Research Explorer

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Researcher

Dieter De Coninck

Awards & Distinctions

41 Results

2018

Massively parallel sequencing of micro-manipulated cells targeting a comprehensive panel of disease-causing genes : a comparative evaluation of upstream whole-genome amplification methods

Lieselot DeleyeYannick GansemansDieter De ConinckFilip Van NieuwerburghDieter Deforce

A1 Journal Article in PLOS ONE

2017

Bisulfite sequencing with Daphnia highlights a role for epigenetics in regulating stress response to Microcystis through preferential differential methylation of serine and threonine amino acids

Jana AsselmanDieter De ConinckEline BeertColin JanssenLuisa OrsiniMichael E PfrenderEllen DecaesteckerKarel De Schamphelaere

A1 Journal Article in ENVIRONMENTAL SCIENCE & TECHNOLOGY

Direct comparison of distinct naive pluripotent states in human embryonic stem cells

Sharat WarrierMargot Van der JeughtGalbha DuggalLaurentijn TillemanElla SutherlandJasin TaelmanMina PopovicSylvie LiermanSusana Marina Chuva de Sousa LopesAnn Van Soom et al.

A1 Journal Article in NATURE COMMUNICATIONS

Infections of virulent and avirulent viruses differentially influenced the expression of dicer-1, ago-1, and microRNAs in Bombus terrestris

Jinzhi NiuIvan MeeusDieter De ConinckDieter DeforceKayvan EtebariSassan AsgariGuy Smagghe

A1 Journal Article in SCIENTIFIC REPORTS

Microbial community profiling of fresh basil and pitfalls in taxonomic assignment of enterobacterial pathogenic species based upon 16S rRNA

Siele CeuppensDieter De ConinckNadine BottledoornFilip Van NieuwerburghMieke Uyttendaele

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

RMNE calculation in forensic profiles with a high number of loci and allelic drop-outs using polynomial expansion

Sander WillemsSenne CornelisYannick GansemansBart BroeckxDieter De ConinckChristophe Van NesteMaarten DhaenensDieter DeforceFilip Van Nieuwerburgh

A1 Journal Article in FORENSIC SCIENCE INTERNATIONAL-GENETICS

The integrated use of omics technologies to understand mechanisms of Daphnia's stress response to cyanobacteria

Jana AsselmanDieter De ConinckColin JanssenJoseph ShawKarel De Schamphelaere

2016

Changes in DNA methylation in response to cyanobacteria in the model crustacean Daphnia

Jana AsselmanDieter De ConinckColin JanssenKarel De Schamphelaere

Changes in DNA methylation in response to cyanobacteria in the model crustacean Daphnia

Jana AsselmanDieter De ConinckColin JanssenKarel De Schamphelaere

Gene body methylation patterns in Daphnia are associated with gene family size

Jana AsselmanDieter De ConinckMichael E PfrenderKarel De Schamphelaere

A1 Journal Article in GENOME BIOLOGY AND EVOLUTION

In vivo study of Dicer-2-mediated immune response of the small interfering RNA pathway upon systemic infections of virulent and avirulent viruses in Bombus terrestris

Jinzhi NiuGuy SmaggheDieter De ConinckFilip Van NieuwerburghDieter DeforceIvan Meeus

A1 Journal Article in INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Performance of a TthPrimPol-based whole genome amplification kit for copy number alteration detection using massively parallel sequencing

Lieselot DeleyeDieter De ConinckAnnelies DheedenePetra De SutterBjörn MentenDieter DeforceFilip Van Nieuwerburgh

A1 Journal Article in SCIENTIFIC REPORTS

Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts

Sonia Heras GarciaDieter De ConinckMario Van PouckeKaren GoossensOsvaldo Américo Bogado PascottiniFilip Van NieuwerburghDieter DeforcePetra De SutterJo LeroyAlfonso Gutierrez-Adan et al.

A1 Journal Article in BMC GENOMICS

The equine embryo influences immune related gene expression in the oviduct

Katrien SmitsDieter De ConinckFilip Van NieuwerburghJan GovaereMario Van PouckeLuc PeelmanDieter DeforceAnn Van Soom

A1 Journal Article in BIOLOGY OF REPRODUCTION

Uncovering the novel role of mTORC2 subunit of the PI3K/AKT/mTORC pathway in establishing naive pluripotency in human embryonic stem cells

Sharat WarrierMargot Van der JeughtGalbha DuggalJasin TaelmanSylvie LiermanSusana Marina Chuva de Sousa LopesAnn Van SoomLuc PeelmanFilip Van NieuwerburghDieter De Coninck et al.

2015

Characterization of the bacterial community naturally present on commercially grown basil leaves : evaluation of sample preparation prior to culture-independent techniques

Siele CeuppensStefanie DelbekeDieter De ConinckJolien BoussemaereNico BoonMieke Uyttendaele

A1 Journal Article in INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH

Comparative analysis of different culture conditions inducing naive pluripotency in human embryonic stem cells

Sharat WarrierGalbha DuggalJasin TaelmanSylvie LiermanS Chuva de Sousa LopesAnn Van SoomLuc PeelmanFilip Van NieuwerburghDieter De ConinckBjörn Menten et al.

Conserved transcriptional responses to cyanobacterial stressors are mediated by alternate regulation, of paralogous genes in Daphnia

Jana AsselmanMichael E PfrenderJacqueline A LopezDieter De ConinckColin JanssenJoseph R ShawKarel De Schamphelaere

A1 Journal Article in MOLECULAR ECOLOGY

Forensic massively parallel sequencing data analysis tool: implementation of MyFLq as a standalone web- and Illumina BaseSpace®-application

Christophe Van NesteYannick GansemansDieter De ConinckDavid Van HoofstatWim Van CriekingeDieter DeforceFilip Van Nieuwerburgh

A1 Journal Article in FORENSIC SCIENCE INTERNATIONAL-GENETICS

Global cytosine methylation in Daphnia magna depends on genotype, environment and their interaction

Jana AsselmanDieter De ConinckMichiel VandegehuchteMieke JansenEllen DecaesteckerLuc De MeesterJulie Vanden BusscheLynn VanhaeckeColin JanssenKarel De Schamphelaere

A1 Journal Article in ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Phospho-iTRAQ : assessing isobaric labels for the large-scale study of phosphopeptide stoichiometry

Pieter GlibertPaulien MeertKatleen Van SteendamFilip Van NieuwerburghDieter De ConinckLennart MartensMaarten DhaenensDieter Deforce

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Shallow whole genome sequencing is well suited for the detection of chromosomal aberrations in human blastocysts

Lieselot DeleyeAnnelies DheedeneDieter De ConinckTom SanteCHRISTODOULOS CHRISTODOULOUBjörn HeindryckxEtienne Van den AbbeelPetra De SutterDieter DeforceBjörn Menten et al.

A1 Journal Article in FERTILITY AND STERILITY

Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method

Lieselot DeleyeDieter De ConinckCHRISTODOULOS CHRISTODOULOUTom SanteAnnelies DheedeneBjörn HeindryckxEtienne Van den AbbeelPetra De SutterBjörn MentenDieter Deforce et al.

A1 Journal Article in SCIENTIFIC REPORTS

2014

An approach to assess the regulatory relevance of microevolutionary effects in ecological risk assessment of chemicals: a case-study with cadmium

Dieter De ConinckColin JanssenKarel De Schamphelaere

A1 Journal Article in ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Changes in DNA methylation patterns in response to environmental stress in different genotypes of Daphnia

Jana AsselmanDieter De ConinckMichiel VandegehuchteKarel De SchamphelaereColin Janssen

Genome-wide transcription profiles reveal genotype-dependent responses of biological pathways and gene-families in Daphnia exposed to single and mixed stressors

Dieter De ConinckJana AsselmanStephen GlaholtColin JanssenJohn K ColbourneJosephR ShawKarel De Schamphelaere

A1 Journal Article in ENVIRONMENTAL SCIENCE & TECHNOLOGY

2013

An investigation of the inter-clonal variation of the interactive effects of cadmium and Microcystis aeruginosa on the reproductive performance of Daphnia magna

Dieter De ConinckColin JanssenKarel De Schamphelaere

A1 Journal Article in AQUATIC TOXICOLOGY

Are metal adapted Daphnia pulex populations better armed against future climate change stressors than non-adapted populations?

Dieter De ConinckJana AsselmanStephen GlaholtColin JanssenJoseph ShawKarel De Schamphelaere

Consequences of present and historic cadmium pollution for the response of Daphnia sp. to cyanobacterial stress: an ecological genomics perspective

Dieter De ConinckColin JanssenKarel De Schamphelaere

Interactive effects of a bacterial parasite and the insecticide carbaryl to life-history and physiology of two Daphnia magna clones differing in carbaryl sensitivity

Dieter De ConinckKarel De SchamphelaereMieke JansenLuc De MeesterColin Janssen

A1 Journal Article in AQUATIC TOXICOLOGY

What genomic mechanisms cause a cadmium-adapted Daphnia pulex isolate to be more tolerant to cyanobacterial stress than a non-adapted isolate?

Dieter De ConinckJana AsselmanStephen GlaholtJohn ColbourneColin JanssenJoseph ShawKarel De Schamphelaere

2012

Consequences of metal adaptation on sensitivity to future climate change stressors in Daphnia pulex populations

Jana AsselmanDieter De ConinckMegan FisherStephen GlaholtColin JanssenJoseph ShawKarel De Schamphelaere

Genomic mechanisms of co-tolerance of cadmium-adapted Daphnia pulex populations to cyanobacterial stress

Dieter De ConinckJana AsselmanStephen GlaholtJohn ColbourneColin JanssenJoseph ShawKarel De Schamphelaere

Global DNA methylation in Daphnia magna is influenced by genotype and a wide variety of environmental stressors

Jana AsselmanMichiel VandegehuchteKarel De SchamphelaereDieter De ConinckMieke JansenIvana TrentiEllen DecaesteckerColin Janssen

Identification of pathways, gene networks, and paralogous gene families in Daphnia pulex responding to exposure to the toxic cyanobacterium Microcystis aeruginosa

Jana AsselmanDieter De ConinckStephen GlaholtJohn K ColbourneColin JanssenJoseph R ShawKarel De Schamphelaere

A1 Journal Article in ENVIRONMENTAL SCIENCE & TECHNOLOGY

2011

Comparison of the transcriptomic response of a Cd-sensitive and a Cd-tolerant Daphnia pulex isolate to cyanobacterial stress

Jana AsselmanDieter De ConinckStephen GlaholtJohn ColbourneColin JanssenJoseph ShawKarel De Schamphelaere

Using the model organism Daphnia pulex to delineate molecular pathways responding to environmental stress

Karel De SchamphelaereJana AsselmanDieter De ConinckStephen GhaholtColin JanssenJohn ColbourneJoseph Shaw

Will genetic adaptation of natural populations to chemical pollution result in lower or higher tolerance to future climate change?

Karel De SchamphelaereStephen GlaholtJana AsselmanMarlies MessiaenDieter De ConinckColin JanssenJohn K ColbourneJoseph R Shaw

A2 Journal Article in INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT

2010

Can metal stress induce transferable changes in gene transcription in Daphnia magna?

Michiel VandegehuchteTine VandenbrouckDieter De ConinckWim De CoenColin Janssen

A1 Journal Article in AQUATIC TOXICOLOGY

Gene transcription and higher-level effects of multigenerational Zn exposure in Daphnia magna

Michiel VandegehuchteTine VandenbrouckDieter De ConinckWim De CoenColin Janssen

A1 Journal Article in CHEMOSPHERE

Gene transcription profiles, global DNA methylation and potential transgenerational epigenetic effects related to Zn exposure history in Daphnia magna

Michiel VandegehuchteDieter De ConinckTine VandenbrouckWim De CoenColin Janssen

A1 Journal Article in ENVIRONMENTAL POLLUTION