Research Explorer

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Researcher

Stefanie De Bodt

30 Results

2015

The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining

Dora SzakonyiSofie Van LandeghemKatja BaerenfallerLieven BaeyensJonas BlommeRubén Casanova-SáezStefanie De BodtDavid Esteve-BrunaFabio FioraniNathalie Gonzalez Sanchez et al.

A2 Journal Article in CURRENT PLANT BIOLOGY

2014

ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development

Liesbeth VercruyssenAurine VerkestNathalie Gonzalez SanchezKen HeyndrickxDominique EeckhoutSoon-Ki HanTeddy JéguRafal ArchackiJelle Van LeeneMegan Andriankaja et al.

A1 Journal Article in PLANT CELL

Gibberellins and DELLAs: central nodes in growth regulatory networks

Hannes ClaeysStefanie De BodtDirk Inzé

A1 Journal Article in TRENDS IN PLANT SCIENCE

Transcriptional coordination between leaf cell differentiation and chloroplast development established by TCP20 and the subgroup Ib bHLH transcription factors

Megan AndriankajaSelahattin DanismanLorin MignoletHannes ClaeysIrina KochankeMattias VermeerschLiesbeth De MildeStefanie De BodtVeronique StormeAleksandra Skirycz et al.

A1 Journal Article in PLANT MOLECULAR BIOLOGY

2013

A guide to CORNET for the construction of coexpression and protein-protein interaction networks

Stefanie De BodtDirk Inzé

Bookchapter in Jasmonate signaling : methods and protocols

ETHYLENE RESPONSE FACTOR6 acts as a central regulator of leaf growth under water-limiting conditions in Arabidopsis

Marieke DuboisAleksandra SkiryczHannes ClaeysKatrien MaleuxStijn DhondtStefanie De BodtRobin Vanden BosscheLiesbeth De MildeTakeshi YoshizumiMinami Matsui et al.

A1 Journal Article in PLANT PHYSIOLOGY

Molecular and physiological analysis of growth-limiting drought stress in Brachypodium distachyon leaves

Wim VerelstEdoardo BertoliniStefanie De BodtKlaas VandepoeleMarlies DemeulenaereMario Enrico PéDirk Inzé

A1 Journal Article in MOLECULAR PLANT

The potential of text mining in data integration and network biology for plant research : a case study on Arabidopsis

Sofie Van LandeghemStefanie De BodtZuzanna DrebertDirk InzéYves Van de Peer

A1 Journal Article in PLANT CELL

2012

CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations

Stefanie De BodtJens HollunderHilde NelissenNick MeulemeesterDirk Inzé

A1 Journal Article in NEW PHYTOLOGIST

Exit from proliferation during leaf development in Arabidopsis thaliana: a not-so-gradual process

Megan AndriankajaStijn DhondtStefanie De BodtHannes VanhaerenFrederik CoppensLiesbeth De MildePer MühlenbockAleksandra SkiryczNathalie Gonzalez SanchezGerrit Beemster et al.

A1 Journal Article in DEVELOPMENTAL CELL

2011

A Reciprocal N-15-labeling proteomic analysis of expanding arabidopsis leaves subjected to osmotic stress indicates importance of mitochondria in preserving plastid functions

Aleksandra SkiryczSamy MemmiStefanie De BodtKatrien MaleuxToshihiro ObataAlisdai R FernieBart DevreeseDirk Inzé

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Pause-and-stop: the effects of osmotic stress on cell proliferation during early leaf development in Arabidopsis and a role for ethylene signaling in cell cycle arrest

Aleksandra SkiryczHannes ClaeysStefanie De BodtAkira OikawaShoko ShinodaMegan AndriankajaKatrien MaleuxNubia Barbosa EloyFrederik CoppensSang-Dong Yoo et al.

A1 Journal Article in PLANT CELL

Transcriptional and post-transcriptional regulation of a NAC1 transcription factor in Medicago truncatula roots

Katrien D'haeseleerGriet Den HerderCarole LaffontJulie PletVirginie MortierChristine Lelandais-BriereStefanie De BodtAnnick De KeyserMartin CrespiMarcella Holsters et al.

A1 Journal Article in NEW PHYTOLOGIST

2010

CORNET: a user-friendly tool for data mining and integration

Stefanie De BodtDiana Angelica Carvajal BernalJens HollunderJoost Van den CruyceSara MovahediDirk Inzé

A1 Journal Article in PLANT PHYSIOLOGY

Comparison of developmental and stress-induced nodule senescence in Medicago truncatula

Juan Carlos Pérez GuerraGriet CoussensAnnick De KeyserRiet De RyckeStefanie De BodtWillem Van De VeldeSofie GoormachtigMarcella Holsters

A1 Journal Article in PLANT PHYSIOLOGY

Developmental stage specificity and the role of mitochondrial metabolism in the response of Arabidopsis leaves to prolonged mild osmotic stress

Aleksandra SkiryczStefanie De BodtToshihiro ObataInge De ClercqHannes ClaeysRiet De RyckeMegan AndriankajaOlivier Van AkenFrank Van BreusegemAlisdair R Fernie et al.

A1 Journal Article in PLANT PHYSIOLOGY

Genome sequencing and analysis of the model grass Brachypodium distachyon

K. BarryS. LucasM. Harmon SmithK. LailH. TiceJ. SchmutzJ. GrimwoodN. HuoG.R. LazoO.D. Anderson et al.

A1 Journal Article in Nature

Increased leaf size: different means to an end

Nathalie Gonzalez SanchezStefanie De BodtRonan SulpiceYusuke JikumaruEunyoung ChaeStijn DhondtTwiggy Van DaeleLiesbeth De MildeDetlef WeigelYuji Kamiya et al.

A1 Journal Article in PLANT PHYSIOLOGY

Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

Jelle Van LeeneJens HollunderDominique EeckhoutGeert PersiauEveline Van De SlijkeHilde StalsGert Van IsterdaelAurine VerkestSandy NeirynckYelle Buffel et al.

A1 Journal Article in MOLECULAR SYSTEMS BIOLOGY

2009

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

Stefanie De BodtSebastian ProostKlaas VandepoelePierre RouzéYves Van de Peer

A1 Journal Article in BMC Genomics

2007

Flowering of strict photoperiodic Nicotiana varieties in non-inductive conditions by transgenic approaches

Petr SmykalJerôme GennenStefanie De BodtVenkatesh RanganathSiegbert Melzer

A1 Journal Article in PLANT MOLECULAR BIOLOGY

2006

Effect of gene and genome duplication on the development and evolution of angiosperms

Stefanie De BodtYves Van de Peer

Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana

Tineke CasneufStefanie De BodtJeroen RaesSteven MaereYves Van de Peer

A1 Journal Article in GENOME BIOLOGY

Promoter analysis of MADS-box genes in eudicots through phylogenetic footprinting

Stefanie De BodtGuenter TheissenYves Van de Peer

A1 Journal Article in MOLECULAR BIOLOGY AND EVOLUTION

The gain and loss of genes during 600 million years of vertebrate evolution

Tine BlommeKlaas VandepoeleStefanie De BodtCedric SimillionSteven MaereYves Van de Peer

A1 Journal Article in GENOME BIOLOGY

2005

Genome duplication and the origin of angiosperms

Stefanie De BodtSteven MaereYves Van de Peer

Editorial material

Modeling gene and genome duplications in eukaryotes

Steven MaereStefanie De BodtJeroen RaesTineke CasneufMarc Van MontaguMartin KuiperYves Van de Peer

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

2004

Belo Horizonte virus: a vaccinia-like virus lacking the A-type inclusion body gene isolated from infected mice

Giliane S TrindadeFlávio G da FonsecaJoão T MarquesSueli DinizJuliana A LeiteStefanie De BodtYves Van de PeerCláudio A BonjardimPaulo CP FerreiraErna G Kroon

A1 Journal Article in JOURNAL OF GENERAL VIROLOGY

2003

And then there were many: MADS goes genomic

Stefanie De BodtJeroen RaesYves Van de PeerGünter Theißen

A1 Journal Article in TRENDS IN PLANT SCIENCE

Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants

Stefanie De BodtJeroen RaesKobe FlorquinStephane RombautsPierre RouzéGünter TheißenYves Van de Peer

A1 Journal Article in JOURNAL OF MOLECULAR EVOLUTION