Research Explorer

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Project

The first genome-wide maps of the micropeptidome validated through large-scale reprocessing of public proteomics data

Outputs and Outcomes

Publications

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

Marieke VrommanJasper AnckaertStefania BortoluzziAlessia BuratinChia-Ying ChenQinjie ChuTrees-Juen ChuangRoozbeh DehghannasiriChristoph DieterichXin DongPaul FlicekEnrico GaffoWanjun GuChunjiang HeSteve HoffmannOsagie IzuoguMichael S. JacksonTobias JakobiEric C. LaiJustine NuytensJulia SalzmanMauro Santibanez-KorefPeter StadlerOlivier ThasEveline Vanden EyndeKimberly VerniersGuoxia WenJakub WestholmLi YangChu-Yu YeNurten YigitGuo-Hua YuanJinyang ZhangFangqing ZhaoJo VandesompelePieter-Jan Volders et al.

A1 Journal Article in NATURE METHODS

Sensitive and specific spectral library searching with CompOmics Spectral library Searching tool and Percolator

Genet Abay ShiferawRalf GabrielsRobbin BouwmeesterTim Van Den BosscheElien VandermarliereLennart MartensPieter-Jan Volders

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

CIRCprimerXL : convenient and high-throughput PCR primer design for circular RNA quantification

Marieke VrommanJasper AnckaertJo VandesompelePieter-Jan Volders

A2 Journal Article in FRONTIERS IN BIOINFORMATICS

MEIS2 is an adrenergic core regulatory transcription factor involved in early initiation of TH-MYCN-driven neuroblastoma formation

Jolien De WynMark W. ZimmermanNina Weichert-LeaheyCarolina de Carvalho NunesBelamy B. CheungBrian J. AbrahamAnneleen BeckersPieter-Jan VoldersBieke DecaestekerDaniel R. CarterAlfred Thomas LookKatleen De PreterWouter Van LoockeGlenn M. MarshallAdam D. DurbinFranki SpelemanKaat Durinck et al.

A1 Journal Article in CANCERS

Validation of circular RNAs using RT‐qPCR after effective removal of linear RNAs by ribonuclease R

Marieke VrommanNurten YigitKimberly VerniersSteve LefeverJo VandesompelePieter-Jan Volders

A2 Journal Article in CURRENT PROTOCOLS