Research Explorer

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Researcher

Jasper Anckaert

28 Results

2022

A 3′‐end capture sequencing method for high‐throughput targeted gene expression profiling

Eric de Bony de LavergneFien GysensNurten YigitJasper AnckaertCeline EveraertEveline Vanden EyndeKimberly VerniersWillem van SnippenbergWim TrypsteenPieter Mestdagh

A1 Journal Article in BIOTECHNOLOGY JOURNAL

CIRCprimerXL : convenient and high-throughput PCR primer design for circular RNA quantification

Marieke VrommanJasper AnckaertJo VandesompelePieter-Jan Volders

A2 Journal Article in FRONTIERS IN BIOINFORMATICS

CiLiQuant : quantification of RNA junction reads based on their circular or linear transcript origin

Annelien MorlionEva HulstaertMarieke VrommanJasper AnckaertCeline EveraertJo VandesompelePieter Mestdagh

A2 Journal Article in FRONTIERS IN BIOINFORMATICS

Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions

Kathleen SchoofsAnnouck PhilippronFrancisco Avila CobosSteve LefeverJasper AnckaertDanny De LoozeJo VandesompelePiet PattynKatleen De Preter

A1 Journal Article in SCIENTIFIC DATA

HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening

Carolina de Carvalho NunesJasper AnckaertFanny De VloedJolien De WynKaat DurinckJo VandesompeleFranki SpelemanVanessa Vermeirssen

RNA biomarkers from proximal liquid biopsy for diagnosis of ovarian cancer

Eva HulstaertAnnelien MorlionJasper AnckaertKimberly VerniersJo VandesompelePieter Mestdagh

A1 Journal Article in NEOPLASIA

The adrenergic-specific long non-coding RNA NESPR controls survival of neuroblastoma cells

Louis DelhayeEric de Bony de LavergneDries RombautBieke DecaestekerLisa DepestelAmber LouwagieEva D'haenePieter-Jan VoldersNurten YigitDelphine De SutterJasper AnckaertSarah-Lee BekaertCeline EveraertBjörn MentenJo VandesompeleSteve LefeverFranki SpelemanSven EyckermanPieter Mestdagh

The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival

Shanna DewaeleLouis DelhayeBoel De PaepeEric de Bony de LavergneJilke De WildeKatrien VanderheydenJasper AnckaertNurten YigitJustine NuytensEveline Vanden EyndeJoél SmetMaxime VerschooreJo VandesompeleJo Van DorpeRudy Van CosterSven EyckermanPieter Mestdagh

A1 Journal Article in ONCOGENE

The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival (Sept, 10.1038/s41388-021-02006-x, 2021)

Shanna DewaeleLouis DelhayeBoel De PaepeJilke De WildeKatrien VanderheydenJasper AnckaertNurten YigitJustine NuytensEveline Vanden EyndeJoél SmetMaxime VerschooreJo VandesompeleJo Van DorpeJean-Christophe MarineRudy Van CosterSven EyckermanPieter Mestdagh

mRNA capture sequencing and RT-qPCR for the detection of pathognomonic, novel, and secondary fusion transcripts in FFPE tissue : a sarcoma showcase

Anneleen DecockDavid CreytensSteve LefeverJoni Van der MeulenJasper AnckaertJill DeleuBram De WildeIsabelle RottiersKatrien VanderheydenEveline Vanden EyndeKimberly VerniersJo Van DorpeJo Vandesompele

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

2021

MISpheroID : a knowledgebase and transparency tool for minimum information in spheroid identity

Arne PeirsmanEva BlondeelJasper AnckaertDominique AudenaertTom BoterbergElly De VlieghereSandor DedeyneHerman DepypereRuslan DmitrievSuzanne FischerVera GoossensAn HendrixSebastiaan MaesChristophe MangodtPieter MestdaghCláudio PinheiroGwen SysJoeri TulkensJo VandesompeleGlenn WagemansNurten YigitPhillip BlondeelOlivier De Wever

A1 Journal Article in NATURE METHODS

The MicroRNA landscape of acute beta cell destruction in type 1 diabetic recipients of intraportal islet grafts

Geert MartensJasper AnckaertPieter MestdaghJo Vandesompele

A1 Journal Article in CELLS

The RNA Atlas expands the catalog of human non-coding RNAs

Lucia LorenziFrancisco Avila CobosPieter-Jan VoldersRobrecht CannoodtJustine NuytensKatrien VanderheydenJasper AnckaertSteve LefeverWim TrypsteenFien GysensMarieke VrommanTine GoovaertsNele NijsTom TaghonKarim VermaelenKen BrackeYvan SaeysTim De MeyerKatleen De PreterJo VandesompelePieter Mestdagh

A1 Journal Article in NATURE BIOTECHNOLOGY

The RNA Atlas expands the catalog of human non-coding RNAs (June, 10.1038/s41587-021-00936-1, 2021)

Francisco Avila CobosPieter-Jan VoldersRobrecht CannoodtJustine NuytensJasper AnckaertSteve LefeverWim TrypsteenFien GysensMarieke VrommanTom TaghonKarim VermaelenKen BrackeYvan SaeysTim De MeyerKatleen De PreterJo VandesompelePieter Mestdagh

2020

Charting extracellular transcriptomes in the human biofluid RNA atlas

Eva HulstaertAnnelien MorlionFrancisco Avila CobosKimberly VerniersJustine NuytensEveline Vanden EyndeNurten YigitJasper AnckaertAnja GeertsPieter HindryckxPeggy JacquesGuy BrusselleKen BrackeTania MaesCaroline Van CauwenberghKristien RoelensEllen RoetsDimitri HemelsoetKelly TillemanLieve BrochezSteve LefeverJo VandesompelePieter Mestdagh

A1 Journal Article in CELL REPORTS

Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

Celine EveraertHetty HelsmoortelAnneleen DecockEva HulstaertRuben Van PaemelKimberly VerniersJustine NuytensJasper AnckaertJoeri TulkensBert DhondtAn HendrixPieter MestdaghJo Vandesompele

Substantial performance differences among RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control study-important considerations for liquid biopsies

Anneleen DecockJasper AnckaertCeline EveraertJustine NuytensAn HendrixJo VandesompelePieter MestdaghBert DhondtRuben Van PaemelKimberly VerniersNurten YigitKathleen SchoofsAnnelien MorlionJill DeleuEva HulstaertFrancisco Avila CobosEveline Vanden EyndeHetty HelsmoortelOlivier De WeverAnnouck Philippron

mTor inhibitor GDC-0349 improves ASO induced SAMMSON knock down resulting in enhanced anti-tumor efficacy in uveal melanoma

Shanna DewaeleBoel De PaepeLouis DelhayeEric de Bony de LavergneJilke De WildeKatrien VanderheydenJasper AnckaertNurten YigitEveline Vanden EyndeSven EyckermanRudy Van CosterPieter Mestdagh

mTor inhibitor GDC-0349 improves ASO induced SAMMSON knock down resulting in enhanced anti-tumor efficacy in uveal melanoma

Shanna DewaeleBoel De PaepeLouis DelhayeEric de Bony de LavergneJilke De WildeJasper AnckaertNurten YigitEveline Vanden EyndeOlivier De WeverSven EyckermanRudy Van CosterPieter Mestdagh

2019

Dramatic differences in RNA purification kit performance in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockOlivier De WeverBert DhondtCeline EveraertHetty HelsmoortelAn HendrixEva HulstaertPieter MestdaghJustine NuytensAnnouck PhilippronEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

Dramatic differences in RNA purification kit performance in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockOlivier De WeverBert DhondtCeline EveraertHetty HelsmoortelAn HendrixEva HulstaertPieter MestdaghJustine NuytensAnnouck PhilippronEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

Evaluating the impact of RNA purification kit and blood collection tube in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockJill DeleuOlivier De WeverBert DhondtCeline EveraertHetty HelsmoortelAn HendrixEva HulstaertPieter MestdaghJustine NuytensAnnouck PhilippronKathleen SchoofsEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

LNCipedia 5 : towards a reference set of human long non-coding RNAs

Pieter-Jan VoldersJasper AnckaertKenneth VerheggenJustine NuytensLennart MartensPieter MestdaghJo Vandesompele

A1 Journal Article in NUCLEIC ACIDS RESEARCH

Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

Celine EveraertHetty HelsmoortelAnneleen DecockEva HulstaertRuben Van PaemelKimberly VerniersJustine NuytensJasper AnckaertNele NijsJoeri TulkensBert DhondtAn HendrixPieter MestdaghJo Vandesompele

A1 Journal Article in SCIENTIFIC REPORTS

SMARTer single cell total RNA sequencing

Karen VerboomCeline EveraertNurten YigitDries RombautJasper AnckaertFranki SpelemanPieter MestdaghJo Vandesompele

SMARTer single cell total RNA-sequencing

Karen VerboomCeline EveraertNurten YigitDries RombautJasper AnckaertFranki SpelemanPieter MestdaghJo Vandesompele

A1 Journal Article in NUCLEIC ACIDS RESEARCH

The RNA Atlas, a single nucleotide resolution map of the human transcriptome

Lucia LorenziFrancisco Avila CobosPieter-Jan VoldersRobrecht CannoodtJustine NuytensJasper AnckaertSteve LefeverTine GoovaertsTom TaghonKarim VermaelenKen BrackeTim De MeyerKatleen De PreterJo VandesompelePieter Mestdagh

The human biofluid RNA atlas : expanding the liquid biopsy field beyond the blood stream

Eva HulstaertKimberly VerniersJustine NuytensEveline Vanden EyndeNurten YigitJasper AnckaertAnja GeertsPeggy JacquesGuy BrusselleCaroline Van CauwenberghKristien RoelensEllen RoetsPaul RamaekersDimitri HemelsoetPieter HindryckxJo VandesompelePieter Mestdagh