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Researcher
Maté Ongenaert
Profile
Projects
Publications
Activities
Awards & Distinctions
56
Results
2018
A high-throughput 3’ UTR reporter screening identifies microRNA interactomes of cancer genes
Gert Van Peer
Evelien Mets
Shana Claeys
Ines De Punt
Steve Lefever
Maté Ongenaert
Pieter Rondou
Franki Speleman
Pieter Mestdagh
Jo Vandesompele
A1
Journal Article
in
PLOS ONE
2018
Integrated transcriptomic and epigenomic analysis of ovarian cancer reveals epigenetically silenced GULP1
Leonel Maldonado
Mariana Brait
Evgeny Izumchenko
Shahnaz Begum
Aditi Chatterjee
Tanusree Sen
Myriam Loyo
Alvaro Barbosa
Maria Luana Poeta
Eugene Makarev
et al.
A1
Journal Article
in
CANCER LETTERS
2018
2017
Stage 4S neuroblastoma tumors show a characteristic DNA methylation portrait
Anneleen Decock
Maté Ongenaert
Bram De Wilde
Bénédicte Brichard
Rosa Noguera
Franki Speleman
Jo Vandesompele
C3
Conference
2017
2016
DNA methylation profiling of primary neuroblastoma tumors using methyl-CpG-binding domain sequencing
Anneleen Decock
Maté Ongenaert
Wim Van Criekinge
Franki Speleman
Jo Vandesompele
A1
Journal Article
in
SCIENTIFIC DATA
2016
Exploring the neuroblastoma DNA methylome: from biology to biomarker
Anneleen Decock
Jo Vandesompele
Franki Speleman
Maté Ongenaert
Dissertation
2016
Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma
Anneleen Decock
Maté Ongenaert
Robrecht Cannoodt
Kimberly Verniers
Bram De Wilde
Genevieve Laureys
Nadine Van Roy
Ana Pilar Berbegall
Julie Bienertova-Vasku
Nick Bown
et al.
A1
Journal Article
in
ONCOTARGET
2016
Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma
Anneleen Decock
Maté Ongenaert
Robrecht Cannoodt
Kimberly Verniers
Bram De Wilde
Genevieve Laureys
Nadine Van Roy
Ana Pilar Berbegall
Julie Bienertova-Vasku
Nick Bown
et al.
C3
Conference
2016
Stage 4S neuroblastoma tumors show a characteristic DNA methylation portrait
Anneleen Decock
Maté Ongenaert
Bram De Wilde
Bénédicte Brichard
Rosa Noguera
Franki Speleman
Jo Vandesompele
A1
Journal Article
in
EPIGENETICS
2016
2015
Characterization of the genome-wide TLX1 binding profile in T-cell acute lymphoblastic leukemia
Kaat Durinck
Wouter Van Loocke
Joni Van der Meulen
Inge Van de Walle
Maté Ongenaert
Pieter Rondou
Annelynn Wallaert
CE de Bock
Nadine Van Roy
Bruce Poppe
et al.
A1
Journal Article
in
LEUKEMIA
2015
Genome wide expression profiling of p53 regulated miRNAs in neuroblastoma
Ali Rihani
Alan Van Goethem
Maté Ongenaert
Sara De Brouwer
Pieter-Jan Volders
Saurabh Agarwal
Katleen De Preter
Pieter Mestdagh
Jason Shohet
Franki Speleman
et al.
A1
Journal Article
in
SCIENTIFIC REPORTS
2015
Hidden genetic variation in LCA9-associated congenital blindness explained by 5′UTR mutations and copy-number variations of NMNAT1
Frauke Coppieters
Anne Laure Todeschini
Takuro Fujimaki
Annelot Baert
Marieke De Bruyne
Caroline Van Cauwenbergh
Hannah Verdin
Miriam Bauwens
Maté Ongenaert
Mineo Kondo
et al.
A1
Journal Article
in
HUMAN MUTATION
2015
Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma
Anneleen Decock
Maté Ongenaert
Robrecht Cannoodt
Kimberly Verniers
Bram De Wilde
Genevieve Laureys
Nadine Van Roy
Ana Pilar Berbegall
Julie Bienertova-Vasku
Nick Bown
et al.
C3
Conference
2015
2014
Genome-wide methylation analysis unravels differential DNA methylation patterns between (prognostic) neuroblastoma patient subgroups
Anneleen Decock
Maté Ongenaert
Ana Berbegall
Rosa Noguera
Jayne Murray
Michele Haber
Raymond L Stallings
Johannes H Schulte
Valérie Combaret
Gudrun Schleiermacher
et al.
C3
Conference
2014
Integrative analysis of the NOTCH1 regulatory network identifies key downstream lncRNAs in acute T-cell lymphoblastic leukemia and normal T-cell development
Annelynn Wallaert
Kaat Durinck
Pieter Rondou
Inge Van de Walle
Wouter Van Loocke
Pieter-Jan Volders
Maté Ongenaert
Nadine Van Roy
Bruce Poppe
Yves Benoit
et al.
C3
Conference
2014
Promoter DNA-methylation in the TH-MYCN neuroblastoma mouse model
Anneleen Beckers
Wouter Van Loocke
Anneleen Decock
Maté Ongenaert
Jo Vandesompele
Franki Speleman
Katleen De Preter
C3
Conference
2014
The NOTCH1 driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia
Annelynn Wallaert
Kaat Durinck
Pieter Rondou
Inge Van de Walle
Wouter Vanloocke
Pieter-Jan Volders
Suzanne Vanhauwaert
Ellen Geerdens
Maté Ongenaert
Nadine Van Roy
et al.
C3
Conference
2014
miRBase Tracker : keeping track of microRNA annotation changes
Gert Van Peer
Steve Lefever
Jasper Anckaert
Anneleen Beckers
Ali Rihani
Alan Van Goethem
Pieter-Jan Volders
Fjoralba Zeka
Maté Ongenaert
Pieter Mestdagh
et al.
A1
Journal Article
in
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
2014
2013
Expanding the TLX1 regulate in T-cell acute lymphoblastic leukemia towards long non-coding RNAs
Kaat Durinck
Joni Van der Meulen
Maté Ongenaert
Pieter-Jan Volders
Annelynn Wallaert
Nadine Van Roy
Yves Benoit
Bruce Poppe
Pieter Mestdagh
Jo Vandesompele
et al.
C3
Conference
2013
Expanding the TLX1-regulome in T cell acute lymphoblastic leukemia towards long non-coding RNAs
Kaat Durinck
Joni Van der Meulen
Maté Ongenaert
Pieter-Jan Volders
Annelynn Wallaert
Nadine Van Roy
Yves Benoit
Bruce Poppe
Pieter Mestdagh
Jo Vandesompele
et al.
C3
Conference
2013
Genome wide expression, mutation and methylation analysis validates three new mouse models for neuroblastoma targeting MYCN, ALK and LIN28B for pre-clinical studies
Anneleen Beckers
Bram De Wilde
Maté Ongenaert
Candy Kumps
Johannes H Schulte
Jo Vandesompele
Katleen De Preter
Franki Speleman
C3
Conference
2013
Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers
Anneleen Decock
Maté Ongenaert
Jasmien Hoebeeck
Katleen De Preter
Gert Van Peer
Wim Van Criekinge
Ruth Ladenstein
Johannes H Schulte
Rosa Noguera
Raymond L Stallings
et al.
C3
Conference
2013
Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers
Anneleen Decock
Maté Ongenaert
Jasmien Hoebeeck
Katleen De Preter
Gert Van Peer
Wim Van Criekinge
Ruth Ladenstein
Johannes H. Schulte
Rosa Noguera
Raymond L. Stallings
et al.
C3
Conference
2013
Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers
Anneleen Decock
Maté Ongenaert
Jasmien Hoebeeck
Katleen De Preter
Gert Van Peer
Wim Van Criekinge
Ruth Ladenstein
Johannes H Schulte
Rosa Noguera
Raymond L Stallings
et al.
C3
Conference
2013
Identifying and validating DNA methylation biomarkers: the example of neuroblastoma
Anneleen Decock
Maté Ongenaert
Jasmien Hoebeeck
Katleen De Preter
Gert Van Peer
Wim Van Criekinge
Ruth Ladenstein
Johannes H Schulte
Rosa Noguera
Raymond L Stallings
et al.
C3
Conference
2013
Methylation-specific digital karyotyping of HPV16E6E7 expressing human keratinocytes identifies novel methylation events in cervical carcinogenesis
Renske DM Steenbergen
Maté Ongenaert
Suzanne Snellenberg
Geert Trooskens
Wendy F van der Meide
Deeksha Pandey
Noga Bloushtain-Qimron
Kornelia Polyak
Chris JLM Meijer
Peter JF Snijders
et al.
A1
Journal Article
in
JOURNAL OF PATHOLOGY
2013
Novel TAL1 targets beyond protein-coding genes: identification of TAL1-regulated microRNAs in T-cell acute lymphoblastic leukemia
Nadia C Correia
Kaat Durinck
AP Leite
Maté Ongenaert
Pieter Rondou
Franki Speleman
FJ Enquita
João T Barata
A1
Journal Article
in
LEUKEMIA
2013
The MYCN driven murine and human neuroblastoma methylome and dynamic regulation of chromatin regulators as a guide for epigenetic therapy
Anneleen Beckers
Anneleen Decock
Belamy Cheung
Daniel Carter
Gert Van Peer
Sara De Brouwer
Genevieve Laureys
Jo Vandesompele
Johannes H Schulte
Glenn Marshall
et al.
C3
Conference
2013
2012
Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers.
Anneleen Decock
Maté Ongenaert
Jasmien Hoebeeck
Katleen De Preter
Gert Van Peer
Wim Van Criekinge
Ruth Ladenstein
Johannes H Schulte
Rosa Noguera
Raymond L Stallings
et al.
A1
Journal Article
in
GENOME BIOLOGY
2012
Mapping the neuroblastoma epigenome
Maté Ongenaert
Anneleen Decock
Jo Vandesompele
Franki Speleman
C3
Conference
2012
Mapping the neuroblastoma epigenome: perspectives for improved prognostic biomarkers
Maté Ongenaert
Anneleen Decock
Genevieve Laureys
Jo Vandesompele
Franki Speleman
C3
Conference
2012
Mapping the neuroblastoma epigenome: perspectives for improved prognostic biomarkers
Maté Ongenaert
Anneleen Decock
Jo Vandesompele
Franki Speleman
C3
Conference
2012
MiR-137 is epigenetically silenced in MYCN amplified neuroblastoma and targets the polycomb repressive complex 2 (PRC2) component EZH2
Anneleen Beckers
Maté Ongenaert
Anneleen Decock
Candy Kumps
Filip Pattyn
Pieter Mestdagh
Johannes H. Schulte
Franki Speleman
Katleen De Preter
C3
Conference
2012
MiR-137 is epigenetically silenced in MYCN amplified neuroblastomas and targets the polycomb repressive complex 2 (PRC2) component EZH2
Anneleen Beckers
Maté Ongenaert
Anneleen Decock
Candy Kumps
Filip Pattyn
the Neuroblastoma Research Consortium (NRC)
Pieter Mestdagh
Johannes H Schulte
Franki Speleman
Katleen De Preter
C3
Conference
2012
Promoter methylation analysis identifies prognostic methylation biomarkers in neuroblastoma
Anneleen Decock
Maté Ongenaert
Jasmien Hoebeeck
Katleen De Preter
Gert Van Peer
Wim Van Criekinge
Ruth Ladenstein
Johannes H Schulte
Rosa Noguera
Raymond L Stallings
et al.
C3
Conference
2012
Semi-high-throughput epigenetic validation using MSP on a real-time qPCR platform
Anneleen Decock
Maté Ongenaert
Jo Vandesompele
Franki Speleman
C3
Conference
2012
2011
Exploring the neuroblastoma methylome using MBD2-seq
Maté Ongenaert
Anneleen Decock
Jo Vandesompele
Franki Speleman
C3
Conference
2011
Jasmonate response of the Nicotiana tabacum agglutinin promoter in Arabidopsis thaliana
Annelies Delporte
Nausicaä Lannoo
Gianni Vandenborre
Maté Ongenaert
Els Van Damme
A1
Journal Article
in
PLANT PHYSIOLOGY AND BIOCHEMISTRY
2011
Mapping the neuroblastoma epigenome
Maté Ongenaert
Anneleen Decock
Jo Vandesompele
Franki Speleman
C3
Conference
2011
Neuroblastoma epigenetics : from candidate gene approaches to genome-wide screenings
Anneleen Decock
Maté Ongenaert
Jo Vandesompele
Franki Speleman
A1
Journal Article
in
EPIGENETICS
2011
Semi-high throughput epigenetic validation using MSP on a real-time qPCR platform
Anneleen Decock
Maté Ongenaert
Jo Vandesompele
Franki Speleman
C3
Conference
2011
Semi-high throughput epigenetic validation using MSP on a real-time qPCR platform
Anneleen Decock
Maté Ongenaert
Jo Vandesompele
Franki Speleman
C3
Conference
2011
The microRNA body map : dissecting microRNA function through integrative genomics
Pieter Mestdagh
Steve Lefever
Filip Pattyn
Dana Ridzon
Erik Fredlund
Annelies Fieuw
Maté Ongenaert
Joëlle Vermeulen
Anne De Paepe
Linda Wong
et al.
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2011
2010
GULP1, a potential tumor suppressor gene in ovarian tumors and its utility as a biomarker
Leonel Maldonado
Mariana Brait
Shahnaz Begum
Aditi Chatterjee
Myriam Loyo
Alvaro Barbosa
M Luana Poeta
Vito M Fazio
Angioli Roberto
Elisabetta Tarquini
et al.
C3
Conference
2010
Integrating automated literature searches and text mining in biomarker discovery
Maté Ongenaert
Luc Dehaspe
C3
Conference
2010
The N-myc downstream regulated gene (NDRG) family: diverse functions, multiple applications
Veerle Melotte
Xianghu Qu
Maté Ongenaert
Wim Van Criekinge
Adriaan P de Bruine
H Scott Baldwin
Manon van Engeland
A1
Journal Article
in
FASEB JOURNAL
2010
2009
Cellular reprogramming
Maté Ongenaert
Wim Van Criekinge
Dissertation
2009
Critical evaluation of the use of bioinformatics as a theoretical tool to find high-potential sources of ACE inhibitory peptides
Lieselot Vercruysse
Guy Smagghe
Arie van der Bent
Aart van Amerongen
Maté Ongenaert
John Van Camp
A1
Journal Article
in
PEPTIDES
2009
Proteins with an Euonymus lectin-like domain are ubiquitous in Embryophyta
Elke Fouquaert
Willy J Peumans
Tom Vandekerckhove
Maté Ongenaert
Els Van Damme
A1
Journal Article
in
BMC PLANT BIOLOGY
2009
2008
Discovery of DNA methylation markers in cervical cancer using relaxation ranking
Maté Ongenaert
G Bea A Wisman
Haukeline H Volders
Alice J Koning
Ate GJ van der Zee
Wim Van Criekinge
Ed Schuuring
A1
Journal Article
in
BMC MEDICAL GENOMICS
2008
Genome-wide promoter analysis uncovers portions of the cancer methylome
MO HOQUE
MS KIM
KL OSTROW
J LIU
GBA WISMAN
HL PARK
ML POETA
C JERONIMO
R HENRIQUE
A LENDVAI
et al.
A1
Journal Article
in
CANCER RESEARCH
2008
PubMeth: a cancer methylation database combining text-mining and expert annotation
Maté Ongenaert
Leander Van Neste
Tim De Meyer
Gerben Menschaert
Sofie Bekaert
Wim Van Criekinge
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2008
Pubmeth: reviewed methylation database in cancer based on text-mining
Maté Ongenaert
Leander Van Neste
Tim De Meyer
Gerben Menschaert
Sofie Bekaert
Wim Van Criekinge
C1
Conference
2008
2007
Discovery of methylation markers using a relaxation ranking algorithm
Maté Ongenaert
Wim Van Criekinge
J STRAUB
A VAN DER ZEE
E SCHUURING
H SPOLDERS
B WISMAN
C1
Conference
2007
Genome wide promoter methylation analysis in neuroblastoma with perspectives for integrated molecular profiling
Jasmien Hoebeeck
Maté Ongenaert
Evi Michels
Katleen De Preter
Joëlle Vermeulen
Nurten Yigit
Anne De Paepe
Wim Van Criekinge
Franki Speleman
Jo Vandesompele
C3
Conference
2007
Phylogenetic and specificity studies of two-domain GNA-related lectins: generation of multispecificity through domain duplication and divergent evolution
Els Van Damme
S NAKAMURA-TSURUTA
DF SMITH
Maté Ongenaert
HC WINTER
P ROUGE
IJ GOLDSTEIN
H MO
J KOMINAMI
R CULERRIER
et al.
A1
Journal Article
in
BIOCHEMICAL JOURNAL
2007
2005
CpG island characterisation
Maté Ongenaert
Wim Van Criekinge
C1
Conference
2005