Research Explorer

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Researcher

Martin Kuiper

Awards & Distinctions

21 Results

2010

DASS-GUI : a user interface for identification and analysis of significant patterns in non-sequential data

Jens HollunderMaik FriedelMartin KuiperThomas Wilhelm

A1 Journal Article in BIOINFORMATICS

2008

Biological knowledge management and gene network analysis: a heuristic road to System Biology

Steven VercruysseYves Van de PeerMartin Kuiper

Extracting expression modules from perturbational gene expression compendia

Steven MaerePatrick Van DijckMartin Kuiper

A1 Journal Article in BMC SYSTEMS BIOLOGY

ONTO-PERL: an API for supporting the development and analysis of bio-ontologies

Erick Antezana San RomanMikel EgañaBernard De BaetsMartin KuiperVladimir Mironov

A1 Journal Article in BIOINFORMATICS

Ontology design patterns for bio-ontologies: a case study on the cell cycle ontology

Mikel Egaña ArangurenErick Antezana San RomanMartin KuiperRobert Stevens

A1 Journal Article in BMC BIOINFORMATICS

2007

CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes

Gert SclepJoke AllemeerschRobin LiechtiBjörn De MeyerJim BeynonRishikesh BhaleraoYves MoreauWilfried NietfeldJean-Pierre RenouPhilippe Reymond et al.

A1 Journal Article in BMC BIOINFORMATICS

Integration of biological networks and gene expression data using Cytoscape

Melissa S ClineMichael SmootEthan CeramiAllan KuchinskyNerius LandysChris WorkmanRowan ChristmasIliana Avila-CampiloMichael CreechBenjamin Gross et al.

A1 Journal Article in NATURE PROTOCOLS

Validating module network learning algorithms using simulated data

Tom MichoelSteven MaereEric BonnetAnagha JoshiYvan SaeysTim Van den BulckeKoenraad Van LeemputPiet Van RemortelMartin KuiperKathleen Marchal et al.

A1 Journal Article in BMC BIOINFORMATICS

2006

A cell-cycle knowledge integration framework

Erick Antezana San RomanElena TsiporkovaVladimir MironovMartin Kuiper

A1 Journal Article in Lecture Notes in Computer Science

Genetic dissection of transcriptional regulation by cDNA-AFLP

Marnik VuylstekeHilde Van Den DaeleAnnelies VercauterenMarc ZabeauMartin Kuiper

A1 Journal Article in PLANT JOURNAL

Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme

Raphaël KiekensAnnelies VercauterenBeatrijs MoerkerkeEls GoetghebeurHilde Van Den DaeleRoel SterkenMartin KuiperFred van EeuwijkMarnik Vuylsteke

A1 Journal Article in NUCLEIC ACIDS RESEARCH

The Arabidopsis leaf as a model system for investigating the role of cell cycle regulation in organ growth

Gerrit BeemsterSteven VercruysseLieven De VeylderMartin KuiperDirk Inzé

A1 Journal Article in JOURNAL OF PLANT RESEARCH

2005

Benchmarking the CATMA microarray : a novel tool for Arabidopsis transcriptome analysis

Joke AllemeerschSteffen DurinckRudy VanderhaeghenPhilippe AlardRuth MaesKurt SeeuwsTom BogaertKathleen CoddensKirsten DeschouwerPaul Van Hummelen et al.

A1 Journal Article in PLANT PHYSIOLOGY

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

Steven MaereKarel HeymansMartin Kuiper

A1 Journal Article in BIOINFORMATICS

Genetic analysis of variation in gene expression in Arabidopsis thaliana

Marnik VuylstekeFred van EeuwijkPaul Van HummelenMartin KuiperMarc Zabeau

A1 Journal Article in GENETICS

Modeling gene and genome duplications in eukaryotes

Steven MaereStefanie De BodtJeroen RaesTineke CasneufMarc Van MontaguMartin KuiperYves Van de Peer

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simulating genetic networks made easy: network construction with simple building blocks

Steven VercruysseMartin Kuiper

A1 Journal Article in BIOINFORMATICS

The cyclin-dependent kinase inhibitor KRP2 controls the onset of the endoreduplication cycle during Arabidopsis leaf development through inhibition of mitotic CDKA;1 kinase complexes

Aurine VerkestCarmen De Oliveira ManesSteven VercruysseSara MaesEls Van Der SchuerenTom BeeckmanPascal GenschikMartin KuiperDirk InzéLieven De Veylder

A1 Journal Article in PLANT CELL

2004

Versatile gene-specific sequence tags for Arabidopsis functional genomics : trancript profiling and reverse genetics applications

Pierre HilsonJoke AllemeerschThomas AltmannSebastien AubourgAlexandra AvonJim BeynonRishikesh P BhaleraoFrédérique BittonMichel CabocheBernard Cannoot et al.

A1 Journal Article in GENOME RESEARCH

2003

European consortia building integrated resources for Arabidopsis functional genomics

Pierre HilsonIan SmallMartin Kuiper

A1 Journal Article in CURRENT OPINION IN PLANT BIOLOGY

1999

Two high-density AFLP® linkage maps of Zea mays L.: analysis of distribution of AFLP markers

Marnik VuylstekeR MankR AntoniseE BastiaansML SeniorCW StuberAE MelchingerT LübberstedtXC XiaP Stam et al.

A1 Journal Article in THEORETICAL AND APPLIED GENETICS