Research Explorer

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Researcher

Niklaas Colaert

Awards & Distinctions

27 Results

2015

The iceLogo web server and SOAP service for determining protein consensus sequences

Davy MaddeleinNiklaas ColaertIain BuchananNiels HulstaertKris GevaertLennart Martens

A1 Journal Article in NUCLEIC ACIDS RESEARCH

2013

PiTRAQ, a strategy to simultaneously correlate protein expression and phosphorylation stoichiometry between different samples: evaluation on different mass spectrometers

Pieter GlibertMaarten DhaenensPaulien MeertNiklaas ColaertFilip Van NieuwerburghLennart MartensDieter Deforce

The Online Protein Processing Resource (TOPPR) : a database and analysis platform for protein processing events

Niklaas ColaertDavy MaddeleinFrancis ImpensPetra Van DammeKim PlasmanKenny HelsensNiels HulstaertJoël VandekerckhoveKris GevaertLennart Martens

A1 Journal Article in NUCLEIC ACIDS RESEARCH

2012

Cells lacking β-actin are genetically reprogrammed and maintain conditional migratory capacity

Davina TondeleirAnja LambrechtsMatthias MüllerVeronique JonckheereThierry DollDrieke VandammeKarima BakkaliDavy WaterschootMarianne LemaistreOlivier Debeir et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Evaluation of a strategy for parallel protein phosphorylation and expression analysis

Pieter GlibertMaarten DhaenensPaulien MeertNiklaas ColaertFilip Van NieuwerburghLennart MartensDieter Deforce

Proteome profiling of the green sulfur bacterium Chlorobaculum tepidum by N-terminal proteomics

Kalliopi KouyianouPieter-Jan De BockNiklaas ColaertAntigoni NikolakiAikaterini AktoudianakiKris GevaertGeorgios Tsiotis

A1 Journal Article in PROTEOMICS

2011

A case study on the comparison of different software tools for automated quantification of peptides

Niklaas ColaertJoël VandekerckhoveLennart MartensKris Gevaert

Bookchapter in Gel-free proteomics : methods and protocols

A comparison of MS2-based label-free quantitative proteomic techniques with regards to accuracy and precision

Niklaas ColaertJoël VandekerckhoveKris GevaertLennart Martens

A1 Journal Article in PROTEOMICS

A reproducibility-based evaluation procedure for quantifying the differences between MS/MS peak intensity normalization methods

Sven DegroeveNiklaas ColaertJoël VandekerckhoveKris GevaertLennart Martens

A1 Journal Article in PROTEOMICS

Analysis of the resolution limitations of peptide identification algorithms

Niklaas ColaertSven DegroeveKenny HelsensLennart Martens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Combining quantitative proteomics data processing workflows for greater sensitivity

Niklaas ColaertChristophe Van HueleSven DegroeveAn StaesJoël VandekerckhoveKris GevaertLennart Martens

A1 Journal Article in NATURE METHODS

Digging deeper in the data, novel approaches and analysis methods in quantitative peptide-centric proteomics

Niklaas ColaertKris GevaertLennart Martens

N-Terminal combined fractional diagonal chromatographic (COFRADIC) analysis of the human platelet proteome

Francis ImpensKenny HelsensNiklaas ColaertLennart MartensJoël VandekerckhoveKris Gevaert

Bookchapter in Platelet proteomics : principles, analysis, and applications

RIBAR and xRIBAR: methods for reproducible relative MS/MS-based label-free protein quantification

Niklaas ColaertKris GevaertLennart Martens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Redox proteomics of protein-bound methionine oxidation

Bart GhesquièreVeronique JonckheereNiklaas ColaertJoost Van DurmeEvy TimmermanMarc GoethalsJoost SchymkowitzFrederic RousseauJoël VandekerckhoveKris Gevaert

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

compomics-utilities: an open-source Java library for computational proteomics

Harald BarsnesMarc VaudelNiklaas ColaertKenny HelsensAlbert SickmannFrode S BervenLennart Martens

A1 Journal Article in BMC BIOINFORMATICS

thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files

Niklaas ColaertHarald BarsnesMarc VaudelKenny HelsensEvy TimmermanAlbert SickmannKris GevaertLennart Martens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2010

A quantitative proteomics design for systematic identification of protease cleavage events

Francis ImpensNiklaas ColaertKenny HelsensBart GhesquièreEvy TimmermanPieter-Jan De BockBenjamin M ChainJoël VandekerckhoveKris Gevaert

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Complementary positional proteomics for screening substrates of endo- and exoproteases

Petra Van DammeAn StaesSilvia BronsomsKenny HelsensNiklaas ColaertEvy TimmermanFrancesc X AvilesJoël VandekerckhoveKris Gevaert

A1 Journal Article in NATURE METHODS

MS-driven protease substrate degradomics

Francis ImpensNiklaas ColaertKenny HelsensKim PlasmanPetra Van DammeJoël VandekerckhoveKris Gevaert

A1 Journal Article in PROTEOMICS

Rover: a tool to visualize and validate quantitative proteomics data from different sources

Niklaas ColaertKenny HelsensFrancis ImpensJoël VandekerckhoveKris Gevaert

A1 Journal Article in PROTEOMICS

The substrate specificity profile of human granzyme A

Petra Van DammeSebastian Maurer-StrohHan HaoNiklaas ColaertEvy TimmermanFrank EisenhaberJoël VandekerckhoveKris Gevaert

A1 Journal Article in BIOLOGICAL CHEMISTRY

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics

Kenny HelsensNiklaas ColaertHarald BarsnesThilo MuthKristian FlikkaAn StaesEvy TimmermanSteffi WortelkampAlbert SickmannJoël Vandekerckhove et al.

A1 Journal Article in PROTEOMICS

2009

Analysis of Protein Processing by N-terminal Proteomics Reveals Novel Species-specific Substrate Determinants of Granzyme B Orthologs

Petra Van DammeSebastian Maurer-StrohKim PlasmanJoost Van DurmeNiklaas ColaertEvy TimmermanPieter-Jan De BockMarc GoethalsFrederic RousseauJoost Schymkowitz et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Improved visualization of protein consensus sequences by iceLogo

Niklaas ColaertKenny HelsensLennart MartensJoël VandekerckhoveKris Gevaert

A1 Journal Article in NATURE METHODS

In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography

Bart GhesquièreNiklaas ColaertKenny HelsensLien DejagerCaroline VanhauteKatleen VerleysenKoen KasEvy TimmermanMarc GoethalsClaude Libert et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans

Thomas ArnesenPetra Van DammeBogdan PolevodaKenny HelsensRune EvjenthNiklaas ColaertJan Erik VarhaugJoël VandekerckhoveJohan LillehaugFred Sherman et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA