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Researcher
Karen Verboom
Profile
Projects
Publications
Activities
Awards & Distinctions
22
Results
2021
SOX11 as guardian of epigenetic plasticity in neuroblastoma
Bieke Decaesteker
Amber Louwagie
Siebe Loontiens
Sara De Brouwer
Carolina de Carvalho Nunes
Geertrui Denecker
Fanny De Vloed
Lisa Depestel
Juliette Roels
Karen Verboom
et al.
C3
Conference
2021
2020
SOX11 as guardian of epigenetic plasticity in neuroblastoma
Bieke Decaesteker
Amber Louwagie
Siebe Loontiens
Carolina de Carvalho Nunes
Karen Verboom
Juliette Roels
Eva D'haene
Rogier Versteeg
Kaat Durinck
Anton Henssen
et al.
C3
Conference
2020
2019
A neuronal enhancer network upstream of MEF2C is compromised in patients with Rett-like characteristics
Eva D'haene
Reut Bar-Yaacov
Inbar Bariah
Lies Vantomme
Sien Van Loo
Francisco Avila Cobos
Karen Verboom
Reut Eshel
Rawan Alatawna
Björn Menten
et al.
A1
Journal Article
in
HUMAN MOLECULAR GENETICS
2019
Deciphering complete cancer transcriptomes from bulk to single cell level
Karen Verboom
Franki Speleman
Jo Vandesompele
Kaat Durinck
Dissertation
2019
Long noncoding RNA expression profiling in cancer : challenges and opportunities
Lucia Lorenzi
Francisco Avila Cobos
Anneleen Decock
Celine Everaert
Hetty Helsmoortel
Steve Lefever
Karen Verboom
Pieter-Jan Volders
Franki Speleman
Jo Vandesompele
et al.
A1
Journal Article
in
GENES CHROMOSOMES & CANCER
2019
Noncoding structural variants disrupt the regulatory architecture of Rett genes
Eva D'haene
Reut Bar-Yaacov
Inbar Bariah
Lies Vantomme
Sien Van Loo
Francisco Avila Cobos
Karen Verboom
Reut Eshel
Rawan Alatawna
Björn Menten
et al.
C3
Conference
2019
Noncoding structural variants disrupt the regulatory architecture of Rett genes
Eva D'haene
Reut Bar-Yaacov
Inbar Bariah
Lies Vantomme
Sien Van Loo
Francisco Avila Cobos
Karen Verboom
Reut Eshel
Rawan Alatawna
Björn Menten
et al.
C3
Conference
2019
Purification of high-quality RNA from a small number of fluorescence activated cell sorted zebrafish cells for RNA sequencing purposes
Siebe Loontiens
Lisa Depestel
Suzanne Vanhauwaert
Givani Dewyn
Charlotte Gistelinck
Karen Verboom
Wouter Van Loocke
Filip Matthijssens
Andy Willaert
Jo Vandesompele
et al.
A1
Journal Article
in
BMC GENOMICS
2019
SMARTer single cell total RNA sequencing
Karen Verboom
Celine Everaert
Nathalie Bolduc
Kenneth Livak
Nurten Yigit
Dries Rombaut
Jasper Anckaert
Morten Venø
Jørgen Kjems
Franki Speleman
et al.
C3
Conference
2019
SMARTer single cell total RNA-sequencing
Karen Verboom
Celine Everaert
Nathalie Bolduc
Kenneth Livak
Nurten Yigit
Dries Rombaut
Jasper Anckaert
Simon Lee
Morten Venø
Jørgen Kjems
et al.
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2019
SOX11 as mediator of the adrenergic cell state in NB
Bieke Decaesteker
Amber Louwagie
Sara De Brouwer
Volodimir Olexiouk
Geertrui Denecker
Carolina de Carvalho Nunes
Karen Verboom
Moritz Gartlgruber
Wouter Van Loocke
Elena Afanasyeva
et al.
C3
Conference
2019
SOX11 is a key epigenetic regulator in the adrenergic MYCN amplified neuroblastoma
Amber Louwagie
Bieke Decaesteker
Sara De Brouwer
Geertrui Denecker
Carolina de Carvalho Nunes
Volodimir Olexiouk
Karen Verboom
Moritz Gartlgruber
Wouter Van Loocke
Elena Afanasyeva
et al.
C3
Conference
2019
SOX11 is a key epigenetic regulator in the adrenergic MYCN amplified neuroblastoma
Amber Louwagie
Bieke Decaesteker
Carolina de Carvalho Nunes
Geertrui Denecker
Volodimir Olexiouk
Karen Verboom
Moritz Gartlgruber
Wouter Van Loocke
Elena Afanasyeva
Pauline Depuydt
et al.
C3
Conference
2019
2018
A comprehensive inventory of TLX1 controlled long non-coding RNAs in T-cell acute lymphoblastic leukemia through polyA+ and total RNA sequencing
Karen Verboom
Wouter Van Loocke
Pieter-Jan Volders
Bieke Decaesteker
Francisco Avila Cobos
Simon Bornschein
Charles E de Bock
Zeynep Kalender Atak
Emmanuelle Clappier
Stein Aerts
et al.
A1
Journal Article
in
HAEMATOLOGICA
2018
A neuronal enhancer network upstream of MEF2C is compromised in patients with Rett-like characteristics
Eva D'haene
Reut Bar-Yaacov
Inbar Bariah
Lies Vantomme
Sien Van Loo
Francisco Avila Cobos
Karen Verboom
Reut Eshel
Rawan Alatawna
Björn Menten
et al.
C3
Conference
2018
Isolation of high-quality RNA from fluorescent activated cell sorted (FACS) zebrafish cells for RNA sequencing purposes
Siebe Loontiens
Suzanne Vanhauwaert
Lisa Depestel
Givani Dewyn
Charlotte Gistelinck
Karen Verboom
Els Janssens
Filip Matthijssens
Andy Willaert
Jo Vandesompele
et al.
C3
Conference
2018
TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets
Bieke Decaesteker
Geertrui Denecker
Christophe Van Neste
Emmy M Dolman
Wouter Van Loocke
Moritz Gartlgruber
Carolina de Carvalho Nunes
Fanny De Vloed
Pauline Depuydt
Karen Verboom
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2018
TLX1 controlled long non-coding RNAs in T-cell acute lymphoblastic leukemia
Karen Verboom
Wouter Van Loocke
Jo Vandesompele
Niels Vandamme
Geert Berx
Liesbet Martens
Yvan Saeys
Pieter Van Vlierberghe
Franki Speleman
Kaat Durinck
C3
Conference
2018
The TLX1 oncogene modules the enhancer RNA landscape in T-ALL
Karen Verboom
Wouter Van Loocke
Jo Vandesompele
Niels Vandamme
Geert Berx
Yvan Saeys
Liesbet Martens
Pieter Van Vlierberghe
Franki Speleman
Kaat Durinck
C3
Conference
2018
2017
The TLX1 oncogene modulates the enhancer RNA landscape in T-ALL
Karen Verboom
Kaat Durinck
Matthias De Decker
Wouter Van Loocke
Filip Matthijssens
Jean-Jacques Soulier
Wouter De Laat
Tom Taghon
Pieter Van Vlierberghe
Franki Speleman
C3
Conference
2017
2016
Dissecting the NOTCH1 driven transcriptional landscape in T-cell acute lymphoblastic leukemia at single cell level
Karen Verboom
Kaat Durinck
Celine Everaert
Robrecht Cannoodt
Pieter Van Vlierberghe
Jo Vandesompele
Franki Speleman
C3
Conference
2016
The T-ALL oncogene TLX1 controls enhancer lncRNA expression
Karen Verboom
Kaat Durinck
Wouter Van Loocke
Filip Matthijssens
Inge Van de Walle
Annelynn Wallaert
Pieter-Jan Volders
Nadine Van Roy
Yves Benoit
Bruce Poppe
et al.
C3
Conference
2016