclodextrin-Nanobody Conjugates: A Peptide Delivery System to Harness the Anticancer Potential of Cyclic Lipopeptides
Doctoral researcher: Maylin Fernanda Romero Herdoiza
21 February 2024 → 21 September 2025
Design and synthesis of peptide nucleic acid probes for nucleic acid biomarker detection with enhanced selectivity
Doctoral researcher: Batuhan Baytekin
21 May 2024 → 21 September 2025
Design of capture and detection probes for photo-electrochemical detection of cancer nucleic acid biomarkers
Doctoral researcher: Sudip Ghosh
28 September 2016 → 31 August 2021
Developing Furan and Triazolinedione Chemistries for Site-Selective Protein Modification
Doctoral researcher: Klaas Decoene
13 January 2023 → 22 September 2024
Development of new bioconjugation methods for protein and nucleic acid conjugates
Doctoral researcher: Ahmet Colaker
05 September 2012 → 24 November 2016
Doctoral project Abhishek Iyer
Doctoral researcher: Abhishek Iyer
31 October 2013 → 26 October 2018
Doctoral project Ana Margarida Dias Carvalho Da Rocha
Doctoral researcher: Ana Margarida Dias Carvalho Da Rocha
04 November 2019 → 22 September 2024
Doctoral project Dorien Aerssens
Doctoral researcher: Dorien Aerssens
01 October 2014 → 22 February 2019
Doctoral project Dorien Van Lysebetten
Doctoral researcher: Dorien Van Lysebetten
01 October 2013 → 18 May 2018
Doctoral project Eirini Antonatou
Doctoral researcher: Eirini Antonatou
06 December 2010 → 22 June 2016
Doctoral project Ellen Gyssels
Doctoral researcher: Ellen Gyssels
04 November 2013 → 22 September 2017
Doctoral project Eva Marina Llamas Garcinuño
Doctoral researcher: Eva Marina Llamas Garcinuño
27 September 2013 → 24 February 2014
Doctoral project Fabiana Cavallini
Doctoral researcher: Fabiana Cavallini
28 August 2019 → 20 September 2020
Doctoral project Jan Elskens
Doctoral researcher: Jan Elskens
21 August 2009 → 24 March 2014
Doctoral project Kurt Hoogewijs
Doctoral researcher: Kurt Hoogewijs
17 October 2013 → 30 November 2018
Doctoral project Lars Verdonck
Doctoral researcher: Lars Verdonck
27 August 2009 → 24 April 2014
Doctoral project Lieselot Carrette
Doctoral researcher: Lieselot Carrette
16 June 2011 → 23 September 2012
Doctoral project Mahmoud Nabil Mahmoud Yousif
Doctoral researcher: Mahmoud Nabil Mahmoud Yousif
22 August 2008 → 25 June 2012
Doctoral project Marieke Op de Beeck
Doctoral researcher: Marieke Op de Beeck
24 August 2012 → 19 December 2016
Doctoral project Nathalie De Laet
Doctoral researcher: Nathalie De Laet
09 October 2008 → 05 December 2011
Doctoral project Sara Figaroli
Doctoral researcher: Sara Figaroli
27 August 2008 → 19 December 2014
Doctoral project Vicky Gheerardijn
Doctoral researcher: Vicky Gheerardijn
16 September 2013 → 19 February 2020
Doctoral project Vincent Ornelis
Doctoral researcher: Vincent Ornelis
18 October 2013 → 22 December 2017
Doctoral project Willem Vannecke
Doctoral researcher: Willem Vannecke
04 November 2010 → 19 December 2014
Doctoral project Yara Ruiz Garcia
Doctoral researcher: Yara Ruiz Garcia
13 September 2018 → 22 September 2022
Enlarging the toolbox for cysteine selective protein modification
Doctoral researcher: Ewout De Geyter
15 September 2016 → 30 September 2021
Exploitation of nucleic acid crosslinking approaches for improved RNA capture and aptamer stabilization
Doctoral researcher: Joke Elskens
13 October 2020 → 10 October 2024
Exploiting the covalent triazolinedione and furan chemistry toolbox for labelling, crosslinking and degradation of proteins
Doctoral researcher: Laure Tack
13 August 2021 → 21 September 2025
Furan and porphyrin containing crosslinking ligands for covalent stabilisation of G quadruplexes as cell-permeable anti-cancer aptamers
Doctoral researcher: Jack Barr
05 October 2017 → 25 November 2021
GlyConnect: exploring glycan-based conjugation chemistries for GlycoDelete proteins
Doctoral researcher: Karel Thooft
22 November 2021 → 25 September 2022
Host microRNAs in SARS-Coronavirus 2 infection: from pathophysiology to treatment
Doctoral researcher: Kato Pollet
21 June 2021 → 21 September 2025
Investigation of the Biogelator platform for the controlled delivery of biological therapeutics
Doctoral researcher: Hue Vu
31 January 2022 → 22 September 2024
In vitro assay development for ON spatial conformer analysis and isolation
Doctoral researcher: Monica Fresta
18 May 2023 → 21 September 2025
Plaatsspecifiek modificatie van proteïnen voor vaccin ontwikkeling
Doctoral researcher: Tamara Rojas-Núñez
09 September 2021 → 21 September 2025
Synthesis of modified PNA probes for sequence-selective G-quadruplex photoalkylation
Doctoral researcher: Lessandro De Paepe
As
PhD Supervisor
19 September 2016 → 21 May 2021
An integrated approach towards increasing aptamer robustness by incorporation of an imidazolium modified thymine
Doctoral researcher: Anne-Mare de Vries
01 February 2019 → 20 September 2022
Creating clarity in the structural diversity of <i>Pseudomonas</i> lipopeptides and in their associated membrane perturbing effect
Doctoral researcher: Vic De Roo
15 September 2023 → 21 September 2025
Development of a photoelectrochemical singlet oxygen-based platform for the rapid detection of DNA and RNA biomarkers
Doctoral researcher: Thijs Van der Snickt
24 August 2011 → 23 November 2015
Doctoral project Matthias De Vleeschouwer
Doctoral researcher: Matthias De Vleeschouwer
03 September 2013 → 12 February 2019
Doctoral project Steven Martens
Doctoral researcher: Steven Martens
23 September 2014 → 21 April 2015
Doctoral project Tim Van Kersavond
Doctoral researcher: Tim Van Kersavond
24 September 2024 → 21 September 2025
Exploration of the importance of acyl chains for the bioactivity of Cyclic Lipodepsipeptides from Pseudomonas bacteria
Doctoral researcher: Xinyu Qian
22 September 2016 → 01 April 2021
<i>Pseudomonas</i> Cyclic Lipopeptides as Cytotoxic Agents for Cancer Cells: Structure-Function Analysis
Doctoral researcher: Yentl Verleysen
04 June 2018 → 08 September 2022
Sequence-defined macromolecules: From linear to precise three-dimensional architectures
Doctoral researcher: Melissa Reith
31 January 2022 → 21 September 2025
Structure, Function and Interaction of Tolaasin
Doctoral researcher: Durga Prasad .
07 September 2020 → 27 September 2024
Unravelling the secrets of aptamer−small molecule complexes with NMR spectroscopy - the TESS.1 aptamer case
Doctoral researcher: Sofie Schellinck
As
Promotor
01 November 2023 → 31 October 2027
A combined structure-activity and biophysical investigation of the cyclic lipopeptide tolaasin, the virulence factor causing brown blotch disease
Fellow: Matthias Vanheede
Funding: Research Foundation - Flanders (FWO)
01 October 2023 → 31 October 2023
A combined structure-activity and biophysical investigation of the cyclic lipopeptide tolaasin, the virulence factor causing brown blotch disease
Fellow: Matthias Vanheede
Funding: Regional and community funding: Special Research Fund
01 October 2024 → 30 September 2025
Antibody-oligonucleotide conjugation for cellular delivery of oligonucleotides
Fellow: Jan Heinrich Meffert
Funding: Regional and community funding: Special Research Fund
01 January 2021 → 30 June 2021
A Tale of Furan and Nucleic Acids: A journey through the exploration of furan chemistry as a versatile tool for nucleic acid targeting.
Fellow: Enrico Cadoni
Funding: Regional and community funding: Special Research Fund
01 January 2009 → 30 December 2011
Biomimetic furan oxidation: a "Trojan Horse" strategy for the formation of covalent protein / protein complexes.
Funding: Research Foundation - Flanders (FWO)
01 October 2018 → 30 September 2022
Chemical and enzymatic bioconjugation for the site-specific decoration of proteins with therapeutic property enhancing moieties
Fellow: Ewout De Geyter
Funding: Regional and community funding: Special Research Fund
01 October 2023 → 30 September 2025
Cofunding core facility - NMR Expertise Centre
Funding: Regional and community funding: Special Research Fund
01 October 2022 → 30 September 2025
Conformationally locked G4-decoy oligonucleotides for selective telomerase inhibition and development of a nucleic acid-based anti-telomerase PROTAC strategy
Fellow: Enrico Cadoni
Funding: Research Foundation - Flanders (FWO)
01 November 2022 → 31 October 2026
Crosslinking Aptamers for Covalent Protein Targeting
Fellow: Gertjan Colpaert
Funding: Research Foundation - Flanders (FWO)
01 October 2022 → 31 October 2022
Crosslinking Aptamers for Covalent Protein Targeting
Fellow: Gertjan Colpaert
Funding: Regional and community funding: Special Research Fund
01 October 2015 → 28 February 2019
Design and synthesis of cyclic peptides with improved therapeutic potential by molecular grafting of peptide loop sequences onto steroid scaffolds
Fellow: Dorien Van Lysebetten
Funding: Regional and community funding: Special Research Fund
01 January 2018 → 31 December 2018
Design, synthesis and screening of tRNA stabilising and antigenomic compounds for the treatment of mitochondrial diseases.
Fellow: Kurt Hoogewijs
Funding: Research Foundation - Flanders (FWO)
01 April 2017 → 31 March 2020
Design, synthesis and screening of tRNA stabilising and antigenomic compounds for the treatment of mitochondrial diseases.
Fellow: Kurt Hoogewijs
Funding: Research Foundation - Flanders (FWO)
01 December 2009 → 31 May 2011
Detection of DNA-peptide interactions via crosslinking: versatile use of the furan oxidation methodology
Funding: Regional and community funding: Special Research Fund
01 October 2009 → 30 September 2013
Detection of DNA-peptide interactions via crosslinking: versatile use of the furan oxidation methodology.
Fellow: Lieselot Carrette
Funding: Regional and community funding: Special Research Fund, Research Foundation - Flanders (FWO)
16 June 2025 → 15 December 2025
Development of a Hydrogel Platform for Controlled Delivery of Biologicals
Fellow: Hue Vu
Funding: Regional and community funding: Special Research Fund
01 January 2007 → 31 December 2009
Development of new types of DNA-binding peptides
Funding: Research Foundation - Flanders (FWO)
01 September 2016 → 31 August 2019
EnergyEfficiency (EnEf)
Funding: European funding: various
01 November 2019 → 28 October 2023
Engineering and study of peptide-based hydrogels for the sustained release of therapeutic proteins.
Fellow: Dorien Aerssens
Funding: Research Foundation - Flanders (FWO)
01 March 2015 → 28 February 2017
Exploring the chemical potential of Therapeutic Alpha Antibodies
Funding: Regional and community funding: IWT/VLAIO
01 October 2024 → 30 September 2025
Furan and porphyrin containing crosslinking ligands for covalent stabilisation of G quadruplexes as cell-permeable anti-cancer aptamers
Fellow: Jack Barr
Funding: Regional and community funding: Special Research Fund
01 January 2016 → 31 December 2019
Furan and triazolinedion based strategies for site-specific labeling, conjugation and cross-linking of native and recombinant proteins.
Funding: Research Foundation - Flanders (FWO)
01 March 2017 → 29 February 2020
Furan-based Artificial DNA Anchoring Systems
Fellow: Alex Manicardi
Funding: Research Foundation - Flanders (FWO)
01 October 2015 → 30 September 2017
Furan crosslinking for improved sensitivity in diagnostic assays
Funding: Regional and community funding: Industrial Research Fund
01 November 2020 → 31 October 2024
Furan-modified peptide and protein ligands for covalent trapping onto cell-surface receptors
Fellow: Laure Tack
Funding: Research Foundation - Flanders (FWO)
01 January 2024 → 31 December 2025
Hooked to the opioid receptor: covalent ligands as novel tools to study mu opioid receptor signaling
Funding: Regional and community funding: Special Research Fund
01 December 2019 → 31 January 2021
MEFuran
Funding: Regional and community funding: Industrial Research Fund
01 January 2019 → 31 December 2022
MEMCLIP: A comprehensive chemical-biology approach to understand the bioactivity of Pseudomonas cyclic lipopeptides on eukaryotic membranes
Funding: Regional and community funding: Special Research Fund
01 January 2011 → 31 December 2013
Microwave assisted synthesis of peptide dipodale steroids as artificial transcription factors with increased bioavailability
Funding: Research Foundation - Flanders (FWO)
01 January 2019 → 31 December 2022
MOLECULAR DESIGN OF ‘FROZEN’ APTAMERS: Aptamers with enhanced properties by covalent and non-covalent stabilization using functionalized nucleotides: a combined modelling, NMR and electrochemistry approach
Funding: Research Foundation - Flanders (FWO)
01 January 2017 → 31 August 2021
Molecular Tools for Nucleic Acid Manipulation for Biological Intervention
Funding: European funding: framework programme, Regional and community funding: Special Research Fund
01 July 2011 → 30 April 2014
Novel cross-link technologies to probe peptied-ligand/receptor interactions
Funding: Regional and community funding: Special Research Fund
01 January 2021 → 30 June 2025
Oligonucleotides for Medical Applications
Funding: European funding: framework programme, Regional and community funding: Special Research Fund
01 October 2011 → 30 June 2016
Optimization of furan-oxidation crosslinking methodology for new applications in nucleic acid crosslinking
Fellow: Ellen Gyssels
Funding: Regional and community funding: IWT/VLAIO
01 February 2022 → 29 February 2024
Proprietary “Next Generation Maleimide Chemistry” for Bioconjugation
Funding: Regional and community funding: Industrial Research Fund
01 January 2015 → 31 December 2018
Rational design of a receptor for the detection of the mycotoxin beauvericin and enniatin A, A1, B, B1
Fellow: Vincent Ornelis
Funding: Regional and community funding: IWT/VLAIO
01 July 2010 → 30 June 2015
Recognition and cleavage of Biological Phosphates, Molecular Recognition, Mechanism and Biomedical Applications
Funding: European funding: framework programme
01 November 2020 → 30 November 2021
SANI: Generation of Stable, Addressable multi-Nanobody Immunoarrays through oriented covalent immobilisation
Funding: Regional and community funding: Industrial Research Fund
01 October 2020 → 30 September 2023
Synthesis and Optimization Strategies of Bioengineered Cyclic Peptides for Improving Therapeutic Drug Profiles
Fellow: Atiruj Theppawong
Funding: Research Foundation - Flanders (FWO)
01 January 2018 → 21 July 2021
Synthesis of furan-modified nucleic acid probes for the development of new RNA target identification strategies.
Fellow: Joke Elskens
Funding: Research Foundation - Flanders (FWO)
01 November 2021 → 31 October 2025
Synthesis of modified PNA probes for sequence-selective G-quadruplex photoalkylation.
Fellow: Lessandro De Paepe
Funding: Research Foundation - Flanders (FWO)
01 January 2013 → 31 October 2018
Synthetic Antibodies as innovative receptors in sample pretreatment and diagnostics applied to emerging toxic cyclic depsipeptides in the food chain
Funding: Regional and community funding: Special Research Fund
01 February 2020 → 30 September 2024
Synthetic antibodies (SynAbs) for detection of cyclodepsipeptide toxins in food
Funding: Regional and community funding: Industrial Research Fund
01 April 2023 → 31 January 2025
Synthetic antibody (SynAb) receptors for the detection and isolation of cyclic depsipeptide (CDP) toxins in food samples.
Fellow: Ricardo Miguel Ribeiro Magalhães Lopes
Funding: European funding: framework programme, Regional and community funding: Special Research Fund
01 October 2013 → 30 September 2017
Target identification for orphan peptides through furan-oxidation based cross-linking for application in cancer research
Fellow: Willem Vannecke
Funding: Regional and community funding: Special Research Fund
01 January 2013 → 31 December 2016
The Singlet Oxygen Strategy: sustainable oxidation procedures for applications in material science, synthesis, wastewater treatment, diagnostics and therapeutics
Funding: European funding: framework programme
01 October 2012 → 30 September 2016
Visible light induced nucleic acid crosslinking: development of self-activatable oligonucleotide probes
Fellow: Nathalie De Laet
Funding: Regional and community funding: IWT/VLAIO
As
Copromotor
03 July 2012 → 31 August 2017
3D Structural Platform for Chemical Excellence.
Funding: Research Foundation - Flanders (FWO)
01 May 2024 → 30 April 2028
A MALDI-TOF/TOF MS instrument for (bio)polymer characterization and imaging.
Funding: Research Foundation - Flanders (FWO)
15 July 2021 → 30 June 2025
BioGelator for local immunotherapy
Funding: Regional and community funding: Industrial Research Fund
01 January 2007 → 31 October 2012
Development of methods for enrichment and analysis for trace analysis of endocrine disrupting chemicals in water samples mediated by synthetic selective receptors
Funding: Regional and community funding: Special Research Fund
01 January 2008 → 30 December 2013
Development of synthetic selective receptors for the enrichment and trace determination of endocrine disrupting chemicals in water samples
Funding: Research Foundation - Flanders (FWO)
01 January 2009 → 31 December 2012
Evaluation of new types of stationary phases and column dimensions for the development of highly efficiënt and generic supercritical fluid chromatography
Funding: Research Foundation - Flanders (FWO)
01 June 2015 → 31 May 2017
From multi-functionalized oligomers to sequence controlled polymers: towards unprecedented control of synthetic macromolecules
Funding: Regional and community funding: Special Research Fund
01 January 2015 → 31 December 2020
From multi-functionalized oligomers to sequence controlled polymers: towards unprecedented control of synthetic macromolecules
Funding: Research Foundation - Flanders (FWO)
01 June 2018 → 31 May 2020
LC-'Single Quadrupole MS' for analysis of reaction mixtures and organic compounds with determination of their molecular mass and purity.
Funding: Regional and community funding: Special Research Fund
01 October 2017 → 30 September 2021
Molecular design of imidazole enhanced nucleic acid aptamers and DNAzymes based upon a modeling-synthesis-analysis toolbox
Funding: Regional and community funding: Special Research Fund
01 January 2019 → 31 December 2022
Molecular engineering of peptide-based hydrogels for sustained drug release
Funding: Research Foundation - Flanders (FWO)
01 May 2024 → 30 April 2028
ReHiFiNMR - Rejuvenation of High-Field NMR equipment for the continued and enhanced characterization of complex molecular architectures and their interactions
Funding: Research Foundation - Flanders (FWO)
01 January 2013 → 31 December 2018
Reptide hydrogels comprising beta-amino acids
Funding: Research Foundation - Flanders (FWO)
15 December 2022 → 14 December 2024
Routine NMR Analysis Equipment for Small Molecule Characterisation.
Funding: Regional and community funding: Special Research Fund
01 May 2020 → 30 April 2024
Stimulated emission depletion microscopy (STED): Nanoscopy for innovative research in the life sciences
Funding: Research Foundation - Flanders (FWO)
01 January 2010 → 31 December 2015
Structure-function study with NMR of and insight into the supramolecular assembly of lipopeptide antibiotics from the viscosin group.
Funding: Research Foundation - Flanders (FWO)