Research Explorer

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Researcher

Marieke Vromman

Awards & Distinctions

12 Results

2024

FUSIONprimerXL: scalable PCR primer design for fusion transcript quantification.

Annelien MorlionMarieke VrommanEveline Vanden EyndeKimberly VerniersJo VandesompeleAnneleen Decock

2023

Chasing circles : developing a toolbox for circRNA detection and validation

Marieke VrommanJo VandesompelePieter-Jan Volders

Circular RNA detection pipelines yield divergent sets of circular RNAs

Marieke VrommanJo Vandesompele

Editorial material

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

Marieke VrommanJasper AnckaertStefania BortoluzziAlessia BuratinChia-Ying ChenQinjie ChuTrees-Juen ChuangRoozbeh DehghannasiriChristoph DieterichXin Dong et al.

A1 Journal Article in NATURE METHODS

2022

CIRCprimerXL : convenient and high-throughput PCR primer design for circular RNA quantification

Marieke VrommanJasper AnckaertJo VandesompelePieter-Jan Volders

A2 Journal Article in FRONTIERS IN BIOINFORMATICS

CiLiQuant : quantification of RNA junction reads based on their circular or linear transcript origin

Annelien MorlionEva HulstaertMarieke VrommanJasper AnckaertCeline EveraertJo VandesompelePieter Mestdagh

A2 Journal Article in FRONTIERS IN BIOINFORMATICS

Large-scale benchmarking of circular RNA detection tools

Marieke VrommanJo VandesompelePieter-Jan Volders

2021

Closing the circle : current state and perspectives of circular RNA databases

Marieke VrommanJo VandesompelePieter-Jan Volders

A1 Journal Article in BRIEFINGS IN BIOINFORMATICS

Large-scale benchmarking of circular RNA detection tools

Marieke VrommanJo VandesompelePieter-Jan Volders

The RNA Atlas expands the catalog of human non-coding RNAs

Lucia LorenziHua-Sheng ChiuFrancisco Avila CobosStephen GrossPieter-Jan VoldersRobrecht CannoodtJustine NuytensKatrien VanderheydenJasper AnckaertSteve Lefever et al.

A1 Journal Article in NATURE BIOTECHNOLOGY

The RNA Atlas expands the catalog of human non-coding RNAs (June, 10.1038/s41587-021-00936-1, 2021)

Lucia LorenziHua-Sheng ChiuFrancisco Avila CobosStephen GrossPieter-Jan VoldersRobrecht CannoodtJustine NuytensKatrien VanderheydenJasper AnckaertSteve Lefever et al.

Validation of circular RNAs using RT‐qPCR after effective removal of linear RNAs by ribonuclease R

Marieke VrommanNurten YigitKimberly VerniersSteve LefeverJo VandesompelePieter-Jan Volders

A2 Journal Article in CURRENT PROTOCOLS