Research Explorer

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Researcher

Jasper Anckaert

23 Results

2022

CIRCprimerXL : convenient and high-throughput PCR primer design for circular RNA quantification

Marieke VrommanJasper AnckaertJo VandesompelePieter-Jan Volders

A2 Journal Article in FRONTIERS IN BIOINFORMATICS

CiLiQuant : quantification of RNA junction reads based on their circular or linear transcript origin

Annelien MorlionEva HulstaertMarieke VrommanJasper AnckaertCeline EveraertJo VandesompelePieter Mestdagh

A2 Journal Article in FRONTIERS IN BIOINFORMATICS

Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions

Kathleen SchoofsAnnouck PhilippronFrancisco Avila CobosJan KosterSteve LefeverJasper AnckaertDanny De LoozeJo VandesompelePiet PattynKatleen De Preter

A1 Journal Article in SCIENTIFIC DATA

RNA biomarkers from proximal liquid biopsy for diagnosis of ovarian cancer

Eva HulstaertKeren LevanonAnnelien MorlionStefan Van AelstAnthony-Alexander ChristidisRuben ZamarJasper AnckaertKimberly VerniersKeren Bahar-ShanyStav SapoznikJo VandesompelePieter Mestdagh

A1 Journal Article in NEOPLASIA

The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival

Shanna DewaeleLouis DelhayeBoel De PaepeEric de Bony de LavergneJilke De WildeKatrien VanderheydenJasper AnckaertNurten YigitJustine NuytensEveline Vanden EyndeJoél SmetMaxime VerschooreFariba NematiDidier DecaudinManuel RodriguesPeihua ZhaoAart JochemsenEleonora LeucciJo VandesompeleJo Van DorpeJean-Christophe MarineRudy Van CosterSven EyckermanPieter Mestdagh

A1 Journal Article in ONCOGENE

The long non-coding RNA SAMMSON is essential for uveal melanoma cell survival (Sept, 10.1038/s41388-021-02006-x, 2021)

Shanna DewaeleLouis DelhayeBoel De PaepeEric James de BonyJilke De WildeKatrien VanderheydenJasper AnckaertNurten YigitJustine NuytensEveline Vanden EyndeJoél SmetMaxime VerschooreFariba NematiDidier DecaudinManuel RodriguesPeihua ZhaoAart JochemsenEleonora LeucciJo VandesompeleJo Van DorpeJean-Christophe MarineRudy Van CosterSven EyckermanPieter Mestdagh

2021

MISpheroID : a knowledgebase and transparency tool for minimum information in spheroid identity

Arne PeirsmanEva BlondeelTasdiq AhmedJasper AnckaertDominique AudenaertTom BoterbergKrisztina BuzasNeil CarragherGastone CastellaniFlávia CastroVirginie Dangles-MarieJohn DawsonPascal De TullioElly De VlieghereSandor DedeyneHerman DepypereAkos DiosdiRuslan DmitrievHelmut DolznigSuzanne FischerChristian GespachVera GoossensJyrki HeinoAn HendrixPeter HorvathLeoni A. Kunz-SchughartSebastiaan MaesChristophe MangodtPieter MestdaghSoňa MichlíkováMaria José OliveiraFrancesco PampaloniFilippo PiccininiCláudio PinheiroJennifer RahnStephen M. RobbinsElina SiljamäkiPatrick SteigemannGwen SysShuichi TakayamaAnna TeseiJoeri TulkensMichiel Van WaeyenbergeJo VandesompeleGlenn WagemansClaudia WeindorferNurten YigitNina ZablowskyMichele ZanoniPhillip BlondeelOlivier De Wever

A1 Journal Article in NATURE METHODS

The MicroRNA landscape of acute beta cell destruction in type 1 diabetic recipients of intraportal islet grafts

Geert MartensGeert StangéLorenzo PiemontiJasper AnckaertZhidong LingDaniel G. PipeleersFrans K. GorusPieter MestdaghDieter De SmetJo VandesompeleBart KeymeulenSarah Roels

A1 Journal Article in CELLS

The RNA Atlas expands the catalog of human non-coding RNAs

Lucia LorenziHua-Sheng ChiuFrancisco Avila CobosStephen GrossPieter-Jan VoldersRobrecht CannoodtJustine NuytensKatrien VanderheydenJasper AnckaertSteve LefeverAidan TayEric de BonyWim TrypsteenFien GysensMarieke VrommanTine GoovaertsThomas Birkballe HansenScott KuerstenNele NijsTom TaghonKarim VermaelenKen BrackeYvan SaeysTim De MeyerNandan P. DeshpandeGovardhan AnandeTing-Wen ChenMarc R. WilkinsAshwin UnnikrishnanKatleen De PreterJørgen KjemsJan KosterGary P. SchrothJo VandesompelePavel SumazinPieter Mestdagh

A1 Journal Article in NATURE BIOTECHNOLOGY

2020

Charting extracellular transcriptomes in the human biofluid RNA atlas

Eva HulstaertAnnelien MorlionFrancisco Avila CobosKimberly VerniersJustine NuytensEveline Vanden EyndeNurten YigitJasper AnckaertAnja GeertsPieter HindryckxPeggy JacquesGuy BrusselleKen BrackeTania MaesThomas MalfaitThierry DerveauxVirginie NinclausCaroline Van CauwenberghKristien RoelensEllen RoetsDimitri HemelsoetKelly TillemanLieve BrochezS KuerstenLM SimonS KargA Kautzky-WillersM LeutnerC NöhammerO SlabyRW PrinsJ KosterSteve LefeverGP SchrothJo VandesompelePieter Mestdagh

A1 Journal Article in CELL REPORTS

Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

Celine EveraertHetty HelsmoortelAnneleen DecockEva HulstaertRuben Van PaemelKimberly VerniersJustine NuytensJasper AnckaertNele NijsJoeri TulkensBert DhondtAn HendrixPieter MestdaghJo Vandesompele

Substantial performance differences among RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control study-important considerations for liquid biopsies

Anneleen DecockJasper AnckaertCeline EveraertJustine NuytensScott KuerstenAn HendrixJo VandesompelePieter MestdaghBert DhondtRuben Van PaemelKimberly VerniersGary SchrothCarolina FierroNurten YigitKathleen SchoofsAnnelien MorlionJill DeleuEva HulstaertFrancisco Avila CobosNele NijsEveline Vanden EyndeHetty HelsmoortelOlivier De WeverAnnouck Philippron

mTor inhibitor GDC-0349 improves ASO induced SAMMSON knock down resulting in enhanced anti-tumor efficacy in uveal melanoma

Shanna DewaeleBoel De PaepeLouis DelhayeEric de Bony de LavergneJilke De WildeKatrien VanderheydenJasper AnckaertNurten YigitEveline Vanden EyndeFariba NematiDidier DecaudinAart JochemsenEleonora LeucciChris MarineSven EyckermanRudy Van CosterPieter Mestdagh

mTor inhibitor GDC-0349 improves ASO induced SAMMSON knock down resulting in enhanced anti-tumor efficacy in uveal melanoma

Shanna DewaeleBoel De PaepeLouis DelhayeEric de Bony de LavergneJilke De WildeKatrien VanderheydenJasper AnckaertNurten YigitEveline Vanden EyndeFariba NematiDidier DecaudinAart JochemsenOlivier De WeverEleonora LeucciChris MarineSven EyckermanRudy Van CosterPieter Mestdagh

2019

Dramatic differences in RNA purification kit performance in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockOlivier De WeverBert DhondtCeline EveraertCarolina FierroHetty HelsmoortelAn HendrixEva HulstaertScott KuerstenPieter MestdaghNele NijsJustine NuytensAnnouck PhilippronGary SchrothEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

Dramatic differences in RNA purification kit performance in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockOlivier De WeverBert DhondtCeline EveraertCarolina FierroHetty HelsmoortelAn HendrixEva HulstaertScott KuerstenPieter MestdaghNele NijsJustine NuytensAnnouck PhilippronGary SchrothEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

Evaluating the impact of RNA purification kit and blood collection tube in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockJill DeleuOlivier De WeverBert DhondtCeline EveraertCarolina FierroHetty HelsmoortelAn HendrixEva HulstaertScott KuerstenPieter MestdaghNele NijsJustine NuytensAnnouck PhilippronKathleen SchoofsGary SchrothEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

LNCipedia 5 : towards a reference set of human long non-coding RNAs

Pieter-Jan VoldersJasper AnckaertKenneth VerheggenJustine NuytensLennart MartensPieter MestdaghJo Vandesompele

A1 Journal Article in NUCLEIC ACIDS RESEARCH

Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

Celine EveraertHetty HelsmoortelAnneleen DecockEva HulstaertRuben Van PaemelKimberly VerniersJustine NuytensJasper AnckaertNele NijsJoeri TulkensBert DhondtAn HendrixPieter MestdaghJo Vandesompele

A1 Journal Article in SCIENTIFIC REPORTS

SMARTer single cell total RNA sequencing

Karen VerboomCeline EveraertNathalie BolducKenneth LivakNurten YigitDries RombautJasper AnckaertMorten VenøJørgen KjemsFranki SpelemanPieter MestdaghJo Vandesompele

SMARTer single cell total RNA-sequencing

Karen VerboomCeline EveraertNathalie BolducKenneth LivakNurten YigitDries RombautJasper AnckaertSimon LeeMorten VenøJørgen KjemsFranki SpelemanPieter MestdaghJo Vandesompele

A1 Journal Article in NUCLEIC ACIDS RESEARCH

The RNA Atlas, a single nucleotide resolution map of the human transcriptome

Lucia LorenziHua-Sheng ChiuFrancisco Avila CobosStephen GrossPieter-Jan VoldersRobrecht CannoodtJustine NuytensKatrien VanderheydenJasper AnckaertSteve LefeverTine GoovaertsThomas Birkballe HansenScott KuerstenNele NijsTom TaghonKarim VermaelenKen BrackeYvan SaeysTim De MeyerNandan DeshpandeGovardhan AnandeTing-Wen ChenMarc R. WilkinsAshwin UnnikrishnanKatleen De PreterJørgen KjemsJan KosterGary P. SchrothJo VandesompelePavel SumazinPieter Mestdagh

The human biofluid RNA atlas : expanding the liquid biopsy field beyond the blood stream

Eva HulstaertKimberly VerniersJustine NuytensEveline Vanden EyndeNurten YigitJasper AnckaertAnja GeertsPeggy JacquesGuy BrusselleThierry DerveauxVirginie NinclausCaroline Van CauwenberghKristien RoelensEllen RoetsPaul RamaekersThomas MalfaitDimitri HemelsoetPieter HindryckxJo VandesompelePieter Mestdagh