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Onderzoeker
Jasper Anckaert
Profiel
Projecten
Publicaties
Activiteiten
Prijzen & Erkenningen
49
Resultaten
2024
A co-culture model to study modulators of tumor immune evasion through scalable arrayed CRISPR-interference screens
Ramiro Martinez
Chiara Finocchiaro
Louis Delhaye
Fien Gysens
Jasper Anckaert
Wim Trypsteen
Maarten Versteven
Eva Lion
Sandra Van Lint
Karim Vermaelen
et al.
A1
Artikel in een tijdschrift
in
FRONTIERS IN IMMUNOLOGY
2024
Characterizing the cell-free transcriptome in a humanized diffuse large B-cell lymphoma patient-derived tumor xenograft model for RNA-based liquid biopsy in a preclinical setting
Philippe Decruyenaere
Willem Daneels
Annelien Morlion
Kimberly Verniers
Jasper Anckaert
Jan Tavernier
Fritz Offner
Jo Vandesompele
A1
Artikel in een tijdschrift
in
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
2024
HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening
Carolina de Carvalho Nunes
Jasper Anckaert
Fanny De Vloed
Jolien De Wyn
Kaat Durinck
Jo Vandesompele
Franki Speleman
Vanessa Vermeirssen
A1
Artikel in een tijdschrift
in
PLOS ONE
2024
Transcriptomic signatures of human single skeletal muscle fibers in response to high-intensity interval exercise
Thibaux Van der Stede
Alexia Van de Loock
Eline Lievens
Nurten Yigit
Jasper Anckaert
Ruud Van Thienen
Anneleen Weyns
Pieter Mestdagh
Jo Vandesompele
Wim Derave
A1
Artikel in een tijdschrift
in
AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
2024
2023
Dramatic impact of blood collection tube and RNA purification method on extracellular RNA transcriptomes
Jasper Anckaert
Francisco Avila Cobos
Anneleen Decock
Philippe Decruyenaere
Jill Deleu
Katleen De Preter
Olivier De Wever
Jilke De Wilde
Bert Dhondt
Thibaut D'huyvetter
et al.
C3
Conferentie
2023
Exploration of neuroblastoma xenograft models for the analysis of tumoral cell-free RNA in murine blood plasma
Jill Deleu
Hanne Van Droogenbroeck
Jasper Anckaert
Jilke De Wilde
Kaat Durinck
Liselot Mus
Justine Nuytens
Muhammad Rishfi
Kathleen Schoofs
Franki Speleman
et al.
C3
Conferentie
2023
Exploration of neuroblastoma xenograft models for tumor extracellular RNA profiling in murine blood plasma
Jill Deleu
Hanne Van Droogenbroeck
Jasper Anckaert
Anneleen Decock
Jilke De Wilde
Kaat Durinck
Liselot Mus
Justine Nuytens
Muhammad Rishfi
Kathleen Schoofs
et al.
A2
Artikel in een tijdschrift
in
EXRNA
2023
Exploring the cell-free total RNA transcriptome in diffuse large B-cell lymphoma and primary mediastinal B-cell lymphoma patients as biomarker source in blood plasma liquid biopsies
Philippe Decruyenaere
Edoardo Giuili
Kimberly Verniers
Jasper Anckaert
Katrien De Grove
Malaïka Van der Linden
Dries Deeren
Jo Van Dorpe
Fritz Offner
Jo Vandesompele
A1
Artikel in een tijdschrift
in
FRONTIERS IN ONCOLOGY
2023
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
Marieke Vromman
Jasper Anckaert
Stefania Bortoluzzi
Alessia Buratin
Chia-Ying Chen
Qinjie Chu
Trees-Juen Chuang
Roozbeh Dehghannasiri
Christoph Dieterich
Xin Dong
et al.
A1
Artikel in een tijdschrift
in
NATURE METHODS
2023
Mammalian target of rapamycin inhibition enhances delivery and activity of antisense oligonucleotides in uveal melanoma cells
Shanna Dewaele
Louis Delhaye
Boel De Paepe
Bram Bogaert
Ramiro Martinez
Jasper Anckaert
Nurten Yigit
Justine Nuytens
Rudy Van Coster
Sven Eyckerman
et al.
A1
Artikel in een tijdschrift
in
NUCLEIC ACID THERAPEUTICS
2023
Pan-cancer blood plasma cell-free RNA profiles reveal cancer type and patient-specific changes
Annelien Morlion
Philippe Decruyenaere
Kathleen Schoofs
Jasper Anckaert
Justine Nuytens
Eveline Vanden Eynde
Kimberly Verniers
Celine Everaert
Fritz Offner
Jo Van Dorpe
et al.
C3
Conferentie
2023
Performance evaluation of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study
Anneleen Decock
Olivier De Wever
Celine Everaert
Hetty Helsmoortel
An Hendrix
Pieter Mestdagh
Annelien Morlion
Jo Vandesompele
Ruben Van Paemel
Francisco Avila Cobos
et al.
C3
Conferentie
2023
Performance evaluation of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study
Anneleen Decock
Olivier De Wever
Celine Everaert
Hetty Helsmoortel
An Hendrix
Pieter Mestdagh
Annelien Morlion
Jo Vandesompele
Ruben Van Paemel
Francisco Avila Cobos
et al.
C3
Conferentie
2023
Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA
Vanessa Vermeirssen
Jill Deleu
Annelien Morlion
Celine Everaert
Jilke De Wilde
Jasper Anckaert
Kaat Durinck
Justine Nuytens
Muhammad Rishfi
Franki Speleman
et al.
C3
Conferentie
2023
2022
A 3′‐end capture sequencing method for high‐throughput targeted gene expression profiling
Eric de Bony de Lavergne
Fien Gysens
Nurten Yigit
Jasper Anckaert
Celine Everaert
Eveline Vanden Eynde
Kimberly Verniers
Willem van Snippenberg
Wim Trypsteen
Pieter Mestdagh
A1
Artikel in een tijdschrift
in
BIOTECHNOLOGY JOURNAL
2022
CIRCprimerXL : convenient and high-throughput PCR primer design for circular RNA quantification
Marieke Vromman
Jasper Anckaert
Jo Vandesompele
Pieter-Jan Volders
A2
Artikel in een tijdschrift
in
FRONTIERS IN BIOINFORMATICS
2022
CiLiQuant : quantification of RNA junction reads based on their circular or linear transcript origin
Annelien Morlion
Eva Hulstaert
Marieke Vromman
Jasper Anckaert
Celine Everaert
Jo Vandesompele
Pieter Mestdagh
A2
Artikel in een tijdschrift
in
FRONTIERS IN BIOINFORMATICS
2022
Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions
Kathleen Schoofs
Annouck Philippron
Francisco Avila Cobos
Jan Koster
Steve Lefever
Jasper Anckaert
Danny De Looze
Jo Vandesompele
Piet Pattyn
Katleen De Preter
A1
Artikel in een tijdschrift
in
SCIENTIFIC DATA
2022
HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening
Carolina de Carvalho Nunes
Jasper Anckaert
Fanny De Vloed
Jolien De Wyn
Kaat Durinck
Jo Vandesompele
Franki Speleman
Vanessa Vermeirssen
Preprint
2022
IL-10 producing regulatory B cells are decreased in blood from smokers and COPD patients
Merel Jacobs
Sven Verschraegen
Bihiyga Salhi
Jasper Anckaert
Pieter Mestdagh
Guy Brusselle
Ken Bracke
A1
Artikel in een tijdschrift
in
RESPIRATORY RESEARCH
2022
Performance evaluation of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study
Jasper Anckaert
Francisco Avila Cobos
Anneleen Decock
Philippe Decruyenaere
Jill Deleu
Katleen De Preter
Olivier De Wever
Jilke De Wilde
Bert Dhondt
Thibaut D'huyvetter
et al.
Preprint
2022
RNA biomarkers from proximal liquid biopsy for diagnosis of ovarian cancer
Eva Hulstaert
Keren Levanon
Annelien Morlion
Stefan Van Aelst
Anthony-Alexander Christidis
Ruben Zamar
Jasper Anckaert
Kimberly Verniers
Keren Bahar-Shany
Stav Sapoznik
et al.
A1
Artikel in een tijdschrift
in
NEOPLASIA
2022
The adrenergic-specific long non-coding RNA NESPR controls survival of neuroblastoma cells
Louis Delhaye
Eric de Bony de Lavergne
Dries Rombaut
Lim Fang Qi
Bieke Decaesteker
Lisa Depestel
Amber Louwagie
Eva D'haene
Pieter-Jan Volders
Nurten Yigit
et al.
C3
Conferentie
2022
The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival
Shanna Dewaele
Louis Delhaye
Boel De Paepe
Eric de Bony de Lavergne
Jilke De Wilde
Katrien Vanderheyden
Jasper Anckaert
Nurten Yigit
Justine Nuytens
Eveline Vanden Eynde
et al.
A1
Artikel in een tijdschrift
in
ONCOGENE
2022
The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival (Sept, 10.1038/s41388-021-02006-x, 2021)
Shanna Dewaele
Louis Delhaye
Boel De Paepe
Eric James de Bony
Jilke De Wilde
Katrien Vanderheyden
Jasper Anckaert
Nurten Yigit
Justine Nuytens
Eveline Vanden Eynde
et al.
Correctie
2022
Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA
Vanessa Vermeirssen
Jill Deleu
Annelien Morlion
Celine Everaert
Jilke De Wilde
Jasper Anckaert
Kaat Durinck
Justine Nuytens
Muhammad Rishfi
Franki Speleman
et al.
A2
Artikel in een tijdschrift
in
NAR CANCER
2022
mRNA capture sequencing and RT-qPCR for the detection of pathognomonic, novel, and secondary fusion transcripts in FFPE tissue : a sarcoma showcase
Anneleen Decock
David Creytens
Steve Lefever
Joni Van der Meulen
Jasper Anckaert
Ariane De Ganck
Jill Deleu
Bram De Wilde
Carolina Fierro
Scott Kuersten
et al.
A1
Artikel in een tijdschrift
in
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
2022
2021
MISpheroID : a knowledgebase and transparency tool for minimum information in spheroid identity
Arne Peirsman
Eva Blondeel
Tasdiq Ahmed
Jasper Anckaert
Dominique Audenaert
Tom Boterberg
Krisztina Buzas
Neil Carragher
Gastone Castellani
Flávia Castro
et al.
A1
Artikel in een tijdschrift
in
NATURE METHODS
2021
Substantial performance differences among RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study
Anneleen Decock
Olivier De Wever
Celine Everaert
Hetty Helsmoortel
An Hendrix
Pieter Mestdagh
Annelien Morlion
Jo Vandesompele
Ruben Van Paemel
Francisco Avila Cobos
et al.
C3
Conferentie
2021
Substantial performance differences among RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study
Anneleen Decock
Olivier De Wever
Celine Everaert
Hetty Helsmoortel
An Hendrix
Pieter Mestdagh
Annelien Morlion
Jo Vandesompele
Ruben Van Paemel
Francisco Avila Cobos
et al.
C3
Conferentie
2021
The MicroRNA landscape of acute beta cell destruction in type 1 diabetic recipients of intraportal islet grafts
Geert Martens
Geert Stangé
Lorenzo Piemonti
Jasper Anckaert
Zhidong Ling
Daniel G. Pipeleers
Frans K. Gorus
Pieter Mestdagh
Dieter De Smet
Jo Vandesompele
et al.
A1
Artikel in een tijdschrift
in
CELLS
2021
The RNA Atlas expands the catalog of human non-coding RNAs
Lucia Lorenzi
Hua-Sheng Chiu
Francisco Avila Cobos
Stephen Gross
Pieter-Jan Volders
Robrecht Cannoodt
Justine Nuytens
Katrien Vanderheyden
Jasper Anckaert
Steve Lefever
et al.
A1
Artikel in een tijdschrift
in
NATURE BIOTECHNOLOGY
2021
The RNA Atlas expands the catalog of human non-coding RNAs (June, 10.1038/s41587-021-00936-1, 2021)
Lucia Lorenzi
Hua-Sheng Chiu
Francisco Avila Cobos
Stephen Gross
Pieter-Jan Volders
Robrecht Cannoodt
Justine Nuytens
Katrien Vanderheyden
Jasper Anckaert
Steve Lefever
et al.
Correctie
2021
Whole transcriptome profiling of liquid biopsies from tumor xenografted mouse models enables specific monitoring of tumor-derived RNA
Vanessa Vermeirssen
Jill Deleu
Celine Everaert
Annelien Morlion
Kimberly Verniers
Jasper Anckaert
Jo Vandesompele
Tom Van Maerken
Anneleen Decock
Bram De Wilde
C3
Conferentie
2021
2020
Charting extracellular transcriptomes in the human biofluid RNA atlas
Eva Hulstaert
Annelien Morlion
Francisco Avila Cobos
Kimberly Verniers
Justine Nuytens
Eveline Vanden Eynde
Nurten Yigit
Jasper Anckaert
Anja Geerts
Pieter Hindryckx
et al.
A1
Artikel in een tijdschrift
in
CELL REPORTS
2020
Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles
Celine Everaert
Hetty Helsmoortel
Anneleen Decock
Eva Hulstaert
Ruben Van Paemel
Kimberly Verniers
Justine Nuytens
Jasper Anckaert
Nele Nijs
Joeri Tulkens
et al.
C3
Conferentie
2020
Substantial performance differences among RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control study-important considerations for liquid biopsies
Anneleen Decock
Jasper Anckaert
Celine Everaert
Justine Nuytens
Scott Kuersten
An Hendrix
Jo Vandesompele
Pieter Mestdagh
Bert Dhondt
Ruben Van Paemel
et al.
C3
Conferentie
2020
Whole transcriptome profiling of liquid biopsies from tumor xenografted mouse models enables specific monitoring of tumor-derived RNA
Jill Deleu
Vanessa Vermeirssen
Celine Everaert
Annelien Morlion
Kimberly Verniers
Jasper Anckaert
Jo Vandesompele
Tom Van Maerken
Anneleen Decock
Bram De Wilde
C3
Conferentie
2020
mTor inhibitor GDC-0349 improves ASO induced SAMMSON knock down resulting in enhanced anti-tumor efficacy in uveal melanoma
Shanna Dewaele
Boel De Paepe
Louis Delhaye
Eric de Bony de Lavergne
Jilke De Wilde
Katrien Vanderheyden
Jasper Anckaert
Nurten Yigit
Eveline Vanden Eynde
Fariba Nemati
et al.
C3
Conferentie
2020
mTor inhibitor GDC-0349 improves ASO induced SAMMSON knock down resulting in enhanced anti-tumor efficacy in uveal melanoma
Shanna Dewaele
Boel De Paepe
Louis Delhaye
Eric de Bony de Lavergne
Jilke De Wilde
Katrien Vanderheyden
Jasper Anckaert
Nurten Yigit
Eveline Vanden Eynde
Fariba Nemati
et al.
C3
Conferentie
2020
2019
Dramatic differences in RNA purification kit performance in the extracellular RNA quality control study : important considerations for liquid biopsies
Annelien Morlion
Jasper Anckaert
Francisco Avila Cobos
Anneleen Decock
Olivier De Wever
Bert Dhondt
Celine Everaert
Carolina Fierro
Hetty Helsmoortel
An Hendrix
et al.
C3
Conferentie
2019
Dramatic differences in RNA purification kit performance in the extracellular RNA quality control study : important considerations for liquid biopsies
Annelien Morlion
Jasper Anckaert
Francisco Avila Cobos
Anneleen Decock
Olivier De Wever
Bert Dhondt
Celine Everaert
Carolina Fierro
Hetty Helsmoortel
An Hendrix
et al.
C3
Conferentie
2019
Evaluating the impact of RNA purification kit and blood collection tube in the extracellular RNA quality control study : important considerations for liquid biopsies
Annelien Morlion
Jasper Anckaert
Francisco Avila Cobos
Anneleen Decock
Jill Deleu
Olivier De Wever
Bert Dhondt
Celine Everaert
Carolina Fierro
Hetty Helsmoortel
et al.
C3
Conferentie
2019
LNCipedia 5 : towards a reference set of human long non-coding RNAs
Pieter-Jan Volders
Jasper Anckaert
Kenneth Verheggen
Justine Nuytens
Lennart Martens
Pieter Mestdagh
Jo Vandesompele
A1
Artikel in een tijdschrift
in
NUCLEIC ACIDS RESEARCH
2019
Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles
Celine Everaert
Hetty Helsmoortel
Anneleen Decock
Eva Hulstaert
Ruben Van Paemel
Kimberly Verniers
Justine Nuytens
Jasper Anckaert
Nele Nijs
Joeri Tulkens
et al.
A1
Artikel in een tijdschrift
in
SCIENTIFIC REPORTS
2019
SMARTer single cell total RNA sequencing
Karen Verboom
Celine Everaert
Nathalie Bolduc
Kenneth Livak
Nurten Yigit
Dries Rombaut
Jasper Anckaert
Morten Venø
Jørgen Kjems
Franki Speleman
et al.
C3
Conferentie
2019
SMARTer single cell total RNA-sequencing
Karen Verboom
Celine Everaert
Nathalie Bolduc
Kenneth Livak
Nurten Yigit
Dries Rombaut
Jasper Anckaert
Simon Lee
Morten Venø
Jørgen Kjems
et al.
A1
Artikel in een tijdschrift
in
NUCLEIC ACIDS RESEARCH
2019
The RNA Atlas, a single nucleotide resolution map of the human transcriptome
Lucia Lorenzi
Hua-Sheng Chiu
Francisco Avila Cobos
Stephen Gross
Pieter-Jan Volders
Robrecht Cannoodt
Justine Nuytens
Katrien Vanderheyden
Jasper Anckaert
Steve Lefever
et al.
Preprint
2019
The human biofluid RNA atlas : expanding the liquid biopsy field beyond the blood stream
Eva Hulstaert
Kimberly Verniers
Justine Nuytens
Eveline Vanden Eynde
Nurten Yigit
Jasper Anckaert
Anja Geerts
Peggy Jacques
Guy Brusselle
THIERRY DERVEAUX
et al.
C3
Conferentie
2019