Research Explorer

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Researcher

Jeroen Gilis

Awards & Distinctions

7 Results

2024

Methods for differential expression analysis in single-cell transcriptomics at the gene- and subgene level

Jeroen GilisLieven ClementYvan SaeysKoen Van den Berge

2023

Juggling offsets unlocks RNA-seq tools for fast scalable differential usage, aberrant splicing and expression analyses

Alexandre SegersJeroen GilisMattias Van HeetveldeElfride De BaereLieven Clement

Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

Anthony SonrelAlmut LuetgeCharlotte SonesonIzaskun MallonaPierre-Luc GermainSergey KnyazevJeroen GilisReto GerberRuth SeurinckDominique Paul et al.

A1 Journal Article in GENOME BIOLOGY

MultiNicheNet : a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

Robin BrowaeysJeroen GilisChananchida Sang-aramPieter De BleserLevi HosteSimon TavernierDiether LambrechtsRuth SeurinckYvan Saeys

2021

satuRn : Scalable Analysis of differential Transcript Usage for bulk and single-cell RNA-sequencing applications

Jeroen GilisKristoffer Vitting-SeerupKoen Van den BergeLieven Clement

satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications

Jeroen GilisKristoffer Vitting-SeerupKoen Van den BergeLieven Clement

A2 Journal Article in F1000RESEARCH

2020

Pitfalls in re-analysis of observational omics studies: a post-mortem of the human pathology atlas

Jeroen GilisSteff TaelmanLucas DaveyLennart MartensLieven Clement