Research Explorer

Your browser does not support JavaScript or JavaScript is not enabled. Without JavaScript some functions of this webapplication may be disabled or cause error messages. To enable JavaScript, please consult the manual of your browser or contact your system administrator.

Researcher

Jeroen Gilis

Awards & Distinctions

8 Results

2024

Juggling offsets unlocks RNA-seq tools for fast scalable differential usage, aberrant splicing and expression analyses

Alexandre SegersJeroen GilisMattias Van HeetveldeElfride De BaereLieven Clement

Methods for differential expression analysis in single-cell transcriptomics at the gene- and subgene level

Jeroen GilisLieven ClementYvan SaeysKoen Van den Berge

2023

Differential detection workflows for multi-sample single-cell RNA-seq data

Jeroen GilisLaura PerinMilan MalfaitKoen Van den BergeAlemu Takele AssefaBie VerbistDavide RissoLieven Clement

Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

Anthony SonrelAlmut LuetgeCharlotte SonesonIzaskun MallonaPierre-Luc GermainSergey KnyazevJeroen GilisReto GerberRuth SeurinckDominique Paul et al.

A1 Journal Article in GENOME BIOLOGY

MultiNicheNet : a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

Robin BrowaeysJeroen GilisChananchida Sang-aramPieter De BleserLevi HosteSimon TavernierDiether LambrechtsRuth SeurinckYvan Saeys

2021

satuRn : Scalable Analysis of differential Transcript Usage for bulk and single-cell RNA-sequencing applications

Jeroen GilisKristoffer Vitting-SeerupKoen Van den BergeLieven Clement

satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications

Jeroen GilisKristoffer Vitting-SeerupKoen Van den BergeLieven Clement

A2 Journal Article in F1000RESEARCH

2020

Pitfalls in re-analysis of observational omics studies: a post-mortem of the human pathology atlas

Jeroen GilisSteff TaelmanLucas DaveyLennart MartensLieven Clement