Research Explorer

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Researcher

Pieter Verschaffelt

Awards & Distinctions

20 Results

2025

Direct construction of sparse suffix arrays with Libsais

Simon Van de VyverTibo Vande MoortelePeter DawyndtBart MesuerePieter Verschaffelt

PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

Tibo Vande MoortelePieter VerschaffeltQingyao HuangNadezhda T. DonchevaTanja HolsteinCaroline JachmannPeter DawyndtLennart MartensBart MesuereTim Van Den Bossche

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

The Microbiologist’s Guide to Metaproteomics

Tim Van Den BosscheJean ArmengaudDirk BenndorfJose Alfredo Blakeley-RuizMadita BrauerKai ChengMarybeth CreskeyDaniel FigeysLucia GrengaTimothy J Griffin et al.

Unipept in 2024 : expanding metaproteomics analysis with support for missed cleavages and semitryptic and nontryptic peptides

Tibo Vande MoorteleBram DevlaminckSimon Van de VyverTim Van Den BosscheLennart MartensPeter DawyndtBart MesuerePieter Verschaffelt

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2024

Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Tim Van Den BosschePieter VerschaffeltTibo Vande MoortelePeter DawyndtLennart MartensBart Mesuere

Bookchapter in Protein bioinformatics

The Peptonizer2000: bringing confidence to metaproteomics

Tanja HolsteinPieter VerschaffeltTim Van Den BosscheSimon Van de VyverLennart MartensBart MesuereThilo Muth

2023

Building the Unipept Ecosystem : empowering high-throughput metaproteomics data analysis for characterizing complex microbial communities

Pieter VerschaffeltPeter DawyndtLennart MartensBart Mesuere

Unipept Desktop 2.0 : construction of targeted reference protein databases for metaproteogenomics analyses

Pieter VerschaffeltAlessandro TancaMarcello AbbondioTim Van Den BosscheTibo Vande MoortelePeter DawyndtLennart MartensBart Mesuere

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2022

Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Kay SchallertPieter VerschaffeltBart MesuereDirk BenndorfLennart MartensTim Van Den Bossche

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

UMGAP : the Unipept MetaGenomics analysis pipeline

Felix Van der JeugtRien MaertensAranka SteyaertPieter VerschaffeltCaroline De TenderPeter DawyndtBart Mesuere

A1 Journal Article in BMC GENOMICS

Unipept visualizations : an interactive visualization library for biological data

Pieter VerschaffeltJames CollierAlexander BotzkiLennart MartensPeter DawyndtBart Mesuere

A1 Journal Article in BIOINFORMATICS

2021

Critical Assessment of MetaProteome Investigation (CAMPI) : a multi-laboratory comparison of established workflows

Tim Van Den BosscheBenoit J. KunathKay SchallertStephanie S. SchäpePaul E. AbrahamJean ArmengaudMagnus Ø. ArntzenAriane BassignaniDirk BenndorfStephan Fuchs et al.

A1 Journal Article in NATURE COMMUNICATIONS

Critical assessment of metaproteome investigation (CAMPI) : a multi-lab comparison of established workflows

Tim Van Den BosscheBenoit J. KunathKay SchallertStephanie S. SchäpePaul E. AbrahamJean ArmengaudMagnus Ø. ArntzenAriane BassignaniDirk BenndorfStephan Fuchs et al.

MegaGO : a fast yet powerful approach to assess functional gene ontology similarity across meta-omics data sets

Pieter VerschaffeltTim Van Den BosscheWassim GabrielMichał BurdukiewiczAlessio SoggiuLennart MartensBernhard Y. RenardHenning SchiebenhoeferBart Mesuere

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Pout2Prot : an efficient tool to create protein (sub)groups from Percolator output files

Tim Van Den BosscheKay SchallertPieter VerschaffeltBart MesuereDirk BenndorfLennart Martens

Unipept Desktop : a faster, more powerful metaproteomics results analysis tool

Pieter VerschaffeltTim Van Den BosscheLennart MartensPeter DawyndtBart Mesuere

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2020

Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

Tim Van Den BosschePieter VerschaffeltKay SchallertHarald BarsnesPeter DawyndtDirk BenndorfBernhard Y. RenardBart MesuereLennart MartensThilo Muth

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Proceedings of the EuBIC-MS 2020 Developers’ Meeting

Christopher AshwoodWout BittremieuxEric W. DeutschNadezhda T. DonchevaViktoria DorferRalf GabrielsVladimir GorshkovSurya GuptaAndrew R. JonesLukas Käll et al.

A2 Journal Article in EUPA OPEN PROTEOMICS

Unipept CLI 2.0 : adding support for visualizations and functional annotations

Pieter VerschaffeltPhilippe Van ThienenTim Van Den BosscheFelix Van der JeugtCaroline De TenderLennart MartensPeter DawyndtBart Mesuere

A1 Journal Article in BIOINFORMATICS

2019

Unipept 4.0 : functional analysis of metaproteome data

Robbert Gurdeep SinghAlessandro TancaAntonio PalombaFelix Van der JeugtPieter VerschaffeltSergio UzzauLennart MartensPeter DawyndtBart Mesuere

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH