Research Explorer

Your browser does not support JavaScript or JavaScript is not enabled. Without JavaScript some functions of this webapplication may be disabled or cause error messages. To enable JavaScript, please consult the manual of your browser or contact your system administrator.

Researcher

Zhen Li

Awards & Distinctions

43 Results

2023

Chromosome-level genomes of three key Allium crops and their trait evolution

Fei HaoXue LiuBotong ZhouZunzhe TianLina ZhouHang ZongJiyan QiJuan HeYongting ZhangPeng Zeng et al.

A1 Journal Article in NATURE GENETICS

Diploid and tetraploid genomes of Acorus and the evolution of monocots

Liang MaKe-Wei LiuZhen LiYu-Yun HsiaoYiying QiTao FuGuang-Da TangDiyang ZhangWei-Hong SunDing-Kun Liu et al.

A1 Journal Article in NATURE COMMUNICATIONS

Editorial : omics-driven crop improvement for stress tolerance

Weicong QiJian ChenYi HanZhen LiXiaofeng SuFreddy Kuok San Yeo

Editorial material

Inference of ancient polyploidy using transcriptome data

Jia LiYves Van de PeerZhen Li

Bookchapter in Polyploidy : methods and protocols

Revisiting ancient polyploidy in leptosporangiate ferns

Hengchi ChenYuhan FangArthur ZwaenepoelSanwen HuangYves Van de PeerZhen Li

A1 Journal Article in NEW PHYTOLOGIST

The Saururus chinensis genome provides insights into the evolution of pollination strategies and herbaceousness in magnoliids

Jia‐Yu XueZhen LiShuai‐Ya HuShu-Min KaoTao ZhaoJie‐Yu WangYue WangMin ChenYichun QiuHai‐Yun Fan et al.

A1 Journal Article in PLANT JOURNAL

The genome of the king protea, Protea cynaroides

Jiyang ChangTuan A. DuongCassandra SchoemanXiao MaDanielle RoodtNigel BarkerZhen LiYves Van de PeerEshchar Mizrachi

A1 Journal Article in PLANT JOURNAL

Updated phylogeny and protein structure predictions revise the hypothesis on the origin of MADS-box transcription factors in land plants

Yichun QiuZhen LiDirk WaltherClaudia Köhler

A1 Journal Article in MOLECULAR BIOLOGY AND EVOLUTION

2022

Divergence of active site motifs among different classes of Populus glutaredoxins results in substrate switches

Hui XuZhen LiPeng‐Fei JiangLi ZhaoChang QuYves Van de PeerYan‐Jing LiuQing‐Yin Zeng

A1 Journal Article in PLANT JOURNAL

Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy

Ming-He LiKe-Wei LiuZhen LiHsiang-Chia LuQin-Liang YeDiyang ZhangJie-Yu WangYu-Feng LiZhi-Ming ZhongXuedie Liu et al.

A1 Journal Article in NATURE PLANTS

Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants

Jia‐Yu XueShanshan DongMing‐Qiang WangTian‐Qiang SongGuang‐Can ZhouZhen LiYves Van de PeerZhu‐Qing ShaoWei WangMin Chen et al.

A1 Journal Article in JOURNAL OF SYSTEMATICS AND EVOLUTION

The Larix kaempferi genome reveals new insights into wood properties

Chao SunYun‐hui XieZhen LiYan‐jing LiuXiao‐mei SunJing‐jing LiWei‐peng QuanQing‐yin ZengYves Van de PeerShou‐gong Zhang

A1 Journal Article in JOURNAL OF INTEGRATIVE PLANT BIOLOGY

The genome of Corydalis reveals the evolution of benzylisoquinoline alkaloid biosynthesis in Ranunculales

Zhichao XuZhen LiFengming RenRanran GaoZhe WangJinlan ZhangTao ZhaoXiao MaXiangdong PuTianyi Xin et al.

A1 Journal Article in PLANT JOURNAL

The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences

Yuhan FangXing QinQinggang LiaoRan DuXizhi LuoQian ZhouZhen LiHengchi ChenWanting JinYaning Yuan et al.

A1 Journal Article in NATURE PLANTS

2021

A non-duplicated magnoliid genome

Zhen LiYves Van de Peer

Editorial material

Haplotype-resolved genome assembly and allele-specific gene expression in cultivated ginger

Shi-Ping ChengKai-Hua JiaHui LiuRen-Gang ZhangZhi-Chao LiShan-Shan ZhouTian-Le ShiAi-Chu MaCong-Wen YuChan Gao et al.

A1 Journal Article in HORTICULTURE RESEARCH

The Cymbidium genome reveals the evolution of unique morphological traits

Ye AiZhen LiWei-Hong SunJuan ChenDiyang ZhangLiang MaQing-Hua ZhangMing-Kun ChenQing-Dong ZhengJiang-Feng Liu et al.

A1 Journal Article in HORTICULTURE RESEARCH

The Euscaphis japonica genome and the evolution of malvids

Wei‐Hong SunZhen LiShuang XiangLin NiDiyang ZhangDe‐Qiang ChenMeng‐Yuan QiuQi‐Gong ZhangLin XiaoLe Din et al.

A1 Journal Article in PLANT JOURNAL

The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts

Tao WanZhiming LiuIlia J. LeitchHaiping XinGillian Maggs-KöllingYanbing GongZhen LiEugene MaraisYiying LiaoCan Dai et al.

A1 Journal Article in NATURE COMMUNICATIONS

Whole-genome microsynteny-based phylogeny of angiosperms

Tao ZhaoArthur ZwaenepoelJia-Yu XueShu-Min KaoZhen LiM. Eric SchranzYves Van de Peer

A1 Journal Article in NATURE COMMUNICATIONS

Wolfberry genomes and the evolution of Lycium (Solanaceae)

You-Long CaoYan-long LiYun-Fang FanZhen LiKouki YoshidaJie-Yu WangXiao-Kai MaNing WangNobutaka MitsudaToshihisa Kotake et al.

A1 Journal Article in COMMUNICATIONS BIOLOGY

2020

'Winter is coming' : how did polyploid plants survive?

Zhen LiYves Van de Peer

Editorial material

First draft genome assembly of the desert locust, Schistocerca gregaria

Heleen VerlindenLieven SterckJia LiZhen LiAnna YsselYannick GansemansRik VerdonckMichiel HoltofHojun SongSpencer T. Behmer et al.

A2 Journal Article in F1000RESEARCH

Genomics of clinal local adaptation in Pinus sylvestris under continuous environmental and spatial genetic setting

Jaakko S. TyrmiJaana VuoskuJuan J. AcostaZhen LiLieven SterckMaria T. CerveraOuti SavolainenTanja Pyhäjärvi

A1 Journal Article in G3-GENES GENOMES GENETICS

Molecular study of drought response in the Mediterranean conifer Pinus Pinaster Ait. : differential transcriptomic profiling reveals constitutive water deficit‐independent drought tolerance mechanisms

Nuria de MaríaMaría Ángeles GuevaraPedro PerdigueroMaría Dolores VélezJosé Antonio CabezasMiriam López‐HinojosaZhen LiLuís Manuel DíazAlberto PizarroJosé Antonio Mancha et al.

A1 Journal Article in ECOLOGY AND EVOLUTION

The Litsea genome and the evolution of the laurel family

Yi-Cun ChenZhen LiYun-Xiao ZhaoMing GaoJie-Yu WangKe-Wei LiuXue WangLi-Wen WuYu-Lian JiaoZi-Long Xu et al.

A1 Journal Article in NATURE COMMUNICATIONS

The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants

Linzhou LiSibo WangHongli WangSunil Kumar SahuBirger MarinHaoyuan LiYan XuHongping LiangZhen LiShifeng Cheng et al.

A1 Journal Article in NATURE ECOLOGY & EVOLUTION

The honeysuckle genome provides insight into the molecular mechanism of carotenoid metabolism underlying dynamic flower coloration

Xiangdong PuZhen LiYa TianRanran GaoLijun HaoYating HuChunnian HeWei SunMeimei XuReuben J. Peters et al.

A1 Journal Article in NEW PHYTOLOGIST

The water lily genome and the early evolution of flowering plants

Liangsheng ZhangFei ChenXingtan ZhangZhen LiYiyong ZhaoRolf LohausXiaojun ChangWei DongSimon YW HoXing Liu et al.

A1 Journal Article in NATURE

2019

Finding evidence for whole genome duplications : a reappraisal

Arthur ZwaenepoelZhen LiRolf LohausYves Van de Peer

A1 Journal Article in MOLECULAR PLANT

Loss of wood formation genes in monocot genomes

Danielle RoodtZhen LiYves Van de PeerEshchar Mizrachi

A1 Journal Article in GENOME BIOLOGY AND EVOLUTION

2018

A genome for gnetophytes and early evolution of seed plants

Tao WanZhi-Ming LiuLing-Fei LiAndrew R LeitchIlia J LeitchRolf LohausZhong-Jian LiuHai-Ping XinYan-Bing GongYang Liu et al.

A1 Journal Article in NATURE PLANTS

The study of plant genome evolution by means of phylogenomics

Zhen LiYves Van de Peer

2017

Conservation of nonsense-mediated mRNA decay complex components throughout eukaryotic evolution

Barry CausierZhen LiRiet De SmetJames PB LloydYves Van de PeerBrendan Davies

A1 Journal Article in SCIENTIFIC REPORTS

Contrasting rates of molecular evolution and patterns of selection among gymnosperms and flowering plants

Amanda R De La TorreZhen LiYves Van de PeerPär K Ingvarsson

A1 Journal Article in MOLECULAR BIOLOGY AND EVOLUTION

Coordinated functional divergence of genes after genome duplication in Arabidopsis thaliana

Riet De SmetEhsan SabaghianZhen LiYvan SaeysYves Van de Peer

A1 Journal Article in PLANT CELL

Genome of wild olive and the evolution of oil biosynthesis

Turgay UnverZhangyan WuLieven SterckMine TurktasRolf LohausZhen LiMing YangLijuan HeTianquan DengFrancisco Javier Escalante et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reciprocally retained genes in the angiosperm lineage show the hallmarks of dosage balance sensitivity

Setareh TasdighianMichiel Van BelZhen LiYves Van de PeerLorenzo Carretero-PauletSteven Maere

A1 Journal Article in PLANT CELL

Single-copy genes as molecular markers for phylogenomic studies in seed plants

Zhen LiAmanda R De La TorreLieven SterckFrancisco M CánovasConcepción AvilaIrene MerinoJose Antonio CabezasMaría Teresa CerveraPar K IngvarssonYves Van de Peer

A1 Journal Article in GENOME BIOLOGY AND EVOLUTION

The Apostasia genome and the evolution of orchids

Guo-Qiang ZhangKe-Wei LiuZhen LiRolf LohausYu-Yun HsiaoShan-Ce NiuJie-Yu WangYao-Cheng LinQing XuLi-Jun Chen et al.

A1 Journal Article in NATURE

The gene expression landscape of pine seedling tissues

Rafael A CañasZhen LiM Belén PascualVanessa Castro-RodríguezConcepción ÁvilaLieven SterckYves Van de PeerFrancisco M Cánovas

A1 Journal Article in PLANT JOURNAL

2016

Gene duplicability of core genes is highly consistent across all angiosperms

Zhen LiJonas DefoortSetareh TasdighianSteven MaereYves Van de PeerRiet De Smet

A1 Journal Article in PLANT CELL

Lack of GLYCOLATE OXIDASE1, but not GLYCOLATE OXIDASE2, attenuates the photorespiratory phenotype of CATALASE2-deficient Arabidopsis

Pavel KerchevCezary WaszczakAleksandra LewandowskaPatrick WillemsAlexey ShapiguzovZhen LiSaleh AlseekhPer MühlenbockFrank HoeberichtsJingjing Huang et al.

A1 Journal Article in PLANT PHYSIOLOGY