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Onderzoeker
Robrecht Cannoodt
Profiel
Projecten
Publicaties
Activiteiten
Prijzen & Erkenningen
42
Resultaten
2025
funkyheatmap : visualising data frames with mixed data types
Robrecht Cannoodt
Louise Deconinck
Artuur Couckuyt
Nikolay S. Markov*
Luke Zappia
Malte D. Luecken
Marta Interlandi
Yvan Saeys
Wouter Saelens
A2
Artikel in een tijdschrift
in
JOURNAL OF OPEN SOURCE SOFTWARE
2025
2023
Dual molecular effects of constitutional SF3B2 variants cause a novel dominant spliceosomopathy displaying retinitis pigmentosa or developmental skeletal anomalies
Stijn Van de Sompele
Caroline Van Cauwenbergh
Marjolein Carron
Alfredo Dueñas Rey
Frauke Coppieters
Toon Rosseel
Hong Tran
Robrecht Cannoodt
Thalia Van Laethem
Brecht Guillemyn
et al.
C3
Conferentie
2023
2022
CD8 memory precursor cell generation is a continuous process
Helena Todorov
Margaux Prieux
Daphne Laubreton
Matteo Bouvier
Shaoying Wang
Simon de Bernard
Christophe Arpin
Robrecht Cannoodt
Wouter Saelens
Arnaud Bonnaffoux
et al.
A1
Artikel in een tijdschrift
in
ISCIENCE
2022
2021
A sandbox for prediction and integration of DNA, RNA, and proteins in single cells
Malte D Luecken
Daniel Bernard Burkhardt
Robrecht Cannoodt
Christopher Lance
Aditi Agrawal
Hananeh Aliee
Ann T Chen
Louise Deconinck
Angela M Detweiler
Alejandro A Granados
et al.
C1
Conferentie
2021
Recent advances in trajectory inference from single-cell omics data
Louise Deconinck
Robrecht Cannoodt
Wouter Saelens
Bart Deplancke
Yvan Saeys
A2
Artikel in een tijdschrift
in
CURRENT OPINION IN SYSTEMS BIOLOGY
2021
Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells
Robrecht Cannoodt
Wouter Saelens
Louise Deconinck
Yvan Saeys
A1
Artikel in een tijdschrift
in
NATURE COMMUNICATIONS
2021
The RNA Atlas expands the catalog of human non-coding RNAs
Lucia Lorenzi
Hua-Sheng Chiu
Francisco Avila Cobos
Stephen Gross
Pieter-Jan Volders
Robrecht Cannoodt
Justine Nuytens
Katrien Vanderheyden
Jasper Anckaert
Steve Lefever
et al.
A1
Artikel in een tijdschrift
in
NATURE BIOTECHNOLOGY
2021
The RNA Atlas expands the catalog of human non-coding RNAs (June, 10.1038/s41587-021-00936-1, 2021)
Lucia Lorenzi
Hua-Sheng Chiu
Francisco Avila Cobos
Stephen Gross
Pieter-Jan Volders
Robrecht Cannoodt
Justine Nuytens
Katrien Vanderheyden
Jasper Anckaert
Steve Lefever
et al.
Correctie
2021
Viash : from scripts to pipelines
Robrecht Cannoodt
Hendrik Cannoodt
Eric Van de Kerckhove
Andy Boschmans
Dries De Maeyer
Toni Verbeiren
Preprint
2021
2020
A scalable SCENIC workflow for single-cell gene regulatory network analysis
Bram van de Sande
Christopher Flerin
Kristofer Davie
Maxime De Waegeneer
Gert Hulselmans
Sara Aibar
Ruth Seurinck
Wouter Saelens
Robrecht Cannoodt
Quentin Rouchon
et al.
A1
Artikel in een tijdschrift
in
NATURE PROTOCOLS
2020
The rockerverse : packages and applications for containerisation with R
Daniel Nüst
Dirk Eddelbuettel
Dom Bennett
Robrecht Cannoodt
Dav Clark
Gergely Daróczi
Mark Edmondson
Colin Fay
Ellis Hughes
Lars Kjeldgaard
et al.
A1
Artikel in een tijdschrift
in
R JOURNAL
2020
TinGa : fast and flexible trajectory inference with Growing Neural Gas
Helena Todorov
Robrecht Cannoodt
Wouter Saelens
Yvan Saeys
A1
Artikel in een tijdschrift
in
BIOINFORMATICS
2020
Trajectory-based differential expression analysis for single-cell sequencing data
Koen Van den Berge
Hector Roux de Bézieux
Kelly Street
Wouter Saelens
Robrecht Cannoodt
Yvan Saeys
Sandrine Dudoit
Lieven Clement
A1
Artikel in een tijdschrift
in
NATURE COMMUNICATIONS
2020
2019
A comparison of single-cell trajectory inference methods
Wouter Saelens
Robrecht Cannoodt
Helena Todorov
Yvan Saeys
A1
Artikel in een tijdschrift
in
NATURE BIOTECHNOLOGY
2019
Dynbenchmark : accuracy, scalability, robustness and usability of single-cell trajectory inference methods
Robrecht Cannoodt
Wouter Saelens
Helena Todorov
Yvan Saeys
C3
Conferentie
2019
Essential guidelines for computational method benchmarking
Lukas M Weber
Wouter Saelens
Robrecht Cannoodt
Charlotte Soneson
Alexander Hapfelmeier
Paul P Gardner
Anne-Laure Boulesteix
Yvan Saeys
Mark D Robinson
A1
Artikel in een tijdschrift
in
GENOME BIOLOGY
2019
Modelling single-cell dynamics with trajectories and gene regulatory networks
Robrecht Cannoodt
Yvan Saeys
Katleen De Preter
Proefschrift
2019
Network inference from single-cell transcriptomic data
Helena Todorov
Robrecht Cannoodt
Wouter Saelens
Yvan Saeys
Hoofdstuk in een boek
in
Gene regulatory networks : methods and protocols
2019
The RNA Atlas, a single nucleotide resolution map of the human transcriptome
Lucia Lorenzi
Hua-Sheng Chiu
Francisco Avila Cobos
Stephen Gross
Pieter-Jan Volders
Robrecht Cannoodt
Justine Nuytens
Katrien Vanderheyden
Jasper Anckaert
Steve Lefever
et al.
Preprint
2019
2018
A comprehensive evaluation of module detection methods for gene expression data
Wouter Saelens
Robrecht Cannoodt
Yvan Saeys
A1
Artikel in een tijdschrift
in
NATURE COMMUNICATIONS
2018
Genomic amplifications and distal 6q loss : novel markers for poor survival in high-risk neuroblastoma patients
Pauline Depuydt
Valentina Boeva
Toby D Hocking
Robrecht Cannoodt
Inge M Ambros
Peter F Ambros
Shahab Asgharzadeh
Edward F Attiyeh
Valérie Combaret
Raffaella Defferrari
et al.
A1
Artikel in een tijdschrift
in
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE
2018
IncGraph : incremental graphlet counting for topology optimisation
Robrecht Cannoodt
Joeri Ruyssinck
Jana Ramon
Katleen De Preter
Yvan Saeys
A1
Artikel in een tijdschrift
in
PLOS ONE
2018
The transcription factor ZEB2 is required to maintain the tissue-specific identities of macrophages
Charlotte Scott
Wouter T'Jonck
Liesbet Martens
Helena Todorov
Dorine Sichien
Bieke Soen
Johnny Bonnardel
Sofie De Prijck
Niels Vandamme
Robrecht Cannoodt
et al.
A1
Artikel in een tijdschrift
in
IMMUNITY
2018
2017
Early and late effects of pharmacological ALK inhibition on the neuroblastoma transcriptome
Shana Claeys
Geertrui Denecker
Robrecht Cannoodt
Candy Kumps
Kaat Durinck
Franki Speleman
Katleen De Preter
A1
Artikel in een tijdschrift
in
ONCOTARGET
2017
Genomic amplifications and distal 6q loss are novel markers for poor survival in high-risk neuroblastoma patients
Pauline Depuydt
Valentina Boeva
Toby D Hocking
Robrecht Cannoodt
Inge M Ambros
Peter F Ambros
Shahab Asgharzadeh
Edward F Attiyeh
Valérie Combaret
Raffaella Defferrari
et al.
C3
Conferentie
2017
Identification of novel, rare markers for poor survival in high-risk neuroblastoma patients by merging and reanalysing existing datasets
Pauline Depuydt
Valentina Boeva
Toby Hocking
Robrecht Cannoodt
Inge Ambros
Peter Ambros
Shahab Asgharzadeh
Edward Attiyeh
Valérie Combaret
Raffaella Defferrari
et al.
C3
Conferentie
2017
arrEYE : a customized platform for high-resolution copy number analysis of coding and noncoding regions of known and candidate retinal dystrophy genes and retinal noncoding RNAs
Caroline Van Cauwenbergh
Kristof Van Schil
Robrecht Cannoodt
Miriam Bauwens
Thalia Van Laethem
Sarah De Jaegere
Wouter Steyaert
Tom Sante
Björn Menten
Bart Leroy
et al.
A1
Artikel in een tijdschrift
in
GENETICS IN MEDICINE
2017
2016
Computational methods for trajectory inference from single-cell transcriptomics
Robrecht Cannoodt
Wouter Saelens
Yvan Saeys
A1
Artikel in een tijdschrift
in
EUROPEAN JOURNAL OF IMMUNOLOGY
2016
Dissecting the NOTCH1 driven transcriptional landscape in T-cell acute lymphoblastic leukemia at single cell level
Karen Verboom
Kaat Durinck
Celine Everaert
Robrecht Cannoodt
Pieter Van Vlierberghe
Jo Vandesompele
Franki Speleman
C3
Conferentie
2016
Improving marker gene discovery from high-dimensional single-cell snapshot data
Robrecht Cannoodt
Wouter Saelens
Katleen De Preter
Yvan Saeys
C3
Conferentie
2016
Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma
Anneleen Decock
Maté Ongenaert
Robrecht Cannoodt
Kimberly Verniers
Bram De Wilde
Genevieve Laureys
Nadine Van Roy
Ana Pilar Berbegall
Julie Bienertova-Vasku
Nick Bown
et al.
A1
Artikel in een tijdschrift
in
ONCOTARGET
2016
Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma
Anneleen Decock
Maté Ongenaert
Robrecht Cannoodt
Kimberly Verniers
Bram De Wilde
Genevieve Laureys
Nadine Van Roy
Ana Pilar Berbegall
Julie Bienertova-Vasku
Nick Bown
et al.
C3
Conferentie
2016
The genomic region encompassing the overlapping SOX11 and Lnc-SOX11-1:1 loci exhibits a complex DNA copy number and mRNA expression pattern
Bieke Decaesteker
Sara De Brouwer
Robrecht Cannoodt
Dries Rombaut
Wouter Van Loocke
Annelies Fieuw
Fanny De Vloed
Pieter-Jan Volders
Björn Menten
Rogier Versteeg
et al.
C3
Conferentie
2016
Unbiased modelling of dynamic processes with single-cell RNA-sequencing
Robrecht Cannoodt
Wouter Saelens
Katleen De Preter
Yvan Saeys
C3
Conferentie
2016
Unbiased modelling of dynamic processes with single-cell RNA-sequencing
Robrecht Cannoodt
Wouter Saelens
Katleen De Preter
Yvan Saeys
C3
Conferentie
2016
Unbiased modelling of dynamic processes with single-cell RNA-sequencing
Robrecht Cannoodt
Wouter Saelens
Katleen De Preter
Yvan Saeys
C3
Conferentie
2016
2015
Differential module analysis in neuroblastoma regulatory networks
Robrecht Cannoodt
Anneleen Beckers
Caroline Van Cauwenbergh
Franki Speleman
Katleen De Preter
Yvan Saeys
C3
Conferentie
2015
Inferring developmental chronologies from single cell RNA
Robrecht Cannoodt
Wouter Saelens
Katleen De Preter
Yvan Saeys
C3
Conferentie
2015
Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma
Anneleen Decock
Maté Ongenaert
Robrecht Cannoodt
Kimberly Verniers
Bram De Wilde
Genevieve Laureys
Nadine Van Roy
Ana Pilar Berbegall
Julie Bienertova-Vasku
Nick Bown
et al.
C3
Conferentie
2015
2014
Differential module analysis in neuroblastoma regulatory networks
Robrecht Cannoodt
Anneleen Beckers
Caroline Van Cauwenbergh
Katleen De Preter
Yvan Saeys
C3
Conferentie
2014
Identifying novel neuroblastoma oncogenes using semi-supervised learning
Leen De Baets
Robrecht Cannoodt
Joeri Ruyssinck
Katleen De Preter
Tom Dhaene
Yvan Saeys
C3
Conferentie
2014
2013
Network inference by integrating biclustering and feature selection
Robrecht Cannoodt
Joeri Ruyssinck
Katleen De Preter
Tom Dhaene
Yvan Saeys
C3
Conferentie
2013