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Onderzoeker
Vanessa Vermeirssen
Profiel
Projecten
Publicaties & datasets
Activiteiten
Prijzen & Erkenningen
Octrooien
55
Resultaten
2025
A human-specific, concerted repression of microcephaly genes contributes to radiation-induced growth defects in cortical organoids
Jessica Honorato Ribeiro
Emre Etlioglu
Jasmine Buset
Ann Janssen
Hanne Puype
Lisa Berden
Andre Claude Mbouombouo Mfossa
Winnok H. De Vos
Vanessa Vermeirssen
Sarah Baatout
et al.
A1
Artikel in een tijdschrift
in
ISCIENCE
2025
Methodological analysis of network inference and multi-omics data integration to unravel eukaryotic gene regulation
Jens Uwe Loers
Vanessa Vermeirssen
Proefschrift
2025
Repurposing itraconazole and pyrimethamine with temozolomide as a combinatorial treatment for glioblastoma
Thibault Lootens
Jelle Vandersteene
Harry Pinson
Sam Ernst
Tom Boterberg
Vanessa Vermeirssen
Olivier De Wever
Frederik De Smet
Robrecht Raedt
C3
Conferentie
2025
2024
A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data
Jens Uwe Loers
Vanessa Vermeirssen
A1
Artikel in een tijdschrift
in
BRIEFINGS IN BIOINFORMATICS
2024
Evaluation of single-sample network inference methods for precision oncology
Joke Deschildre
Boris Vandemoortele
Jens Uwe Loers
Katleen De Preter
Vanessa Vermeirssen
A1
Artikel in een tijdschrift
in
NPJ SYSTEMS BIOLOGY AND APPLICATIONS
2024
HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening
Carolina de Carvalho Nunes
Jasper Anckaert
Fanny De Vloed
Jolien De Wyn
Kaat Durinck
Jo Vandesompele
Franki Speleman
Vanessa Vermeirssen
A1
Artikel in een tijdschrift
in
PLOS ONE
2024
Human iPSC modeling recapitulates in vivo sympathoadrenal development and reveals an aberrant developmental subpopulation in familial neuroblastoma
Stéphane Van Haver
Yujie Fan
Sarah-Lee Bekaert
Celine Everaert
Wouter Van Loocke
Vittorio Zanzani
Joke Deschildre
Ines Fernandez Maestre
Adrianna Amaro
Vanessa Vermeirssen
et al.
A1
Artikel in een tijdschrift
in
ISCIENCE
2024
NBAtlas : a harmonized single-cell transcriptomic reference atlas of human neuroblastoma tumors
Noah Bonine
Vittorio Zanzani
Annelies Van Hemelryk
Bavo Vanneste
Christian Zwicker
Tinne Thoné
Sofie Roelandt
Sarah-Lee Bekaert
Jan Koster
Isabelle Janoueix-Lerosey
et al.
A1
Artikel in een tijdschrift
in
CELL REPORTS
2024
Proteomics dataset of lysolecithin-induced demyelinated lesions in corpus callosum of Lewis rats, treated with Vagus nerve stimulation or sham treatment
Helen Bachmann
Boris Vandemoortele
Vanessa Vermeirssen
Evelien Carrette
Kristl Vonck
Paul Boon
Robrecht Raedt
Guy Laureys
A2
Artikel in een tijdschrift
in
DATA IN BRIEF
2024
Repurposing itraconazole and pyrimethamine with temozolomide as a combinatorial treatment for glioblastoma
Thibault Lootens
Jelle Vandersteene
Harry Pinson
Tom Boterberg
Vanessa Vermeirssen
Olivier De Wever
Frederik De Smet
Robrecht Raedt
C3
Conferentie
2024
Vagus nerve stimulation enhances remyelination and decreases innate neuroinflammation in lysolecithin-induced demyelination
Helen Bachmann
Boris Vandemoortele
Vanessa Vermeirssen
Evelien Carrette
Kristl Vonck
Paul Boon
Robrecht Raedt
Guy Laureys
A1
Artikel in een tijdschrift
in
BRAIN STIMULATION
2024
2023
A harmonized single-cell transcriptomic atlas of human neuroblastoma
Noah Bonine
Vittorio Zanzani
Liselot Mus
Bavo Vanneste
Christian Zwicker
Tinne Thoné
Sofie Roelandt
Cécile Thirant
Amira Kramdi
Isabelle Janoueix-Lerosey
et al.
C3
Conferentie
2023
Molecular systems biology approaches to investigate mechanisms of gut-brain communication in neurological diseases
Boris Vandemoortele
Vanessa Vermeirssen
A1
Artikel in een tijdschrift
in
EUROPEAN JOURNAL OF NEUROLOGY
2023
Preclinical evaluation of targeted therapeutic strategies for high-risk neuroblastoma
Carolina de Carvalho Nunes
Franki Speleman
Kaat Durinck
Vanessa Vermeirssen
Proefschrift
2023
Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA
Vanessa Vermeirssen
Jill Deleu
Annelien Morlion
Celine Everaert
Jilke De Wilde
Jasper Anckaert
Kaat Durinck
Justine Nuytens
Muhammad Rishfi
Franki Speleman
et al.
C3
Conferentie
2023
2022
Exploration of neuroblastoma xenograft models for tumor extracellular RNA profiling in murine blood plasma
Vanessa Vermeirssen
Jill Deleu
Annelien Morlion
Celine Everaert
Jilke De Wilde
Jasper Anckaert
Kaat Durinck
Justine Nuytens
Muhammad Rishfi
Franki Speleman
et al.
Dataset
2022
HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening
Carolina de Carvalho Nunes
Jasper Anckaert
Fanny De Vloed
Jolien De Wyn
Kaat Durinck
Jo Vandesompele
Franki Speleman
Vanessa Vermeirssen
Preprint
2022
Maximal acyclic subgraph optimization for gene regulatory networks
Kenneth Stoop
Tom Michoel
Vanessa Vermeirssen
Mario Pickavet
P. Audenaert
Didier Colle
C3
Conferentie
2022
Nearby transposable elements impact plant stress gene regulatory networks : a meta-analysis in A. thaliana and S. lycopersicum
Jan Deneweth
Yves Van de Peer
Vanessa Vermeirssen
A1
Artikel in een tijdschrift
in
BMC GENOMICS
2022
Opportunities and challenges in interpretable deep learning for drug sensitivity prediction of cancer cells
Bikash Ranjan Samal
Jens Uwe Loers
Vanessa Vermeirssen
Katleen De Preter
A2
Artikel in een tijdschrift
in
FRONTIERS IN BIOINFORMATICS
2022
RRM2 enhances MYCN driven neuroblastoma formation and acts as a synergistic target with CHK1 inhibition
Lisa Depestel
Carolina de Carvalho Nunes
Liselot Mus
Iris Nelen
Louis Delhaye
Kaylee Keller
Volodimir Olexiouk
Fanny De Vloed
Ellen Sanders
Aline Eggermont
et al.
C3
Conferentie
2022
RRM2 enhances MYCN-driven neuroblastoma formation and acts as a synergistic target with CHK1 inhibition
Carolina de Carvalho Nunes
Lisa Depestel
Liselot Mus
Kaylee M. Keller
Louis Delhaye
Amber Louwagie
Muhammad Rishfi
Alex Whale
Neesha Kara
Simon R. Andrews
et al.
A1
Artikel in een tijdschrift
in
SCIENCE ADVANCES
2022
SUBATOMIC : a SUbgraph BAsed mulTi-OMIcs clustering framework to analyze integrated multi-edge networks
Jens Uwe Loers
Vanessa Vermeirssen
A1
Artikel in een tijdschrift
in
BMC BIOINFORMATICS
2022
Whole transcriptome profiling of liquid biopsies from tumor xenografted mouse models enables specific monitoring of tumor-derived RNA
Vanessa Vermeirssen
Jill Deleu
Annelien Morlion
Celine Everaert
Kimberly Verniers
Tom Van Maerken
Bram De Wilde
Jo Vandesompele
Anneleen Decock
C3
Conferentie
2022
Whole transcriptome profiling of liquid biopsies from tumor xenografted mouse models enables specific monitoring of tumor-derived RNA
Vanessa Vermeirssen
Jill Deleu
Annelien Morlion
Celine Everaert
Kimberly Verniers
Tom Van Maerken
Bram De Wilde
Jo Vandesompele
Anneleen Decock
C3
Conferentie
2022
Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA
Vanessa Vermeirssen
Jill Deleu
Annelien Morlion
Celine Everaert
Jilke De Wilde
Jasper Anckaert
Kaat Durinck
Justine Nuytens
Muhammad Rishfi
Franki Speleman
et al.
A2
Artikel in een tijdschrift
in
NAR CANCER
2022
Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA
Vanessa Vermeirssen
Jill Deleu
Annelien Morlion
Celine Everaert
Jilke De Wilde
Jasper Anckaert
Kaat Durinck
Justine Nuytens
Muhammad Rishfi
Franki Speleman
et al.
Dataset
2022
2021
From DNA copy number gains and tumor dependencies to novel therapeutic targets for high-risk neuroblastoma
Bieke Decaesteker
Kaat Durinck
Nadine Van Roy
Bram De Wilde
Christophe Van Neste
Stéphane Van Haver
Stephen Roberts
Katleen De Preter
Vanessa Vermeirssen
Franki Speleman
A1
Artikel in een tijdschrift
in
JOURNAL OF PERSONALIZED MEDICINE
2021
Whole transcriptome profiling of liquid biopsies from tumor xenografted mouse models enables specific monitoring of tumor-derived RNA
Vanessa Vermeirssen
Jill Deleu
Annelien Morlion
Celine Everaert
Kimberly Verniers
Tom Van Maerken
Bram De Wilde
Jo Vandesompele
Anneleen Decock
C3
Conferentie
2021
Whole transcriptome profiling of liquid biopsies from tumor xenografted mouse models enables specific monitoring of tumor-derived RNA
Vanessa Vermeirssen
Jill Deleu
Celine Everaert
Annelien Morlion
Kimberly Verniers
Jasper Anckaert
Jo Vandesompele
Tom Van Maerken
Anneleen Decock
Bram De Wilde
C3
Conferentie
2021
2020
Whole transcriptome profiling of liquid biopsies from tumor xenografted mouse models enables specific monitoring of tumor-derived RNA
Jill Deleu
Vanessa Vermeirssen
Celine Everaert
Annelien Morlion
Kimberly Verniers
Jasper Anckaert
Jo Vandesompele
Tom Van Maerken
Anneleen Decock
Bram De Wilde
C3
Conferentie
2020
2019
17q gain provides proliferative advantage to human embryonic stem cells under replicative stress
Liselot Mus
Stéphane Van Haver
Geertrui Denecker
Nadja Zeltner
Yudelca Ogando
Ellen Sanders
Eva Jacobs
Mina Popovic
Christophe Van Neste
Suzanne Vanhauwaert
et al.
C3
Conferentie
2019
Whole transcriptome profiling of liquid biopsies from patient-derived xenograft (PDX) models
Vanessa Vermeirssen
Anneleen Decock
Kimberly Verniers
Celine Everaert
Annelien Morlion
Jill Deleu
Tom Van Maerken
Bram De Wilde
Jo Vandesompele
C3
Conferentie
2019
2018
Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant
Jonas Defoort
Yves Van de Peer
Vanessa Vermeirssen
A1
Artikel in een tijdschrift
in
NUCLEIC ACIDS RESEARCH
2018
2014
Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress
Vanessa Vermeirssen
Inge De Clercq
Thomas Van Parys
Frank Van Breusegem
Yves Van de Peer
A1
Artikel in een tijdschrift
in
PLANT CELL
2014
Reciprocal responses in the interaction between Arabidopsis and the cell-content feeding chelicerate herbivore spider mite
Vladimir Zhurov
Marie Navarro
Kristie A Bruinsma
Vicent Arbona
M Estrella Santamaria
Marc Cazaux
Nicky Wybouw
Edward J Osborne
Cherise Ens
Cristina Rioja
et al.
A1
Artikel in een tijdschrift
in
PLANT PHYSIOLOGY
2014
2013
The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis
Inge De Clercq
Vanessa Vermeirssen
Olivier Van Aken
Klaas Vandepoele
Monika W Murcha
Simon R Law
Annelies Inzé
Sophia Ng
Aneta Ivanova
Debbie Rombaut
et al.
A1
Artikel in een tijdschrift
in
PLANT CELL
2013
2012
Identification of cis-regulatory elements specific for different types of reactive oxygen species in Arabidopsis thaliana
Veselin Petrov
Vanessa Vermeirssen
Inge De Clercq
Frank Van Breusegem
Ivan Minkov
Klaas Vandepoele
Tsanko S Gechev
A1
Artikel in een tijdschrift
in
GENE
2012
2010
Towards system level modeling of functional modules and regulatory pathways using genome-scale data
Tom Michoel
Anagha Madhusudan Joshi
Eric Bonnet
Vanessa Vermeirssen
Yves Van de Peer
C1
Conferentie
2010
2009
Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development
Vanessa Vermeirssen
Anagha Madhusudan Joshi
Tom Michoel
Eric Bonnet
Tine Casneuf
Yves Van de Peer
A1
Artikel in een tijdschrift
in
MOLECULAR BIOSYSTEMS
2009
2007
Matrix and Steiner-triple-system smart pooling assays for high-performance transcription regulatory network mapping
Vanessa Vermeirssen
Bart Deplancke
M Inmaculada Barrasa
John S Reece-Hoyes
H Efsun Arda
Christian A Grove
Natalia J Martinez
Reynaldo Sequerra
Lynn Doucette-Stamm
Michael R Brent
et al.
A1
Artikel in een tijdschrift
in
NATURE METHODS
2007
Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network
Vanessa Vermeirssen
M Inmaculada Barrasa
Cesar A Hidalgo
Jenny Aurielle B Babon
Reynaldo Sequerra
Lynn Doucette-Stamm
Albert-Laszlo Barabasi
Albertha JM Walhout
A1
Artikel in een tijdschrift
in
GENOME RESEARCH
2007
2006
Gateway-compatible yeast one-hybrid screens
Bart Deplancke
Vanessa Vermeirssen
Hatice Efsun Arda
Natalia J Martinez
Alberta J Walhout
A4
Artikel in een tijdschrift
in
COLD SPRING HARBOR PROTOCOLS
2006
2005
ACE inhibitor captopril reduces ecdysteroids and oviposition in moths
Lieselot Vercruysse
D Gelman
SANDRIEN VAN DE VELDE
Elke Raes
B Hooghe
Vanessa Vermeirssen
John Van Camp
Guy Smagghe
A1
Artikel in een tijdschrift
in
Annals of the New York Academy of Sciences
2005
Fractionation of angiotensin I converting enzyme inhibitory activity from pea and whey protein in vitro gastrointestinal digests
Vanessa Vermeirssen
John Van Camp
Willy Verstraete
A1
Artikel in een tijdschrift
in
JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE
2005
In vitro intestinal transport and antihypertensive activity of ACE inhibitory pea and whey digests
Vanessa Vermeirssen
Patrick Augustijns
Nicole Morel
John Van Camp
Anne Opsomer
Willy Verstraete
A1
Artikel in een tijdschrift
in
INTERNATIONAL JOURNAL OF FOOD SCIENCES AND NUTRITION
2005
2004
A quantitative in silico analysis calculates the angiotensin I converting enzyme (ACE) inhibitory activity in pea and whey protein digests
Vanessa Vermeirssen
Arie van der Bent
John Van Camp
Aart van Amerongen
Willy Verstraete
A1
Artikel in een tijdschrift
in
BIOCHIMIE
2004
Influence of the lactokinin Ala-Leu-Pro-Met-His-Ile-Arg (ALPMHIR) on the release of endothelin-1 by endothelial cells
Wim Maes
John Van Camp
Vanessa Vermeirssen
Mattias Hemeryck
Jean Marie Ketelslegers
Jürgen Schrezenmeir
Patric Van Oostveldt
André Huyghebaert
A1
Artikel in een tijdschrift
in
REGULATORY PEPTIDES
2004
The angiotensin converting enzyme inhibitor captopril reduces oviposition and ecdysteroid levels in Lepidoptera
Lieselot Vercruysse
D Gelman
Elke Raes
B Hooghe
Vanessa Vermeirssen
John Van Camp
Guy Smagghe
A1
Artikel in een tijdschrift
in
ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY
2004
2003
Release and activity of ACE inhibitory peptides from pea and whey protein
Vanessa Vermeirssen
John Van Camp
Willy Verstraete
Proefschrift
2003
Release of angiotensin I converting enzyme (ACE) inhibitory activity during in vitro gastrointestinal digestion: from batch experiment to semicontinuous model
Vanessa Vermeirssen
John Van Camp
Liesbeth Devos
Willy Verstraete
A1
Artikel in een tijdschrift
in
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
2003
The impact of fermentation and in vitro digestion on the formation of angiotensin-I-converting enzyme inhibitory activity from pea and whey protein
Vanessa Vermeirssen
John Van Camp
Karel Decroos
L Van Wijmelbeke
Willy Verstraete
A1
Artikel in een tijdschrift
in
JOURNAL OF DAIRY SCIENCE
2003
2002
Intestinal transport of the lactokinin Ala-Leu-Pro-Met-His-Ile-Arg through a Caco-2 Bbe monolayer
Vanessa Vermeirssen
B Deplancke
KA Tappenden
John Van Camp
HR Gaskins
Willy Verstraete
A1
Artikel in een tijdschrift
in
JOURNAL OF PEPTIDE SCIENCE
2002
Optimisation and validation of an angiotensin-converting enzyme inhibition assay for the screening of bioactive peptides
Vanessa Vermeirssen
John Van Camp
Willy Verstraete
A1
Artikel in een tijdschrift
in
JOURNAL OF BIOCHEMICAL AND BIOPHYSICAL METHODS
2002
2001
Development of a six-stage culture system for simulating the gastrointestinal microbiota of weaned infants
Patrick De Boever
Roel Wouters
Vanessa Vermeirssen
Nico Boon
Willy Verstraete
A2
Artikel in een tijdschrift
in
MICROBIAL ECOLOGY IN HEALTH AND DISEASE
2001