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Onderzoeker
Dieter De Coninck
Profiel
Projecten
Publicaties
Activiteiten
Prijzen & Erkenningen
41
Resultaten
2018
Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes : a comparative evaluation of upstream whole-genome amplification methods
Lieselot Deleye
Yannick Gansemans
Dieter De Coninck
Filip Van Nieuwerburgh
Dieter Deforce
A1
Artikel in een tijdschrift
in
PLOS ONE
2018
2017
Bisulfite sequencing with Daphnia highlights a role for epigenetics in regulating stress response to Microcystis through preferential differential methylation of serine and threonine amino acids
Jana Asselman
Dieter De Coninck
Eline Beert
Colin Janssen
Luisa Orsini
Michael E Pfrender
Ellen Decaestecker
Karel De Schamphelaere
A1
Artikel in een tijdschrift
in
ENVIRONMENTAL SCIENCE & TECHNOLOGY
2017
Direct comparison of distinct naive pluripotent states in human embryonic stem cells
Sharat Warrier
Margot Van der Jeught
Galbha Duggal
Laurentijn Tilleman
Ella Sutherland
Jasin Taelman
Mina Popovic
Sylvie Lierman
Susana Marina Chuva de Sousa Lopes
Ann Van Soom
et al.
A1
Artikel in een tijdschrift
in
NATURE COMMUNICATIONS
2017
Infections of virulent and avirulent viruses differentially influenced the expression of dicer-1, ago-1, and microRNAs in Bombus terrestris
Jinzhi Niu
Ivan Meeus
Dieter De Coninck
Dieter Deforce
Kayvan Etebari
Sassan Asgari
Guy Smagghe
A1
Artikel in een tijdschrift
in
SCIENTIFIC REPORTS
2017
Microbial community profiling of fresh basil and pitfalls in taxonomic assignment of enterobacterial pathogenic species based upon 16S rRNA
Siele Ceuppens
Dieter De Coninck
Nadine Bottledoorn
Filip Van Nieuwerburgh
Mieke Uyttendaele
A1
Artikel in een tijdschrift
in
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
2017
RMNE calculation in forensic profiles with a high number of loci and allelic drop-outs using polynomial expansion
Sander Willems
Senne Cornelis
Yannick Gansemans
Bart Broeckx
Dieter De Coninck
Christophe Van Neste
Maarten Dhaenens
Dieter Deforce
Filip Van Nieuwerburgh
A1
Artikel in een tijdschrift
in
FORENSIC SCIENCE INTERNATIONAL-GENETICS
2017
The integrated use of omics technologies to understand mechanisms of Daphnia's stress response to cyanobacteria
Jana Asselman
Dieter De Coninck
Colin Janssen
Joseph Shaw
Karel De Schamphelaere
C3
Conferentie
2017
2016
Changes in DNA methylation in response to cyanobacteria in the model crustacean Daphnia
Jana Asselman
Dieter De Coninck
Colin Janssen
Karel De Schamphelaere
C3
Conferentie
2016
Changes in DNA methylation in response to cyanobacteria in the model crustacean Daphnia
Jana Asselman
Dieter De Coninck
Colin Janssen
Karel De Schamphelaere
C3
Conferentie
2016
Gene body methylation patterns in Daphnia are associated with gene family size
Jana Asselman
Dieter De Coninck
Michael E Pfrender
Karel De Schamphelaere
A1
Artikel in een tijdschrift
in
GENOME BIOLOGY AND EVOLUTION
2016
In vivo study of Dicer-2-mediated immune response of the small interfering RNA pathway upon systemic infections of virulent and avirulent viruses in Bombus terrestris
Jinzhi Niu
Guy Smagghe
Dieter De Coninck
Filip Van Nieuwerburgh
Dieter Deforce
Ivan Meeus
A1
Artikel in een tijdschrift
in
INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY
2016
Performance of a TthPrimPol-based whole genome amplification kit for copy number alteration detection using massively parallel sequencing
Lieselot Deleye
Dieter De Coninck
Annelies Dheedene
Petra De Sutter
Björn Menten
Dieter Deforce
Filip Van Nieuwerburgh
A1
Artikel in een tijdschrift
in
SCIENTIFIC REPORTS
2016
Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts
Sonia Heras García
Dieter De Coninck
Mario Van Poucke
Karen Goossens
Osvaldo Américo Bogado Pascottini
Filip Van Nieuwerburgh
Dieter Deforce
Petra De Sutter
Jo Leroy
Alfonso Gutierrez-Adan
et al.
A1
Artikel in een tijdschrift
in
BMC GENOMICS
2016
The equine embryo influences immune related gene expression in the oviduct
Katrien Smits
Dieter De Coninck
Filip Van Nieuwerburgh
Jan Govaere
Mario Van Poucke
Luc Peelman
Dieter Deforce
Ann Van Soom
A1
Artikel in een tijdschrift
in
BIOLOGY OF REPRODUCTION
2016
Uncovering the novel role of mTORC2 subunit of the PI3K/AKT/mTORC pathway in establishing naive pluripotency in human embryonic stem cells
Sharat Warrier
Margot Van der Jeught
Galbha Duggal
Jasin Taelman
Sylvie Lierman
Susana Marina Chuva de Sousa Lopes
Ann Van Soom
Luc Peelman
Filip Van Nieuwerburgh
Dieter De Coninck
et al.
C3
Conferentie
2016
2015
Characterization of the bacterial community naturally present on commercially grown basil leaves : evaluation of sample preparation prior to culture-independent techniques
Siele Ceuppens
Stefanie Delbeke
Dieter De Coninck
Jolien Boussemaere
Nico Boon
Mieke Uyttendaele
A1
Artikel in een tijdschrift
in
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH
2015
Comparative analysis of different culture conditions inducing naive pluripotency in human embryonic stem cells
Sharat Warrier
Galbha Duggal
Jasin Taelman
Sylvie Lierman
S Chuva de Sousa Lopes
Ann Van Soom
Luc Peelman
Filip Van Nieuwerburgh
Dieter De Coninck
Björn Menten
et al.
C3
Conferentie
2015
Conserved transcriptional responses to cyanobacterial stressors are mediated by alternate regulation, of paralogous genes in Daphnia
Jana Asselman
Michael E Pfrender
Jacqueline A Lopez
Dieter De Coninck
Colin Janssen
Joseph R Shaw
Karel De Schamphelaere
A1
Artikel in een tijdschrift
in
MOLECULAR ECOLOGY
2015
Forensic massively parallel sequencing data analysis tool: implementation of MyFLq as a standalone web- and Illumina BaseSpace®-application
Christophe Van Neste
Yannick Gansemans
Dieter De Coninck
David Van Hoofstat
Wim Van Criekinge
Dieter Deforce
Filip Van Nieuwerburgh
A1
Artikel in een tijdschrift
in
FORENSIC SCIENCE INTERNATIONAL-GENETICS
2015
Global cytosine methylation in Daphnia magna depends on genotype, environment and their interaction
Jana Asselman
Dieter De Coninck
Michiel Vandegehuchte
Mieke Jansen
Ellen Decaestecker
Luc De Meester
Julie Vanden Bussche
Lynn Vanhaecke
Colin Janssen
Karel De Schamphelaere
A1
Artikel in een tijdschrift
in
ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY
2015
Phospho-iTRAQ : assessing isobaric labels for the large-scale study of phosphopeptide stoichiometry
Pieter Glibert
Paulien Meert
Katleen Van Steendam
Filip Van Nieuwerburgh
Dieter De Coninck
Lennart Martens
Maarten Dhaenens
Dieter Deforce
A1
Artikel in een tijdschrift
in
JOURNAL OF PROTEOME RESEARCH
2015
Shallow whole genome sequencing is well suited for the detection of chromosomal aberrations in human blastocysts
Lieselot Deleye
Annelies Dheedene
Dieter De Coninck
Tom Sante
CHRISTODOULOS CHRISTODOULOU
Björn Heindryckx
Etienne Van den Abbeel
Petra De Sutter
Dieter Deforce
Björn Menten
et al.
A1
Artikel in een tijdschrift
in
FERTILITY AND STERILITY
2015
Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method
Lieselot Deleye
Dieter De Coninck
CHRISTODOULOS CHRISTODOULOU
Tom Sante
Annelies Dheedene
Björn Heindryckx
Etienne Van den Abbeel
Petra De Sutter
Björn Menten
Dieter Deforce
et al.
A1
Artikel in een tijdschrift
in
SCIENTIFIC REPORTS
2015
2014
An approach to assess the regulatory relevance of microevolutionary effects in ecological risk assessment of chemicals: a case-study with cadmium
Dieter De Coninck
Colin Janssen
Karel De Schamphelaere
A1
Artikel in een tijdschrift
in
ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY
2014
Changes in DNA methylation patterns in response to environmental stress in different genotypes of Daphnia
Jana Asselman
Dieter De Coninck
Michiel Vandegehuchte
Karel De Schamphelaere
Colin Janssen
C3
Conferentie
2014
Genome-wide transcription profiles reveal genotype-dependent responses of biological pathways and gene-families in Daphnia exposed to single and mixed stressors
Dieter De Coninck
Jana Asselman
Stephen Glaholt
Colin Janssen
John K Colbourne
JosephR Shaw
Karel De Schamphelaere
A1
Artikel in een tijdschrift
in
ENVIRONMENTAL SCIENCE & TECHNOLOGY
2014
2013
An investigation of the inter-clonal variation of the interactive effects of cadmium and Microcystis aeruginosa on the reproductive performance of Daphnia magna
Dieter De Coninck
Colin Janssen
Karel De Schamphelaere
A1
Artikel in een tijdschrift
in
AQUATIC TOXICOLOGY
2013
Are metal adapted Daphnia pulex populations better armed against future climate change stressors than non-adapted populations?
Dieter De Coninck
Jana Asselman
Stephen Glaholt
Colin Janssen
Joseph Shaw
Karel De Schamphelaere
C3
Conferentie
2013
Consequences of present and historic cadmium pollution for the response of Daphnia sp. to cyanobacterial stress: an ecological genomics perspective
Dieter De Coninck
Colin Janssen
Karel De Schamphelaere
Proefschrift
2013
Interactive effects of a bacterial parasite and the insecticide carbaryl to life-history and physiology of two Daphnia magna clones differing in carbaryl sensitivity
Dieter De Coninck
Karel De Schamphelaere
Mieke Jansen
Luc De Meester
Colin Janssen
A1
Artikel in een tijdschrift
in
AQUATIC TOXICOLOGY
2013
What genomic mechanisms cause a cadmium-adapted Daphnia pulex isolate to be more tolerant to cyanobacterial stress than a non-adapted isolate?
Dieter De Coninck
Jana Asselman
Stephen Glaholt
John Colbourne
Colin Janssen
Joseph Shaw
Karel De Schamphelaere
C3
Conferentie
2013
2012
Consequences of metal adaptation on sensitivity to future climate change stressors in Daphnia pulex populations
Jana Asselman
Dieter De Coninck
Megan Fisher
Stephen Glaholt
Colin Janssen
Joseph Shaw
Karel De Schamphelaere
C3
Conferentie
2012
Genomic mechanisms of co-tolerance of cadmium-adapted Daphnia pulex populations to cyanobacterial stress
Dieter De Coninck
Jana Asselman
Stephen Glaholt
John Colbourne
Colin Janssen
Joseph Shaw
Karel De Schamphelaere
C3
Conferentie
2012
Global DNA methylation in Daphnia magna is influenced by genotype and a wide variety of environmental stressors
Jana Asselman
Michiel Vandegehuchte
Karel De Schamphelaere
Dieter De Coninck
Mieke Jansen
Ivana Trenti
Ellen Decaestecker
Colin Janssen
C3
Conferentie
2012
Identification of pathways, gene networks, and paralogous gene families in Daphnia pulex responding to exposure to the toxic cyanobacterium Microcystis aeruginosa
Jana Asselman
Dieter De Coninck
Stephen Glaholt
John K Colbourne
Colin Janssen
Joseph R Shaw
Karel De Schamphelaere
A1
Artikel in een tijdschrift
in
ENVIRONMENTAL SCIENCE & TECHNOLOGY
2012
2011
Comparison of the transcriptomic response of a Cd-sensitive and a Cd-tolerant Daphnia pulex isolate to cyanobacterial stress
Jana Asselman
Dieter De Coninck
Stephen Glaholt
John Colbourne
Colin Janssen
Joseph Shaw
Karel De Schamphelaere
C3
Conferentie
2011
Using the model organism Daphnia pulex to delineate molecular pathways responding to environmental stress
Karel De Schamphelaere
Jana Asselman
Dieter De Coninck
Stephen Ghaholt
Colin Janssen
John Colbourne
Joseph Shaw
C3
Conferentie
2011
Will genetic adaptation of natural populations to chemical pollution result in lower or higher tolerance to future climate change?
Karel De Schamphelaere
Stephen Glaholt
Jana Asselman
Marlies Messiaen
Dieter De Coninck
Colin Janssen
John K Colbourne
Joseph R Shaw
A2
Artikel in een tijdschrift
in
INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT
2011
2010
Can metal stress induce transferable changes in gene transcription in Daphnia magna?
Michiel Vandegehuchte
Tine Vandenbrouck
Dieter De Coninck
Wim De Coen
Colin Janssen
A1
Artikel in een tijdschrift
in
AQUATIC TOXICOLOGY
2010
Gene transcription and higher-level effects of multigenerational Zn exposure in Daphnia magna
Michiel Vandegehuchte
Tine Vandenbrouck
Dieter De Coninck
Wim De Coen
Colin Janssen
A1
Artikel in een tijdschrift
in
CHEMOSPHERE
2010
Gene transcription profiles, global DNA methylation and potential transgenerational epigenetic effects related to Zn exposure history in Daphnia magna
Michiel Vandegehuchte
Dieter De Coninck
Tine Vandenbrouck
Wim De Coen
Colin Janssen
A1
Artikel in een tijdschrift
in
ENVIRONMENTAL POLLUTION
2010