Project

A paradigm shift in our understanding of the modular complexity of phage lysins for improved antibacterials

Code
1226526N
Duration
01 October 2025 → 30 September 2028
Funding
Research Foundation - Flanders (FWO)
Promotor
Research disciplines
  • Natural sciences
    • Bioinformatics and computational biology not elsewhere classified
    • Virology
  • Medical and health sciences
    • Microbiology not elsewhere classified
  • Engineering and technology
    • Medical molecular engineering of nucleic acids and proteins
Keywords
computational protein design antibacterial phage lysin
 
Project description
Lysins are phage-encoded enzymes that degrade the peptidoglycan layer of bacterial cell walls. They hold promise as alternatives to antibiotics, particularly in combating rising antimicrobial resistance. However, lysin research remains largely empirical, relying on resource-intensive screenings with limited generalizability. This highlights the need for fundamental studies to address unresolved questions about lysin structure, function and regulation. In this project, I will study regulatory mechanisms and interactions between specific lysin modules in their natural phage context in view of their impact on phage fitness, with a particular focus on the lysis step. Therefore, I will make use of recent technological advances to efficiently edit phage genomes to study the function of genes and their structure-function relationships. These insights will result in a paradigm shift towards a more refined understanding of the modularity of phage lysins than our current simplistic view. Ultimately, my research will drive the development of improved next-generation antimicrobial lysins with decoupled regulatory and lytic functions, offering a rationalized and de-risked approach to lysin R&D pipelines.