Research Explorer

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Researcher

Michiel Stock

46 Results

2022

BioCCP.jl : collecting coupons in combinatorial biotechnology

Kirsten Van HuffelMichiel StockBernard De Baets

A1 Journal Article in BIOINFORMATICS

Covering the Combinatorial Design Space of Multiplex CRISPR/Cas Experiments in Plants

Kirsten Van HuffelMichiel StockTom RuttinkBernard De Baets

U Journal Article in Frontiers in Plant Science

Digital phagograms: predicting phage infectivity through a multilayer machine learning approach

Cédric LoodDimitri BoeckaertsMichiel StockBernard De BaetsRob LavigneVera van NoortYves Briers

A1 Journal Article in CURRENT OPINION IN VIROLOGY

Equivalent electrical circuits and their use across electrochemical impedance spectroscopy application domains

Maxime Van HaeverbekeMichiel StockBernard De Baets

A1 Journal Article in IEEE ACCESS

Identification of Phage Receptor-Binding Protein Sequences with Hidden Markov Models and an Extreme Gradient Boosting Classifier

Dimitri BoeckaertsMichiel StockBernard De BaetsYves Briers

U Journal Article in Viruses

On the pivotal role of water potential to model plant physiological processes

Tom De SwaefOlivier PietersSimon AppeltansIrene Borra-SerranoWillem CoudronValentin CouvreurSarah GarréPeter LootensBart NicolaïLeroi PolsClément Saint CastJakub ŠalagovičMaxime Van HaeverbekeMichiel StockFrancis wyffels

A2 Journal Article in IN SILICO PLANTS

Reservoir computing with plants

Olivier PietersFrancis wyffelsTom De SwaefMichiel Stock

2021

Cold-start problems in data-driven prediction of drug-drug interaction effects

Pieter DewulfMichiel StockBernard De Baets

A1 Journal Article in PHARMACEUTICALS

Crowdsourced mapping of unexplored target space of kinase inhibitors

Anna CichonskaBalaguru RavikumarRobert J. AllawayFangping WanSungjoon ParkOlexandr IsayevShuya LiMichael MasonAndrew LambZiaurrehman TanoliMinji JeonSunkyu KimMariya PopovaStephen CapuzziJianyang ZengKristen DangGregory KoytigerJaewoo KangCarrow I. WellsTimothy M. WillsonTudor I. OpreaAvner SchlessingerDavid H. DrewryGustavo StolovitzkyKrister WennerbergJustin GuinneyTero AittokallioDimitri BoeckaertsMichiel StockBernard De BaetsYves Brierson behalf of IDG-DREAM Drug-Kinase Binding

A1 Journal Article in NATURE COMMUNICATIONS

Disentangling the information in species interaction networks

Michiel StockLaura HoebekeBernard De Baets

A1 Journal Article in ENTROPY

Optimal transportation theory for species interaction networks

Michiel StockTimothee PoisotBernard, de Baets

A1 Journal Article in ECOLOGY AND EVOLUTION

Otolith identification using a deep hierarchical classification model

Michiel StockBac Nguyen CongWouter CourtensHilbran VerstraeteEric StienenBernard De Baets

A1 Journal Article in COMPUTERS AND ELECTRONICS IN AGRICULTURE

Pairwise learning for predicting pollination interactions based on traits and phylogeny

Michiel StockNiels PiotSarah VanbesienJoris MeysGuy SmaggheBernard De Baets

A1 Journal Article in ECOLOGICAL MODELLING

PhaLP : a database for the study of phage lytic proteins and their evolution

Bjorn CrielSteff TaelmanWim Van CriekingeMichiel StockYves Briers

A1 Journal Article in VIRUSES-BASEL

Practical equivalent electrical circuit identification for electrochemical impedance spectroscopy analysis with gene expression programming

Maxime Van HaeverbekeMichiel StockBernard De Baets

A1 Journal Article in IEEE TRANSACTIONS ON INSTRUMENTATION AND MEASUREMENT

Predicting bacteriophage hosts based on sequences of annotated receptor-binding proteins

Dimitri BoeckaertsMichiel StockBjorn CrielHans GerstmansBernard De BaetsYves Briers

A1 Journal Article in SCIENTIFIC REPORTS

Rapid and high-throughput evaluation of diverse configurations of engineered lysins using the VersaTile technique

Lisa DuyvejonckHans GerstmansMichiel StockDennis GrimonRob LavigneYves Briers

A1 Journal Article in ANTIBIOTICS-BASEL

2020

A general-purpose toolbox for efficient Kronecker-based learning

Michiel StockTapio PahikkalaAntti AirolaBernard De Baets

Algebraic shortcuts for leave-one-out cross-validation in supervised network inference

Michiel StockTapio PahikkalaAntti AirolaWillem WaegemanBernard De Baets

A1 Journal Article in BRIEFINGS IN BIOINFORMATICS

Gloxinia—an open-source sensing platform to monitor the dynamic responses of plants

Olivier PietersTom De SwaefPeter LootensMichiel StockIsabel Roldán-RuizFrancis wyffels

A1 Journal Article in SENSORS

Information content in pollination network reveals missing interactions

Michiel StockNiels PiotSarah VanbesienBernard VaissièreClémentine Coiffait-GombaultGuy SmaggheBernard De Baets

A1 Journal Article in ECOLOGICAL MODELLING

Limitations of snapshot hyperspectral cameras to monitor plant response dynamics in stress-free conditions

Olivier PietersTom De SwaefPeter LootensMichiel StockIsabel Roldán-RuizFrancis wyffels

A1 Journal Article in COMPUTERS AND ELECTRONICS IN AGRICULTURE

Predicting pharmaceutical particle size distributions using kernel mean embedding

Daan Van HauwermeirenMichiel StockThomas De BeerIngmar Nopens

A1 Journal Article in PHARMACEUTICS

Predictive design of sigma factor-specific promoters

Maarten Van BremptJim ClauwaertFriederike MeyMichiel StockJo MaertensWillem WaegemanMarjan De Mey

A1 Journal Article in NATURE COMMUNICATIONS

2019

EcologicalNetworks.jl : analysing ecological networks of species interactions

Timothee PoisotZachary BelisleLaura HoebekeMichiel StockPiotr Szefer

A1 Journal Article in ECOGRAPHY

Guiding mineralization co-culture discovery using Bayesian optimization

Aisling DalyMichiel StockJan BaetensBernard De Baets

A1 Journal Article in ENVIRONMENTAL SCIENCE & TECHNOLOGY

Kernel mean embedding of distributions : a new data-driven model approach for modelling a continuous pharmaceutical twin-screw granulation process

Daan Van HauwermeirenMichiel StockThomas De BeerIngmar Nopens

X-ray microtomography and linear discriminant analysis enable detection of embolism-related acoustic emissions

Niels De BaerdemaekerMichiel StockJan Van den BulckeBernard De BaetsLuc Van HoorebekeKathy Steppe

A1 Journal Article in PLANT METHODS

2018

A comparative study of pairwise learning methods based on kernel ridge regression

Michiel StockTapio PahikkalaAntti AirolaBernard De BaetsWillem Waegeman

A1 Journal Article in NEURAL COMPUTATION

Liquid-to-solid ratio control as an advanced process control solution for continuous twin-screw wet granulation

Niels NicolaïFien De LeersnyderDana CopotMichiel StockClara-Mihaela IonescuKrist V GernaeyIngmar NopensThomas De Beer

A1 Journal Article in AICHE JOURNAL

2017

Exact and efficient algorithms for pairwise learning

Michiel StockBernard De BaetsWillem Waegeman

Linear filtering reveals false negatives in species interaction data

Michiel StockTimothée PoisotWillem WaegemanBernard De Baets

A1 Journal Article in SCIENTIFIC REPORTS

The use of shallow convolutional neural networks in predicting promotor strength in Eschericha coli

Jim ClauwaertMichiel StockMarjan De MeyWillem Waegeman

miSTAR : miRNA target prediction through modeling quantitative and qualitative miRNA binding site information in a stacked model structure

Gert Van PeerAyla De PaepeMichiel StockJasper AnckaertPieter-Jan VoldersJo VandesompeleBernard De BaetsWillem Waegeman

A1 Journal Article in NUCLEIC ACIDS RESEARCH

2016

Data-driven recipe completion using machine learning methods

Marlies De ClercqMichiel StockBernard De BaetsWillem Waegeman

A1 Journal Article in TRENDS IN FOOD SCIENCE & TECHNOLOGY

Exact and efficient top-K inference for multi-target prediction by querying separable linear relational models

Michiel StockKrzysztof DembczynskiBernard De BaetsWillem Waegeman

A1 Journal Article in DATA MINING AND KNOWLEDGE DISCOVERY

2015

A decoy-free approach to the identification of peptides

Giulia GonnelliMichiel StockJan VerwaerenDavy MaddeleinBernard De BaetsLennart MartensSven Degroeve

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Recipe completion using machine learning techniques

Marlies De ClercqMichiel StockBernard De BaetsWillem Waegeman

2014

A community effort to assess and improve drug sensitivity prediction algorithms

James C CostelloLaura M HeiserElisabeth GeorgiiMehmet GönenMichael P MendenNicholas J WangMukesh BansalMuhammad Ammad-ud-dinPetteri HintsanenSuleiman A KhanJohn-Patrick MpindiOlli KallioniemiAntti HonkelaTero AittokallioKrister WennerbergJames J CollinsDan GallahanDinah SingerJulio Saez-RodriguezSamuel KaskiJoe W GrayGustavo Stolovitzkythe NCI DREAM CommunictyBernard De BaetsMichiel StockWillem Waegeman

A1 Journal Article in NATURE BIOTECHNOLOGY

A two-step learning approach for solving full and almost full cold start problems in dyadic prediction

Tapio PahikkalaMichiel StockAntti AirolaTero AittokallioBernard De BaetsWillem Waegeman

Identification of functionally related enzymes by learning-to-rank methods

Michiel StockThomas FoberEyke HüllermeierSerghei GlincaGerhard KlebeTapio PahikkalaAntti AirolaBernard De BaetsWillem Waegeman

A1 Journal Article in IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

2013

Efficient regularized least-squares algorithms for conditional ranking on relational data

Tapio PahikkalaAntti AirolaMichiel StockBernard De BaetsWillem Waegeman

A1 Journal Article in MACHINE LEARNING

Exploration and prediction of interactions between methanotrophs and heterotrophs

Michiel StockSven HoefmanFrederiek-Maarten KerckhofNico BoonPaul De VosBernard De BaetsKim HeylenWillem Waegeman

A1 Journal Article in RESEARCH IN MICROBIOLOGY

2012

A kernel-based framework for learning graded relations from data

Willem WaegemanTapio PahikkalaAntti AirolaTapio SalakoskiMichiel StockBernard De Baets

A1 Journal Article in IEEE TRANSACTIONS ON FUZZY SYSTEMS

Conditional ranking algorithms for efﬁcient object retrieval and object querying on relational data

Willem WaegemanMichiel StockBernard De BaetsTapio PahikkalaAntti AirolaTapio Salakoski

Learning monadic and dyadic relations : three case studies in systems biology

Michiel StockTapio PahikkalaAntti AirolaTapio SalakoskiBernard De BaetsWillem Waegeman