Research Explorer

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Researcher

Ruth Seurinck

Publications & Research Data

Awards & Distinctions

80 Results

2025

A single-cell and spatial wheat root atlas with cross-species annotations delineates conserved tissue-specific marker genes and regulators

Yuji KeVincent PujolJasper StautLotte PollarisRuth SeurinckThomas EekhoutCarolin SeyfferthMaite Saura SanchezMichiel Van BelMarnik Vuylsteke et al.

A1 Journal Article in CELL REPORTS

Expert-guided analysis of spatial omics data

Benjamin RombautYvan SaeysRuth Seurinck

On interoperability and trajectory analysis of single-cell transcriptomics data

Louise DeconinckYvan SaeysRuth Seurinck

Potential of biomarker-based enrichment strategies to identify critically ill patients for emerging cell death interventions

Cyril WillemartRuth SeurinckTom StroobantsSamya Van CoillieJorien De LoorSze Men ChoiRia RoelandtMohan RajapurkarSymen LigthartPhilippe G. Jorens et al.

A1 Journal Article in CELL DEATH AND DIFFERENTIATION

Unraveling cell-cell communication with NicheNet by inferring active ligands from transcriptomics data

Chananchida Sang-aramRobin BROWAEYSRuth SeurinckYvan Saeys

A1 Journal Article in NATURE PROTOCOLS

2024

A TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma

Joanna PozniakDennis PedriEwout LandeloosYannick Van HerckAsier AntoranzLukas VanwynsbergheAda NowosadNiccolo RodaSamira MakhzamiGreet Bervoets et al.

A1 Journal Article in CELL

From peak to meta-analysis map : cumulating knowledge across neuroimaging studies

Freya AcarBeatrijs MoerkerkeRuth Seurinck

Improving the eligibility of task-based fMRI studies for meta-analysis : a review and reporting recommendations

Freya AcarCamille MaumetTalia HeutenMaya VervoortHan BossierRuth SeurinckBeatrijs Moerkerke

A1 Journal Article in NEUROINFORMATICS

Pattern or artifact? Interactively exploring embedding quality with TRACE

Edith HeiterLiesbet MartensRuth SeurinckMartin GuilliamsTijl De BieYvan SaeysJefrey Lijffijt

SPArrOW : a flexible, interactive and scalable pipeline for spatial transcriptomics analysis

Lotte PollarisBavo VannesteBenjamin RombautArne DefauwFrank VernaillenJulien MortierWout VanhendenLiesbet MartensTinne ThonéJean-François Hastir et al.

Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics

Chananchida Sang-aramRobin BrowaeysRuth SeurinckYvan Saeys

A1 Journal Article in ELIFE

VIB Hackathon on spatial omics tools and methods

Benjamin RombautLotte PollarisChananchida Sang-aramMichiel Ver CruysseRobrecht CannoodtFrank VernaillenArne DefauwJulien MortierMayar AliKresimir Bestak et al.

2023

A plasma miR-193b-365 signature combined with age and glycemic status predicts response to Lactococcus lactis-based antigen-specific immunotherapy in new-onset type 1 diabetes

Gabriele SassiGiada LicataGiuliana VentrigliaAmber WoutersPierre LemaitreRuth SeurinckAlessia MoriGiuseppina Emanuela GriecoSamal BissenovaDarcy Ellis et al.

A1 Journal Article in DIABETES

Ferroptosis and pyroptosis signatures in critical COVID-19 patients

Cédric PelemanSamya Van CoillieSymen LigthartSze Men ChoiJan De WaelePieter DepuydtDominique BenoitHANNAH SCHAUBROECKSven M. FrancqueKarolien Dams et al.

A1 Journal Article in CELL DEATH AND DIFFERENTIATION

Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

Anthony SonrelAlmut LuetgeCharlotte SonesonIzaskun MallonaPierre-Luc GermainSergey KnyazevJeroen GilisReto GerberRuth SeurinckDominique Paul et al.

A1 Journal Article in GENOME BIOLOGY

MultiNicheNet : a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

Robin BrowaeysJeroen GilisChananchida Sang-aramPieter De BleserLevi HosteSimon TavernierDiether LambrechtsRuth SeurinckYvan Saeys

Review paper: Reporting practices for task fMRI studies

Freya AcarCamille MaumetTalia HeutenMaya VervoortHan BossierRuth SeurinckBeatrijs Moerkerke

A1 Journal Article in NEUROINFORMATICS

Revised conditional t-SNE : looking beyond the nearest neighbors

Edith HeiterBo KangRuth SeurinckJefrey Lijffijt

Single-cell profiling identifies a novel human polyclonal unconventional T cell lineage

Lore BillietLaurenz De CockGuillem Sanchez SanchezRupert MayerGlenn GoetgelukStijn De MunterMelissa PilleJoline IngelsHanne JansenKarin Weening et al.

A1 Journal Article in JOURNAL OF EXPERIMENTAL MEDICINE

2022

Challenges in translational machine learning

Artuur CouckuytRuth SeurinckAnnelies EmmaneelKatrien QuintelierDavid NovákSofie Van GassenYvan Saeys

A1 Journal Article in HUMAN GENETICS

Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq

Viacheslav MylkaIrina MatetoviciSuresh PoovathingalJeroen AertsNiels VandammeRuth SeurinckKevin VerstaenGert HulselmansSilvie van den HoeckeIsabelle Scheyltjens et al.

A1 Journal Article in GENOME BIOLOGY

Discussion on 'distributional independent component analysis for diverse neuroimaging modalities' by Ben Wu, Subhadip Pal, Jian Kang, and Ying Guo

Beatrijs MoerkerkeRuth Seurinck

Editorial material

Distinct transcriptional programs in ascitic and solid cancer cells induce different responses to chemotherapy in high-grade serous ovarian cancer

Nele LoretNiels VandammeJordy De ConinckJoachim TaminauKato De ClercqGillian BlanckeSven JonckheereSteven GoossensKelly LemeireSofie De Prijck et al.

A1 Journal Article in MOLECULAR CANCER RESEARCH

Loss of GM-CSF-dependent instruction of alveolar macrophages in COVID-19 provides a rationale for inhaled GM-CSF treatment

Cedric BosteelsKarel Van DammeElisabeth De LeeuwJozefien DeclercqBastiaan MaesVictor BosteelsLevi HosteLeslie NaesensNincy DebeufJulie Deckers et al.

A1 Journal Article in CELL REPORTS MEDICINE

Operational tolerance after hematopoietic stem cell transplantation is characterized by distinct transcriptional, phenotypic, and metabolic signatures

Laetitia DubouchetHelena TodorovRuth SeurinckNicolas ValletSofie Van GassenAurelien CorneauCatherine BlancHabib ZoualiAnne BolandJean-Francois Deleuze et al.

A1 Journal Article in SCIENCE TRANSLATIONAL MEDICINE

Targeting ferroptosis protects against experimental (multi)organ dysfunction and death

Samya Van CoillieEmily Van SanInes GoetschalckxBartosz WiernickiBanibrata MukhopadhyayWulf TonnusSze Men ChoiRia RoelandtCatalina DumitrascuLudwig Lamberts et al.

A1 Journal Article in NATURE COMMUNICATIONS

2021

Advances and opportunities in single-cell transcriptomics for plant research

Carolin SeyfferthJim RenemaJos WendrichThomas EekhoutRuth SeurinckNiels VandammeBernhard BlobYvan SaeysYrjo HelariuttaKenneth D. Birnbaum et al.

A1 Journal Article in ANNUAL REVIEW OF PLANT BIOLOGY

Targeting ferroptosis protects against multiorgan dysfunction and death

Tom Vanden BergheSamya Van CoillieInes GoetschalckxBartosz WiernickiBanibrata MukhopadhyayWulf TonnusEmily Van SanSze Men ChoiRia RoelandtCatalina Dumitrascu et al.

2020

A scalable SCENIC workflow for single-cell gene regulatory network analysis

Bram van de SandeChristopher FlerinKristofer DavieMaxime De WaegeneerGert HulselmansSara AibarRuth SeurinckWouter SaelensRobrecht CannoodtQuentin Rouchon et al.

A1 Journal Article in NATURE PROTOCOLS

Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver

Anneleen RemmerieLiesbet MartensTinne ThonéAngela CastoldiRuth SeurinckBenjamin PavieJoris RoelsBavo VannesteSofie De PrijckMathias Vanhockerhout et al.

A1 Journal Article in IMMUNITY

The empirical replicability of task-based fMRI as a function of sample size

Han BossierSanne RoelsRuth SeurinckTobias BanaschewskiGareth J. BarkerArun L. W. BokdeErin Burke QuinlanSylvane DesrivièresHerta FlorAntoine Grigis et al.

A1 Journal Article in NEUROIMAGE

2018

Assessing robustness against potential publication bias in Activation Likelihood Estimation (ALE) meta-analyses for fMRI

Freya AcarRuth SeurinckSimon B. EickhoffBeatrijs Moerkerke

A1 Journal Article in PLOS ONE

The influence of study-level inference models and study set size on coordinate-based fMRI meta-analyses

Han BossierRuth SeurinckSimone KuehnTobias BanaschewskiGareth J BarkerArun LW BokdeJean-Luc MartinotHerve LemaitreTomáš PausSabina Millenet et al.

A1 Journal Article in FRONTIERS IN NEUROSCIENCE

The interplay between sample size and replicability of results in fMRI studies

Han BossierRuth SeurinckSanne RoelsSimone KühnBeatrijs Moerkerke

2017

Assessing cluster validity in coordinate-based meta-analysis for fMRI

Freya AcarRuth SeurinckSimon B. EickhoffBeatrijs Moerkerke

Introducing alternative-based thresholding for defining functional regions of interest in fMRI

Jasper DegryseRuth SeurinckJoke DurnezJavier Gonzalez-CastilloPeter A BandettiniBeatrijs Moerkerke

A1 Journal Article in FRONTIERS IN NEUROSCIENCE

Maximized likelihood ratio tests for functional localization in fMRI

Jasper DegryseRuth SeurinckBeatrijs Moerkerke

2016

A note on likelihood ratio testing for average error control

Jasper DegryseRuth SeurinckBeatrijs Moerkerke

Assessing publication bias in coordinate-based meta-analysis techniques?

Freya AcarRuth SeurinckSimone KühnBeatrijs Moerkerke

Assessing publication bias in coordinate-based meta-analysis techniques?

Freya AcarRuth SeurinckSimone KühnBeatrijs Moerkerke

Assessing publication bias in coordinate-based meta-analysis techniques?

Freya AcarRuth SeurinckSimone KühnBeatrijs Moerkerke

Assessing small sample bias in coordinate based meta-analyses for fMRI

Freya AcarRuth SeurinckBeatrijs Moerkerke

fMRI data analysis: Statistical challenges and solutions.

Freya AcarHan BossierJasper DegryseRuth SeurinckBeatrijs Moerkerke

Improving the balance between sensitivity and specificity for functional localization in fMRI data

Jasper DegryseRuth SeurinckBeatrijs Moerkerke

2015

Assessing publication bias in coordinate-based meta-analysis techniques?

Freya AcarRuth SeurinckBeatrijs Moerkerke

Introducing alternative-based hypothesis testing for defining functional regions of interest in fMRI

Jasper DegryseRuth SeurinckJoke DurnezBeatrijs Moerkerke

Prospective power estimation for peak inference with the toolbox neuropower

Joke DurnezJasper DegryseRuth SeurinckBeatrijs MoerkerkeThomas Nichols

2014

Alternative-based thresholding: a simulation study

Jasper DegryseRuth SeurinckJoke DurnezBeatrijs Moerkerke

Alternative-based thresholding: a simulation study

Jasper DegryseRuth SeurinckJoke DurnezBeatrijs Moerkerke

Establishing cooperation in a mixed-motive social dilemma: an fMRI study investigating the role of social value orientation and dispositional trust

Griet EmondsCarolyn H DeclerckChristophe BooneRuth SeurinckRik Achten

A1 Journal Article in SOCIAL NEUROSCIENCE

Fixed versus random effects models for fMRI meta-analysis

Han BossierRuth SeurinckBeatrijs Moerkerke

Individual differences in behavioral flexibility in a probabilistic reversal learning task: an fMRI study

Anja WaegemanCarolyn DeclerckChristophe BooneRuth SeurinckPaul Parizel

A1 Journal Article in JOURNAL OF NEUROSCIENCE PSYCHOLOGY AND ECONOMICS

Inside the syntactic box: the neural correlates of the functional and positional level in covert sentence production

Simona CollinaRuth SeurinckRobert Hartsuiker

A1 Journal Article in PLOS ONE

2013

Adaptive smoothing as inference strategy

Marijke WelvaertKarsten TabelowRuth SeurinckYves Rosseel

A1 Journal Article in NEUROINFORMATICS

The influence of the noradrenergic system on optimal control of neural plasticity

Massimo SilvettiRuth SeurinckMarlies van BochoveTom Verguts

A1 Journal Article in FRONTIERS IN BEHAVIORAL NEUROSCIENCE

Value and prediction error estimation account for volatility effects in ACC: a model-based fMRI study

Massimo SilvettiRuth SeurinckTom Verguts

A1 Journal Article in CORTEX

2012

Inconsistencies in spontaneous and intentional trait inferences

Ning MaMarie VandekerckhoveKris BaetensFrank Van OverwalleRuth SeurinckWim Fias

A1 Journal Article in SOCIAL COGNITIVE AND AFFECTIVE NEUROSCIENCE

2011

Further fMRI validation of the visual half field technique as an indicator of language laterality: a large-group analysis

Lise Van der HaegenQing CaiRuth SeurinckMarc Brysbaert

A1 Journal Article in NEUROPSYCHOLOGIA

Mental rotation meets the motion aftereffect: the role of hV5/MT+ in visual mental imagery

Ruth SeurinckFloris P de LangeEric AchtenGuy Vingerhoets

A1 Journal Article in JOURNAL OF COGNITIVE NEUROSCIENCE

Spontaneous and intentional trait inferences recruit a common mentalizing network to a different degree : spontaneous inferences activate only its core areas

Ning MaMarie VandekerckhoveFrank Van OverwalleRuth SeurinckWim Fias

A1 Journal Article in SOCIAL NEUROSCIENCE

Value and prediction error in medial frontal cortex: integrating the single-unit and systems levels of analysis

Massimo SilvettiRuth SeurinckTom Verguts

A1 Journal Article in FRONTIERS IN HUMAN NEUROSCIENCE

2010

The commonality of the neural networks for verbal and visual short-term memory

Steve MajerusArnaud D'ArgembeauTrecy Martinez PeretzSanaa BelayachiMartial Van der LindenEric SalmonRuth SeurinckWim FiasPierre Maquet

A1 Journal Article in JOURNAL OF COGNITIVE NEUROSCIENCE

The internal anticipation of sensory action effects: when action induces FFA and PPA activity

Simone KühnRuth SeurinckWim FiasFlorian Waszak

A1 Journal Article in FRONTIERS IN HUMAN NEUROSCIENCE

2009

Mirror-Induced Visual Illusion of Hand Movements: A Functional Magnetic Resonance Imaging Study

K MatthysM SmitsJN Van der GeestA Van der LugtRuth SeurinckHJ StamRW Selles

A1 Journal Article in ARCHIVES OF PHYSICAL MEDICINE AND REHABILITATION

2008

Prism adaptation moves neglect-related perseveration to contralesional space

Gudrun NysRuth SeurinckChris Dijkerman

A1 Journal Article in COGNITIVE AND BEHAVIORAL NEUROLOGY

2007

Comparison between functional magnetic resonance imaging at 1.5 and 3 tesla - Effect of increased field strength on 4 paradigms used during presurgical work-up

Ann TielemanPieter VandemaeleRuth SeurinckKarel DeblaereEric Achten

A1 Journal Article in INVESTIGATIVE RADIOLOGY

Differential activation of the human brain during mental rotation paradigms, an fMRI study

Ruth SeurinckG Vingerhoets

Mirror therapy: fMRI pilot study on mirror-induced visual illusions

KOEN MATTHYSM SMITSJ VAN DER GEESTA VAN DER LUGTRuth SeurinckH STAMR SELLES

Where mental rotation meets the motion after effect: the role of hMT+/V5 in imagined transformations

Ruth SeurinckF DE LANGEEric AchtenGuy Vingerhoets

2006

Clinical relevance of memory performance during Wada is stimulus type dependent

Guy VingerhoetsMarijke MiattonKristl VonckRuth SeurinckPaul Boon

A1 Journal Article in JOURNAL OF NEUROLOGY NEUROSURGERY AND PSYCHIATRY

Memory performance during the intracarotid amobarbital procedure and neuropsychological assessment in medial temporal lobe epilepsy: The limits of material specificity

Guy VingerhoetsMarijke MiattonKristl VonckRuth SeurinckPaul Boon

A1 Journal Article in EPILEPSY & BEHAVIOR

2005

Stimulus pacing affects the activation of the medial temporal lobe during a semantic classification task: An fMRI study

Ann TielemanRuth SeurinckKarel DeblaerePieter VandemaeleGuy VingerhoetsEric Achten

A1 Journal Article in NEUROIMAGE

Trial pacing in mental rotation tasks

Ruth SeurinckGuy VingerhoetsPieter VandemaeleKarel DeblaereEric Achten

A1 Journal Article in NEUROIMAGE

2004

Does egocentric mental rotation elicit sex differences?

Ruth SeurinckGuy VingerhoetsFP DE LANGEEric Achten

A1 Journal Article in NEUROIMAGE

2003

Does handedness influence motor imagery in mental rotation? An fMRI study

Ruth SeurinckGuy VingerhoetsKarel DeblaerePieter VandemaeleAnn TielemanEric Achten

Multilingualism: an fMRI study

Guy VingerhoetsJohn Van BorselC TESINKM VAN DEN NOORTKarel DeblaereRuth SeurinckPieter VandemaeleEric Achten

A1 Journal Article in NEUROIMAGE

Object naming in mother tongue versus non-native languages in multilinguals reveals different patterns of lateralizaton: an fMRI study

Guy VingerhoetsJohn Van BorselC TESINKM VAN DEN NOORTRuth SeurinckKarel DeblaerePieter VandemaeleEric Achten

Self pacing of a semantic decision task produces better lateralization indexes and induces novelty encoding by the left mesial temporal structures: an fMRI study

Ann TielemanEric AchtenKarel DeblaerePieter VandemaeleRuth SeurinckGuy Vingerhoets

Sex differences in mental rotation of graspable stimuli: an fMRI study

Ruth SeurinckGuy VingerhoetsKarel DeblaerePieter VandemaeleAnn TielemanEric Achten

The effect of stimulus pacing on cortical activation patterns during a mental rotation paradigm: an fMRI study

Ruth SeurinckGuy VingerhoetsPieter VandemaeleKarel DeblaereAnn TielemanEric Achten