Complementary use of ribosome profiling and positional proteomics for mapping the translation initiation and nascent protein modification landscape in human cell lines

Preparative and analytical ultracentrifugation to aid integrative, multi-omics studies.

Proteogenomic-assisted exploration of the molecular mechanisms underlying Salmonella infection

Riboproteogenomics in aid of bacterial pathogen/host interaction studies

The study of N-terminal protein variants, their stability and localization by means of ribosome profiling and positional proteomics

Translational control in infection biology: the role of sORFs in Salmonella pathogenesis. 

Unraveling the heterogeneous nature of host/pathogen encounters and their role in bacterial pathogenesis.

A MALDI-8020 mass spectrometer for peptide and protein analysis.

Development of C-terminal peptide-based proteome-analytical strategies and the extensive mapping of the granzyme substrate-repertoire

Identification of in planta secreted fungal effectors and characterization of their interacting tomato proteins to ameliorate arbuscular mycorrhiza-based agriculture

Mapping the tomato protein network exploited by type III effectors involved in bacterial wilt

Protein interplay during the establishment of arbuscular mycorrhiza: revealing the function of tomato root proteins interacting with fungal plant effectors

Towards molecular insights into the arbuscular mycorrhizal fungal-plant interface for improved tomato yield upon drought.

W&T scholarship Elena Speranskaya

Granzyme-mediated cell-targeted and antiviral methods-of-action: a targeted proteomic analysis