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Researcher
Pieter Verschaffelt
Profile
Projects
Publications
Activities
Awards & Distinctions
15
Results
2024
Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial
Tim Van Den Bossche
Pieter Verschaffelt
Tibo Vande Moortele
Peter Dawyndt
Lennart Martens
Bart Mesuere
Bookchapter
in
Protein bioinformatics
2024
2023
Building the Unipept Ecosystem : empowering high-throughput metaproteomics data analysis for characterizing complex microbial communities
Pieter Verschaffelt
Peter Dawyndt
Lennart Martens
Bart Mesuere
Dissertation
2023
Unipept Desktop 2.0 : construction of targeted reference protein databases for metaproteogenomics analyses
Pieter Verschaffelt
Alessandro Tanca
Marcello Abbondio
Tim Van Den Bossche
Tibo Vande Moortele
Peter Dawyndt
Lennart Martens
Bart Mesuere
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2023
2022
Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files
Kay Schallert
Pieter Verschaffelt
Bart Mesuere
Dirk Benndorf
Lennart Martens
Tim Van Den Bossche
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2022
UMGAP : the Unipept MetaGenomics analysis pipeline
Felix Van der Jeugt
Rien Maertens
Aranka Steyaert
Pieter Verschaffelt
Caroline De Tender
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
BMC GENOMICS
2022
Unipept visualizations : an interactive visualization library for biological data
Pieter Verschaffelt
James Collier
Alexander Botzki
Lennart Martens
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
BIOINFORMATICS
2022
2021
Critical Assessment of MetaProteome Investigation (CAMPI) : a multi-laboratory comparison of established workflows
Tim Van Den Bossche
Benoit J. Kunath
Kay Schallert
Stephanie S. Schäpe
Paul E. Abraham
Jean Armengaud
Magnus Ø. Arntzen
Ariane Bassignani
Dirk Benndorf
Stephan Fuchs
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2021
Critical assessment of metaproteome investigation (CAMPI) : a multi-lab comparison of established workflows
Tim Van Den Bossche
Benoit J. Kunath
Kay Schallert
Stephanie S. Schäpe
Paul E. Abraham
Jean Armengaud
Magnus Ø. Arntzen
Ariane Bassignani
Dirk Benndorf
Stephan Fuchs
et al.
Preprint
2021
MegaGO : a fast yet powerful approach to assess functional gene ontology similarity across meta-omics data sets
Pieter Verschaffelt
Tim Van Den Bossche
Wassim Gabriel
Michał Burdukiewicz
Alessio Soggiu
Lennart Martens
Bernhard Y. Renard
Henning Schiebenhoefer
Bart Mesuere
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2021
Pout2Prot : an efficient tool to create protein (sub)groups from Percolator output files
Tim Van Den Bossche
Kay Schallert
Pieter Verschaffelt
Bart Mesuere
Dirk Benndorf
Lennart Martens
Preprint
2021
Unipept Desktop : a faster, more powerful metaproteomics results analysis tool
Pieter Verschaffelt
Tim Van Den Bossche
Lennart Martens
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2021
2020
Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis
Tim Van Den Bossche
Pieter Verschaffelt
Kay Schallert
Harald Barsnes
Peter Dawyndt
Dirk Benndorf
Bernhard Y. Renard
Bart Mesuere
Lennart Martens
Thilo Muth
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2020
Proceedings of the EuBIC-MS 2020 Developers’ Meeting
Christopher Ashwood
Wout Bittremieux
Eric W. Deutsch
Nadezhda T. Doncheva
Viktoria Dorfer
Ralf Gabriels
Vladimir Gorshkov
Surya Gupta
Andrew R. Jones
Lukas Käll
et al.
A2
Journal Article
in
EUPA OPEN PROTEOMICS
2020
Unipept CLI 2.0 : adding support for visualizations and functional annotations
Pieter Verschaffelt
Philippe Van Thienen
Tim Van Den Bossche
Felix Van der Jeugt
Caroline De Tender
Lennart Martens
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
BIOINFORMATICS
2020
2019
Unipept 4.0 : functional analysis of metaproteome data
Robbert Gurdeep Singh
Alessandro Tanca
Antonio Palomba
Felix Van der Jeugt
Pieter Verschaffelt
Sergio Uzzau
Lennart Martens
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2019