Research Explorer

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Researcher

Simon Daled

Publications & Research Data

Awards & Distinctions

25 Results

2025

Classification of collagens via peptide ambiguation, in a paleoproteomic LC-MS/MS-based taxonomic pipeline

Ian EngelsAlexandra BurnettPrudence RobertCamille PironneauGrégory AbramsRobbin BouwmeesterPeter Van Der PlaetsenKévin Di ModicaMarcel OtteLawrence Guy Straus et al.

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Multi-omics, multi-tissue analysis reveal role of extracellular matrix remodeling and lipid transport dysfunction in edematous malnutrition (kwashiorkor)

Fabienne NackersKirrily De PolnayRuben AlmeySimon DaledAzahir Dan DjiboSarah DeSaegerDieter DeforceMaarten DhaenensYannick GansemansGriet Glorieux et al.

2023

First insights into human mobility in Neolithic Belgium using strontium isotopic analysis and proteomics : a case study of Grotte de La Faucille (Sclayn, province of Namur)

IJk van HattumMarta Costas RodriguezKasper HobinFrank VanhaeckeHans VandendriesscheHélène ColletPierre CattelainMichel ToussaintQuentin GoffetteMaarten Dhaenens et al.

A1 Journal Article in AMERICAN JOURNAL OF BIOLOGICAL ANTHROPOLOGY

Transferable mass spectrometry methods : forensics in time : palaeoproteomics

Alexandra BurnettRachel Sian DennisSimon DaledDieter DeforceLaura De ClerckMaarten Dhaenens

Bookchapter in Applications of mass spectrometry for the provision of forensic intelligence : state-of-the-art and perspectives

2022

A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics

Bart Van PuyveldeSimon DaledSander WillemsRalf GabrielsAnne Gonzalez de PeredoKarima ChaouiEmmanuelle Mouton-BarbosaDavid BouyssiéKurt BoonenChristopher J. Hughes et al.

A1 Journal Article in SCIENTIFIC DATA

A large scale mass spectrometry-based histone screening for assessing epigenetic developmental toxicity

Sigrid VerhelstBart Van PuyveldeSander WillemsSimon DaledSenne CornelisLaura CorveleynEwoud WillemsDieter DeforceLaura De ClerckMaarten Dhaenens

A1 Journal Article in SCIENTIFIC REPORTS

An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia

Lien ProvezBart Van PuyveldeLaura CorveleynNina DemeulemeesterSigrid VerhelstBeatrice LintermansSimon DaledJuliette RoelsLieven ClementLennart Martens et al.

A1 Journal Article in SCIENTIFIC DATA

Analyzing data independent acquisition mass spectrometry with noiseless ion-networks

Sander WillemsSimon DaledBart Van PuyveldeLaura De ClerckSofie Vande CasteeleFilip Van NieuwerburghDieter DeforceMaarten Dhaenens

Collaborative science : from proteomics method development to core facility

Simon DaledDieter DeforceMaarten Dhaenens

Proteomic comparison of three wild-type pseudorabies virus strains and the attenuated bartha strain reveals reduced incorporation of several tegument proteins in bartha virions

Jonas DelvaSimon DaledCliff Van WaesbergheRuben AlmeyRobert J. J. JansensDieter DeforceMaarten DhaenensHerman Favoreel

A1 Journal Article in JOURNAL OF VIROLOGY

2021

An experimental design to extract more information from MS-based histone studies

Laura De ClerckSander WillemsSimon DaledBart Van PuyveldeSigrid VerhelstLaura CorveleynDieter DeforceMaarten Dhaenens

A1 Journal Article in MOLECULAR OMICS

Cov-MS : a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients

Bart Van PuyveldeKatleen Van UytfangheOlivier TytgatLaurence Van OudenhoveRalf GabrielsRobbin BouwmeesterSimon DaledTim Van Den BosschePathmanaban RamasamySigrid Verhelst et al.

A2 Journal Article in JACS AU

Histone sample preparation for bottom-up mass spectrometry : a roadmap to informed decisions

Simon DaledSander WillemsBart Van PuyveldeLaura CorveleynSigrid VerhelstLaura De ClerckDieter DeforceMaarten Dhaenens

A2 Journal Article in PROTEOMES

Large scale toxicoepigenetics on histones : a mass spectrometry-based screening assay applied to developmental toxicity

Sigrid VerhelstBart Van PuyveldeSander WillemsSimon DaledSenne CornelisLaura CorveleynEwoud WillemsDieter DeforceLaura De ClerckMaarten Dhaenens

The CD147 protein complex is involved in entry of Chikungunya virus and related alphaviruses in human cells

Lien De CaluweSandra CoppensKatleen VereeckenSimon DaledMaarten DhaenensXaveer Van OstadeDieter DeforceKevin K. ArienKoen Bartholomeeusen

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

2020

An alphaherpesvirus exploits antimicrobial beta-defensins to initiate respiratory tract infection

Jolien Van CleemputKatrien PoelaertKathlyn LavalNathalie VanderheijdenMaarten DhaenensSimon DaledFilip BoyenFrank PasmansHans Nauwynck

A1 Journal Article in JOURNAL OF VIROLOGY

Comprehensive histone epigenetics : a mass spectrometry based screening assay to measure epigenetic toxicity

Sigrid VerhelstLaura De ClerckSander WillemsBart Van PuyveldeSimon DaledDieter DeforceMaarten Dhaenens

A2 Journal Article in METHODSX

Removing the hidden data dependency of DIA with predicted spectral libraries

Bart Van PuyveldeSander WillemsRalf GabrielsSimon DaledLaura De ClerckSofie Vande CasteeleAn StaesFrancis ImpensDieter DeforceLennart Martens et al.

A1 Journal Article in PROTEOMICS

2019

Host intestinal biomarker identification in a gut leakage model in broilers

Fien De MeyerVenessa EeckhautRichard DucatelleMaarten DhaenensSimon DaledAnnelike DedeurwaerderMaarten De GussemFreddy HaesebrouckDieter DeforceFilip Van Immerseel

A1 Journal Article in VETERINARY RESEARCH

Host metabolites stimulate the bacterial proton motive force to enhance the activity of aminoglycoside antibiotics

Aurélie CrabbéLisa OstynSorien StaelensCharlotte RigautsMartijn RisseeuwMaarten DhaenensSimon DaledHeleen Van AckerDieter DeforceSerge Van Calenbergh et al.

A1 Journal Article in PLOS PATHOGENS

hSWATH : unlocking SWATH’s full potential for an untargeted histone perspective

Laura De ClerckSander WillemsRoberta NoberiniCamilla RestelliniBart Van PuyveldeSimon DaledTiziana BonaldiDieter DeforceMaarten Dhaenens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Small RNA NcS27 co-regulates utilization of carbon sources in Burkholderia cenocepacia J2315

Andrea SassStijn De WaeleSimon DaledBart DevreeseDieter DeforceFilip Van NieuwerburghTom Coenye

A1 Journal Article in MICROBIOLOGY-SGM

The role of small proteins in Burkholderia cenocepacia J2315 biofilm formation, persistence and intracellular growth

Heleen Van AckerAurélie CrabbéDukas JurėnasLisa OstynAndrea SassSimon DaledMaarten DhaenensDieter DeforceEline TeirlinckHerlinde De Keersmaecker et al.

A2 Journal Article in BIOFILM

2018

Microfluidics-based liquid chromatography/mass spectrometry multiple reaction monitoring approach for the relative quantification of Burkholderia cenocepacia secreted virulence factors

Sofie DepluverezSimon DaledStijn De WaeleSören PlanckaertJolien SchoovaertsDieter DeforceBart Devreese

A1 Journal Article in RAPID COMMUNICATIONS IN MASS SPECTROMETRY

2016

Assessing the impact of minimizing arginine conversion in fully defined SILAC culture medium in human embryonic stem cells

Ellen ScheerlinckKatleen Van SteendamSimon DaledElisabeth GovaertLiesbeth VossaertPaulien MeertFilip Van NieuwerburghAnn Van SoomLuc PeelmanPetra De Sutter et al.

A1 Journal Article in PROTEOMICS