Research Explorer

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Researcher

Ralf Gabriels

14 Results

2021

Cov-MS : a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients

Bart Van PuyveldeKatleen Van UytfangheOlivier TytgatLaurence Van OudenhoveRalf GabrielsRobbin BouwmeesterSimon DaledTim Van Den BosschePathmanaban RamasamySigrid VerhelstLaura De ClerckLaura CorveleynSander WillemsNathan DebunneEvelien WynendaeleBart De SpiegeleerPéter JudákKris RoelsLaurie De WildePeter Van EenooTim ReynsMarc CherletEmmie DumontGriet DebyserRuben t’KindtKoen SandraSurya GuptaNicolas DrouinAmy HarmsThomas HankemeierDonald J. L. JonesPankaj GuptaDan LaneCatherine S. LaneSaid El OuadiJean-Baptiste VincendetNick MorriceStuart OehrleNikunj TannaSteve SilvesterSally HannamFlorian C. SiglochAndrea Bhangu-UhlmannJan ClaereboudtN. Leigh AndersonMorteza RazaviSven DegroeveLize CuypersChristophe StoveKatrien LagrouGeert A. MartensDieter DeforceLennart MartensJohannes P. C. VissersMaarten Dhaenens

A2 Journal Article in JACS AU

Personalized proteome : comparing proteogenomics and open variant search approaches for single amino acid variant detection

Renee SalzRobbin BouwmeesterRalf GabrielsSven DegroeveLennart MartensPieter-Jan VoldersPeter A.C. ’t Hoen

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Spectral prediction features as a solution for the search space size problem in proteogenomics

Steven VerbruggenSiegfried GessulatRalf GabrielsAnna MatsarokiHendrik Van de VoordeBernhard KusterSven DegroeveLennart MartensWim Van CriekingeMathias WilhelmGerben Menschaert

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Universal Spectrum Identifier for mass spectra

Eric W. DeutschYasset Perez-RiverolJeremy CarverShin KawanoLuis MendozaTim Van Den BosscheRalf GabrielsPierre-Alain BinzBenjamin PullmanZhi SunJim ShofstahlWout BittremieuxTytus D. MakJoshua KleinYunping ZhuHenry LamJuan Antonio VizcaínoNuno Bandeira

A1 Journal Article in NATURE METHODS

2020

COSS : a fast and user-friendly tool for spectral library searching

Genet Abay ShiferawElien VandermarliereNiels HulstaertRalf GabrielsLennart MartensPieter-Jan Volders

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Cov-MS : a community-based template assay for clinical MS-based protein detection in SARS-CoV-2 patients

Bart Van PuyveldeKatleen Van UytfangheOlivier TytgatL. Van OudenhoveRalf GabrielsRobbin BouwmeesterSimon DaledTim Van Den BosschePathmanaban RamasamySigrid VerhelstLaura De ClerckLaura CorveleynNathan DebunneEvelien WynendaeleBart De SpiegeleerPéter JudákKris RoelsLaurie De WildePeter Van EenooTim ReynsMarc CherletE. DumontG. DebyserR. t’KindtK. SandraSurya GuptaNicolas DrouinAmy HarmsThomas HankemeierDJL JonesP. GuptaD. LaneC.S. LaneS. El OuadiJB. VincendetN. MorriceS. OehrleN. TannaS. SilvesterS. HannamF. SiglochA. Bhangu-UhlmannJ. ClaereboudtL. AndersonM. RazaviSven DegroeveL. CuypersChristophe StoveK. LagrouG. MartensDieter DeforceLennart MartensJ.P.C. VissersMaarten Dhaenens

DeepLC can predict retention times for peptides that carry as-yet unseen modifications

Robbin BouwmeesterRalf GabrielsNiels HulstaertLennart MartensSven Degroeve

Proceedings of the EuBIC-MS 2020 Developers’ Meeting

Christopher AshwoodWout BittremieuxEric W. DeutschNadezhda T. DonchevaViktoria DorferRalf GabrielsVladimir GorshkovSurya GuptaAndrew R. JonesLukas KällDominik KopczynskiLydie LaneLudwig LautenbacherMarc LegeayMarie Locard-PauletBart MesuereYasset Perez-RiverolEugen NetzJulianus PfeufferTimo SachsenbergRenee SalzPatroklos SamarasHenning SchiebenhoeferTobias SchmidtVeit SchwämmleAlessio SoggiuJulian UszkoreitTim Van Den BosscheBart Van PuyveldeJoeri Van StrienPieter VerschaffeltHenry WebelSander Willems

A2 Journal Article in EUPA OPEN PROTEOMICS

Removing the hidden data dependency of DIA with predicted spectral libraries

Bart Van PuyveldeSander WillemsRalf GabrielsSimon DaledLaura De ClerckSofie Vande CasteeleAn StaesFrancis ImpensDieter DeforceLennart MartensSven DegroeveMaarten Dhaenens

A1 Journal Article in PROTEOMICS

The HUPO-PSI standardized spectral library format

Ralf GabrielsNuno BandeiraWout BittremieuxJeremy J CarverMatthew ChambersShin KawanoHenry LamTytus MakYasset Perez-RiverolBenjamin J PullmanVagisha SharmaJim ShofstahlTim Van Den BosscheJuan Antonio VizcainoYunping ZhuEric W Deutsch

The age of data-driven proteomics : how machine learning enables novel workflows

Robbin BouwmeesterRalf GabrielsTim Van Den BosscheLennart MartensSven Degroeve

A1 Journal Article in PROTEOMICS

2019

Fast and accurate MS² peak intensity predictions for multiple fragmentation methods, instruments and labeling techniques

Ralf GabrielsLennart MartensSven Degroeve

MS²PIP : fast and accurate MS² peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques

Ralf GabrielsLennart MartensSven Degroeve

Updated MS²PIP web server delivers fast and accurate MS² peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques

Ralf GabrielsLennart MartensSven Degroeve

A1 Journal Article in NUCLEIC ACIDS RESEARCH