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Researcher
Kris Gevaert
Profile
Projects
Publications
Activities
Awards & Distinctions
477
Results
2023
A decoupled Virotrap approach to study the interactomes of N-terminal proteoforms
Annelies Bogaert
Tessa Van de Steene
Marnik Vuylsteke
Sven Eyckerman
Kris Gevaert
Bookchapter
in
Methods in Enzymology
2023
Adaptor protein complex interaction map in Arabidopsis identifies P34 as a common stability regulator
Peng Wang
Wei Siao
Xiuyang Zhao
Deepanksha Arora
Ren Wang
Dominique Eeckhout
Jelle Van Leene
Rahul Kumar
Anaxi Houbaert
Nancy De Winne
et al.
A1
Journal Article
in
NATURE PLANTS
2023
Complementary peptides represent a credible alternative to agrochemicals by activating translation of targeted proteins
M Ormancey
B Guillotin
R Merret
L Camborde
C Duboé
B Fabre
C Pouzet
Francis Impens
Delphi Van Haver
MC Carpentier
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2023
Employing non-targeted interactomics approach and subcellular fractionation to increase our understanding of the ghost proteome
Diego Fernando Garcia del Rio
Tristan Cardon
Sven Eyckerman
Isabelle Fournier
Amelie Bonnefond
Kris Gevaert
Michel Salzet
A1
Journal Article
in
ISCIENCE
2023
Expanded in vivo substrate profile of the yeast N-terminal acetyltransferase NatC
Petra Van Damme
Camilla Osberg
Veronique Jonckheere
Nina Glomnes
Kris Gevaert
Thomas Arnesen
Henriette Aksnes
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2023
Machine learning on large-scale proteomics data identifies tissue and cell-type specific proteins
Tine Claeys
Maxime Menu
Robbin Bouwmeester
Kris Gevaert
Lennart Martens
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2023
Macrophage resistance to ionizing radiation exposure is accompanied by decreased cathepsin D and increased transferrin receptor 1 expression
Ana Teresa Pinto
Ana Beatriz Machado
Hugo Osório
Marta Laranjeiro Pinto
Rui Vitorino
Gonçalo Justino
Cátia Santa
Flávia Castro
Tânia Cruz
Carla Rodrigues
et al.
A1
Journal Article
in
CANCERS
2023
Multi-allergen quantification in food using concatemer-based isotope dilution mass spectrometry : a collaborative study
Maxime Gavage
Kaatje Van Vlierberghe
Marc Dieu
Patsy Renard
Thierry Arnould
Kris Gevaert
Marc De Loose
Christof Van Poucke
Anne-Catherine Huet
Nathalie Gillard
A1
Journal Article
in
JOURNAL OF AOAC INTERNATIONAL
2023
Mutation of Arabidopsis SME1 and Sm core assembly improves oxidative stress resilience
Patrick Willems
Valerie Van Ruyskensvelde
Takanori Maruta
Robin Pottie
Álvaro Daniel Fernández Fernández
Jarne Pauwels
Matthew A. Hannah
Kris Gevaert
Frank Van Breusegem
Katrien Van Der Kelen
A1
Journal Article
in
FREE RADICAL BIOLOGY AND MEDICINE
2023
Protein interactors of 3-O sulfated heparan sulfates in human MCI and age-matched control cerebrospinal fluid
Andreia Sofia da Costa de Monica Ferreira
Evy Timmerman
An Staes
Marnik Vuylsteke
Louis De Muynck
Kris Gevaert
A1
Journal Article
in
SCIENTIFIC DATA
2023
Proteomic data and structure analysis combined reveal interplay of structural rigidity and flexibility on selectivity of cysteine cathepsins
Livija Tušar
Jure Loboda
Francis Impens
Piotr Sosnowski
Emmy Van Quickelberghe
Robert Vidmar
Hans Demol
Koen Sedeyn
Xavier Saelens
Matej Vizovišek
et al.
A1
Journal Article
in
COMMUNICATIONS BIOLOGY
2023
Reduced levels of misfolded and aggregated mutant p53 by proteostatic activation
Evelyne Naus
Marleen Derweduwe
Youlia Lampi
Annelies Claeys
Jarne Pauwels
Tobias Langenberg
Filip Claes
Jie Xu
Veerle Haemels
Zeynep Kalender Atak
et al.
A1
Journal Article
in
CELLS
2023
Structure–function study of a Ca <sup>2+</sup> -independent metacaspase involved in lateral root emergence
Simon Stael
Igor Sabljić
Dominique Audenaert
Thilde Andersson
Liana Tsiatsiani
Robert P. Kumpf
Andreu Vidal-Albalat
Cecilia Lindgren
Dominique Vercammen
Silke Jacques
et al.
U
Journal Article
in
Proceedings of the National Academy of Sciences
2023
Unraveling N-terminal proteoforms by N-terminomics and interactomics
Annelies Bogaert
Kris Gevaert
Dissertation
2023
2022
A new generation of AD biomarkers : 2019 to 2021
Jade Hawksworth
Esperanza Fernández
Kris Gevaert
A1
Journal Article
in
AGEING RESEARCH REVIEWS
2022
A strong cation exchange chromatography protocol for examining N-terminal proteoforms
Esperanza Fernández
Annelies Bogaert
Evy Timmerman
An Staes
Francis Impens
Kris Gevaert
Bookchapter
in
Yeast functional genomics : methods and protocols
2022
Abnormal concentrations of acetylated amino acids in cerebrospinal fluid in acetyl‐CoA transporter deficiency
Katarina Šikić
Tessa M. A. Peters
Eugenija Marušić
Ivana Čulo Čagalj
Danijela Petković Ramadža
Tamara Žigman
Ksenija Fumić
Esperanza Fernandez
Kris Gevaert
Željko Debeljak
et al.
A1
Journal Article
in
JOURNAL OF INHERITED METABOLIC DISEASE
2022
Binding of Orysata lectin induces an immune response in insect cells
Pengyu Chen
Kristof De Schutter
Jarne Pauwels
Kris Gevaert
Els Van Damme
Guy Smagghe
A1
Journal Article
in
INSECT SCIENCE
2022
Development and validation of a quantitative method for multiple allergen detection in food using concatemer-based isotope dilution mass spectrometry
Maxime Gavage
Kaatje Van Vlierberghe
Marc Dieu
Patsy Renard
Thierry Arnould
Marc De Loose
Kris Gevaert
Nathalie Gillard
Christof Van Poucke
A1
Journal Article
in
JOURNAL OF AOAC INTERNATIONAL
2022
Limited evidence for protein products of non-coding transcripts in the HEK293T cellular cytosol
Annelies Bogaert
Daria Fijalkowska
An Staes
Tessa Van de Steene
Hans Demol
Kris Gevaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2022
Machine learning on large-scale proteomics data identifies tissue- and cell type-specific proteins
Tine Claeys
Maxime Menu
Robbin Bouwmeester
Kris Gevaert
Lennart Martens
Preprint
2022
Mass spectrometry and the cellular surfaceome
Jarne Pauwels
Daria Fijalkowska
Sven Eyckerman
Kris Gevaert
A1
Journal Article
in
MASS SPECTROMETRY REVIEWS
2022
Novel assays monitoring direct glucocorticoid receptor protein activity exhibit high predictive power for ligand activity on endogenous gene targets
Laura Van Moortel
Jonathan Thommis
Brecht Maertens
An Staes
Dorien Clarisse
Delphine De Sutter
Claude Libert
Onno C. Meijer
Sven Eyckerman
Kris Gevaert
et al.
A1
Journal Article
in
BIOMEDICINE & PHARMACOTHERAPY
2022
Persuasion is better then force : how Caulobacter RHG1 convinces Arabidopsis thaliana of its beneficial character
Amber Lampens
Sofie Goormachtig
Kris Gevaert
Dissertation
2022
Proteome-wide cellular thermal shift assay reveals unexpected cross-talk between brassinosteroid and auxin signaling
Qing Lu
Yonghong Zhang
Joakim Hellner
Caterina Giannini
Xiangyu Xu
Jarne Pauwels
Qian Ma
Wim Dejonghe
Huibin Han
Brigitte Van De Cotte
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2022
RNAi of Mannosidase‐Ia in the Colorado potato beetle and changes in the midgut and peritrophic membrane
Dongdong Liu
Kristof De Schutter
Johann Far
An Staes
Koen Dewettinck
Loic Quinton
Kris Gevaert
Guy Smagghe
A1
Journal Article
in
PEST MANAGEMENT SCIENCE
2022
SAMBA controls cell division rate during maize development
Pan Gong
Michiel Bontinck
Kirin Demuynck
Jolien De Block
Kris Gevaert
Dominique Eeckhout
Geert Persiau
Stijn Aesaert
Griet Coussens
Maria Van Lijsebettens
et al.
A1
Journal Article
in
PLANT PHYSIOLOGY
2022
Selecting processing robust markers using high resolution mass spectrometry for the detection of milk in food products
Kaatje Van Vlierberghe
Maxime Gavage
Marc Dieu
Patsy Renard
Thierry Arnould
Nathalie Gillard
Katleen Coudijzer
Marc De Loose
Kris Gevaert
Christof Van Poucke
A1
Journal Article
in
JOURNAL OF AOAC INTERNATIONAL
2022
The final maturation state of β-actin involves N-terminal acetylation by NAA80, not N-terminal arginylation by ATE1
Adrian Drazic
Evy Timmerman
Ulrike Kajan
Michaël Marie
Sylvia Varland
Francis Impens
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
JOURNAL OF MOLECULAR BIOLOGY
2022
Transcriptional analysis in the Arabidopsis roots reveals new regulators that link rac-GR24 treatment with changes in flavonol accumulation, root hair elongation and lateral root density
Sylwia Magdalena Struk
Lukas Braem
Cedrick Matthys
Alan Walton
Nick Vangheluwe
Stan Van Praet
Lingxiang Jiang
Pawel Radoslaw Baster
Carolien De Cuyper
François-Didier Boyer
et al.
A1
Journal Article
in
PLANT AND CELL PHYSIOLOGY
2022
Triazolinedione protein modification : from an overlooked off-target effect to a tryptophan-based bioconjugation strategy
Klaas Decoene
Kamil Ünal
An Staes
Olivier Zwaenepoel
Jan Gettemans
Kris Gevaert
Johan Winne
Annemieke Madder
A1
Journal Article
in
CHEMICAL SCIENCE
2022
2021
A Phelipanche ramosa KAI2 protein perceives strigolactones and isothiocyanates enzymatically
Alexandre de Saint Germain
Anse Jacobs
Guillaume Brun
Jean-Bernard Pouvreau
Lukas Braem
David Cornu
Guillaume Clavé
Emmanuelle Baudu
Vincent Steinmetz
Vincent Servajean
et al.
A1
Journal Article
in
PLANT COMMUNICATIONS
2021
An AKT2-specific nanobody that targets the hydrophobic motif induces cell cycle arrest, autophagy and loss of focal adhesions in MDA-MB-231 cells
Tijs Merckaert
Olivier Zwaenepoel
Kris Gevaert
Jan Gettemans
A1
Journal Article
in
BIOMEDICINE & PHARMACOTHERAPY
2021
Importance of extracellular vesicle secretion at the blood-cerebrospinal fluid interface in the pathogenesis of Alzheimer’s disease
Charysse Vandendriessche
Sriram Balusu
Caroline Van Cauwenberghe
Marjana Brkic
Marie Pauwels
Nele Plehiers
Arnout Bruggeman
Pieter Dujardin
Griet Van Imschoot
Elien Van Wonterghem
et al.
A1
Journal Article
in
ACTA NEUROPATHOLOGICA COMMUNICATIONS
2021
Mass spectrometry-based clinical proteomics : a revival
Jarne Pauwels
Kris Gevaert
Editorial material
2021
Mechanisms of congenital heart disease caused by NAA15 haploinsufficiency
Tarsha L. Ward
Warren Tai
Sarah U. Morton
Francis Impens
Petra Van Damme
Delphi Van Haver
Evy Timmerman
Gabriela Venturini
Kehan Zhang
Min Young Jang
et al.
A1
Journal Article
in
CIRCULATION RESEARCH
2021
Prune-1 drives polarization of tumor-associated macrophages (TAMs) within the lung metastatic niche in triple-negative breast cancer
V Ferrucci
F Asadzadeh
F Collina
R Siciliano
A Boccia
L Marrone
D Spano
M Carotenuto
CM Chiarolla
D De Martino
et al.
A1
Journal Article
in
ISCIENCE
2021
Robust sequential biophysical fractionation of blood plasma to study variations in the biomolecular landscape of systemically circulating extracellular vesicles across clinical conditions
Glenn Vergauwen
Joeri Tulkens
Cláudio Pinheiro
Francisco Avila Cobos
Sandor Dedeyne
Marie-Angélique De Scheerder
Linos Vandekerckhove
Francis Impens
Ilkka Miinalainen
Geert Braems
et al.
A1
Journal Article
in
JOURNAL OF EXTRACELLULAR VESICLES
2021
The bait tastes first the fish : towards a better understanding of strigolactone signalling
Anse Jacobs
Sofie Goormachtig
Kris Gevaert
Dissertation
2021
The lectin Orysata induces phosphatase-mediated and carbohydrate-independent aggregation of insect cells
Pengyu Chen
Kristof De Schutter
Jarne Pauwels
Kris Gevaert
Els Van Damme
Guy Smagghe
A1
Journal Article
in
JOURNAL OF INSECT PHYSIOLOGY
2021
The membrane-localized protein kinase MAP4K4/TOT3 regulates thermomorphogenesis
Lam Dai Vu
Xiangyu Xu
Tingting Zhu
Lixia Pan
Martijn van Zantem
Dorrit de Jong
Yaowei Wang
Tim Vanremoortele
Anna M. Locke
Brigitte Van De Cotte
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2021
Unraveling the MAX2 protein network in Arabidopsis thaliana : identification of the protein phosphatase PAPP5 as a novel MAX2 interactor
Sylwia Magdalena Struk
Carolien De Cuyper
Anse Jacobs
Lukas Braem
Alan Walton
Annick De Keyser
Stephen Depuydt
Lam Dai Vu
Ive De Smet
François-Didier Boyer
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2021
Unravelling AKT2 signalling in cancer through nanobody technology
Tijs Merckaert
Jan Gettemans
Kris Gevaert
Dissertation
2021
Use of hybrid data-dependent and -independent acquisition spectral libraries empowers dual-proteome profiling
Patrick Willems
Ursula Fels
An Staes
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2021
2020
A mass spectrometer approach to understand strigolactone induced germination of Phelipanche ramosa
Lukas Braem
Sofie Goormachtig
Kris Gevaert
Dissertation
2020
Bacterial genetic engineering by means of recombineering for reverse genetics
Ursula Fels
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2020
Chemical genetics approach identifies abnormal inflorescence meristem 1 as a putative target of a novel sulfonamide that protects catalase2-deficient Arabidopsis against photorespiratory stress
Tom van der Meer
Arno Verlee
Patrick Willems
Francis Impens
Kris Gevaert
Christa Testerink
Christian Stevens
Frank Van Breusegem
Pavel Kerchev
A1
Journal Article
in
CELLS
2020
Classification and nomenclature of metacaspases and paracaspases : no more confusion with caspases
Elena A. Minina
Jens Staal
Vanina E. Alvarez
John A. Berges
Ilana Berman-Frank
Rudi Beyaert
Kay D. Bidle
Frédéric Bornancin
Magali Casanova
Juan J. Cazzulo
et al.
A1
Journal Article
in
MOLECULAR CELL
2020
Comparative study of concatemer efficiency as an isotope-labelled internal standard for allergen quantification
M Gavage
K Van Vlierberghe
C Van Poucke
M De Loose
Kris Gevaert
M Dieu
P Renard
T Arnould
P Filee
N Gillard
A1
Journal Article
in
FOOD CHEMISTRY
2020
Dehydrin ERD14 activates glutathione transferase Phi9 in Arabidopsis thaliana under osmotic stress
Phuong N Nguyen
Maria-Armineh Tossounian
Denes S Kovacs
Tran T Thu
Benoit Stijlemans
Didier Vertommen
Jarne Pauwels
Kris Gevaert
Geert Angenon
Joris Messens
et al.
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
2020
Development and characterization of protein kinase B/AKT isoform-specific nanobodies
Tijs Merckaert
Olivier Zwaenepoel
Kris Gevaert
Jan Gettemans
A1
Journal Article
in
PLOS ONE
2020
FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes
Patricia Fernandez Calvo
Sabrina Iñigo
Gaétan Glauser
Robin Vanden Bossche
Michelle Tang
Baohua Li
Rebecca De Clercq
Astrid Nagels Durand
Dominique Eeckhout
Kris Gevaert
et al.
A1
Journal Article
in
NEW PHYTOLOGIST
2020
Food allergen detection : well-defined test materials and accurate peptide biomarkers for development of a mass spectrometry-based detection and quantification method
Kaatje Van Vlierberghe
Kris Gevaert
Christof Van Poucke
Dissertation
2020
High-resolution mass spectrometry-based selection of peanut peptide biomarkers considering food processing and market type variation
Maxime Gavage
Kaatje Van Vlierberghe
Christof Van Poucke
Marc De Loose
Kris Gevaert
Marc Dieu
Patsy Renard
Thierry Arnould
Nathalie Gillard
A1
Journal Article
in
FOOD CHEMISTRY
2020
Improved glucocorticoid receptor ligands : fantastic beasts, but how to find them?
Laura Van Moortel
Kris Gevaert
Karolien De Bosscher
A1
Journal Article
in
FRONTIERS IN ENDOCRINOLOGY
2020
Integrator restrains paraspeckles assembly by promoting isoform switching of the lncRNA NEAT1
Jasmine Barra
Gabriel S. Gaidosh
Ezra Blumenthal
Felipe Beckedorff
Mina M. Tayari
Nina Kirstein
Tobias K. Karakach
Torben Heick Jensen
Francis Impens
Kris Gevaert
et al.
A1
Journal Article
in
SCIENCE ADVANCES
2020
Listeria monocytogenes impairs SUMOylation for efficient infection (vol 464, pg 1192, 2010)
D Ribet
M Hamon
E Gouin
MA Nahori
Francis Impens
H Neyret-Kahn
Kris Gevaert
Joël Vandekerckhove
A Dejean
P Cossart
Correction
2020
MSqRob takes the missing hurdle : uniting intensity- and count-based proteomics
Ludger Goeminne
Adriaan Sticker
Lennart Martens
Kris Gevaert
Lieven Clement
A1
Journal Article
in
ANALYTICAL CHEMISTRY
2020
Method optimization for unveiling the proteome landscape of bacterial pathogens in the context of the infected host
Ursula Fels
Petra Van Damme
Kris Gevaert
Dissertation
2020
Mutations in the ubiquitin ligase adaptor LZTR1 drive human disease by dysregulating RAS ubiquitination and signaling.
Mikhail Steklov
Silvia Pandolfi
Maria Francesca Baietti
Paolo Carai
Mingzhen Zhang
Hyunbum Jang
Yanyan Cai
Eric Legius
Jan Tavernier
Kris Gevaert
et al.
C3
Conference
2020
N-glycosylation site analysis reveals sex-related differences in protein N-glycosylation in the rice brown planthopper (Nilaparvata lugens)
Freja Scheys
Els Van Damme
Jarne Pauwels
An Staes
Kris Gevaert
Guy Smagghe
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2020
N-terminal proteoforms in human disease
Annelies Bogaert
Maria Fernandez Fernandez
Kris Gevaert
A1
Journal Article
in
TRENDS IN BIOCHEMICAL SCIENCES
2020
Protein amino-termini and how to identify them
Annelies Bogaert
Kris Gevaert
A1
Journal Article
in
EXPERT REVIEW OF PROTEOMICS
2020
Regulation of protein abundance by internal and external stimuli in Arabidopsis
Shanshuo Zhu
Ive De Smet
Kris Gevaert
Dissertation
2020
Selection of universal peptide biomarkers for the detection of the allergen hazelnut in food trough a comprehensive, high resolution mass spectrometric (HRMS) based approach
Kaatje Van Vlierberghe
Maxime Gavage
Marc Dieu
Patsy Renard
Thierry Arnould
Nathalie Gillard
Katleen Coudijzer
Marc De Loose
Kris Gevaert
Christof Van Poucke
A1
Journal Article
in
FOOD CHEMISTRY
2020
Simple peptide quantification approach for MS-based proteomics quality control
Teresa Maia
An Staes
Kim Plasman
Jarne Pauwels
Katie Boucher
Andrea Argentini
Lennart Martens
Tony Montoye
Kris Gevaert
Francis Impens
A1
Journal Article
in
ACS OMEGA
2020
SnRK2 protein kinases and mRNA decapping machinery control root development and response to salt
Dorota Kawa
A Jessica Meyer
Henk L Dekker
Ahmed Abd-El-Haliem
Kris Gevaert
Eveline Van De Slijke
Justyna Maszkowska
Maria Bucholc
Grazyna Dobrowolska
Geert De Jaeger
et al.
A1
Journal Article
in
PLANT PHYSIOLOGY
2020
The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis
Stephanie Smith
Shanshuo Zhu
Lisa Joos
Ianto Roberts
Natalia Nikonorova
Lam Dai Vu
Elisabeth Stes
Hyunwoo Cho
Antoine Larrieu
Wei Xuan
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2020
Towards SERS-based multiplexed monitoring of protease activity using non-natural aromatic amino acids
Nina Turk
Hans Demol
Andre Skirtach
Roel Baets
Kris Gevaert
C1
Conference
2020
UBP12 and UBP13 negatively regulate the activity of the ubiquitin-dependent peptidases DA1, DAR1 and DAR2
Hannes Vanhaeren
Ying Chen
Mattias Vermeersch
Liesbeth De Milde
Valerie De Vleeschhauwer
Annelore Natran
Geert Persiau
Dominique Eeckhout
Geert De Jaeger
Kris Gevaert
et al.
A1
Journal Article
in
eLife
2020
Waveguide-based detection of protease activity using surface-enhanced Raman spectroscopy
Nina Turk
Ali Raza
Pieter Wuytens
Hans Demol
Michiel Van Daele
Christophe Detavernier
Andre Skirtach
Kris Gevaert
Roel Baets
C1
Conference
2020
Waveguide-based surface-enhanced Raman spectroscopy detection of protease activity using non-natural aromatic amino acids
Nina Turk
Ali Raza
Pieter Wuytens
Hans Demol
Michiel Van Daele
Christophe Detavernier
Andre Skirtach
Kris Gevaert
Roel Baets
A1
Journal Article
in
BIOMEDICAL OPTICS EXPRESS
2020
Waveguide-based surface-enhanced Raman spectroscopy for protease activity detection
Nina Turk
Roel Baets
Kris Gevaert
Dissertation
2020
2019
A well-controlled BioID design for endogenous bait proteins
Giel Vandemoortele
Delphine De Sutter
Aline Moliere
Jarne Pauwels
Kris Gevaert
Sven Eyckerman
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2019
CYP707As are effectors of karrikin and strigolactone signalling pathways in Arabidopsis thaliana and parasitic plants
Guillaume Brun
Séverine Thoiron
Lukas Braem
Jean‐Bernard Pouvreau
Grégory Monatiel
Marc‐Marie Lechat
Philippe Simier
Kris Gevaert
Sofie Goormachtig
Philippe Delavault
A1
Journal Article
in
PLANT CELL AND ENVIRONMENT
2019
Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase
Jelle Van Leene
Chao Han
Astrid Gadeyne
Dominique Eeckhout
Caroline Matthijs
Bernard Cannoot
Nancy De Winne
Geert Persiau
Eveline Van De Slijke
Brigitte Van De Cotte
et al.
A1
Journal Article
in
NATURE PLANTS
2019
Caught green-handed : methods for in vivo detection and visualization of protease activity
Álvaro Daniel Fernández Fernández
Renier AL van der Hoorn
Kris Gevaert
Frank Van Breusegem
Simon Stael
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2019
Characterization of the γ-secretase subunit interactome in Arabidopsis thaliana
Tomasz Skrzypczak
Rafal Krela
Shraddha Wadurkar
Kris Gevaert
Eveline Van De Slijke
Geert De Jaeger
Krzysztof Lesniewicz
Przemyslaw Wojtaszek
A1
Journal Article
in
ACTA PHYSIOLOGIAE PLANTARUM
2019
Comparison of free-space and waveguide-based SERS platforms
Nina Turk
Ali Raza
Pieter Wuytens
Hans Demol
Michiel Van Daele
Christophe Detavernier
Andre Skirtach
Kris Gevaert
Roel Baets
A1
Journal Article
in
NANOMATERIALS
2019
Damage on plants activates Ca2+-dependent metacaspases for release of immunomodulatory peptides
Tim Hander
Álvaro Daniel Fernández Fernández
Robert Kumpf
Patrick Willems
Hendrik Schatowitz
Debbie Rombaut
An Staes
Jonah Nolf
Robin Pottie
Panfeng Yao
et al.
A1
Journal Article
in
SCIENCE
2019
Design and visualization of second generation cyanoisoindole based fluorescent strigolactone analogs
Melissa Van Overtveldt
Lukas Braem
Sylwia Magdalena Struk
Anna Kaczmarek
François‐Didier Boyer
Rik Van Deun
Kris Gevaert
Sofie Goormachtig
Thomas Heugebaert
Christian Stevens
A1
Journal Article
in
PLANT JOURNAL
2019
Developmental plasticity at high temperature
Lam Dai Vu
Xiangyu Xu
Kris Gevaert
Ive De Smet
A1
Journal Article
in
PLANT PHYSIOLOGY
2019
Disruption of endocytosis through chemical inhibition of clathrin heavy chain function
Wim Dejonghe
Isha Sharma
Bram Denoo
Steven De Munck
Qing Lu
Kiril Mishev
Haydar Bulut
Evelien Mylle
Riet De Rycke
Mina Vasileva
et al.
A1
Journal Article
in
NATURE CHEMICAL BIOLOGY
2019
Distinct branches of the N-end rule pathway modulate the plant immune response
Jorge Vicente
Guillermina M Mendiondo
Jarne Pauwels
Victoria Pastor
Yovanny Izquierdo
Christin Naumann
Mahsa Movahedi
Daniel Rooney
Daniel J Gibbs
Katherine Smart
et al.
A1
Journal Article
in
NEW PHYTOLOGIST
2019
EXPANSIN A1-mediated radial swelling of pericycle cells positions anticlinal cell divisions during lateral root initiation
Priya Ramakrishna
Paola Ruiz Duarte
Graham A Rance
Martin Schubert
Vera Vordermaier
Lam Dai Vu
Evan Murphy
Amaya Vilches Barro
Kamal Swarup
Kamaljit Moirangthem
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2019
Exploring the protein-protein interaction landscape in plants
Sylwia Magdalena Struk
Anse Jacobs
Elena Sánchez Martín-Fontecha
Kris Gevaert
Pilar Cubas
Sofie Goormachtig
A1
Journal Article
in
PLANT CELL AND ENVIRONMENT
2019
Extracellular peptide Kratos restricts cell death during vascular development and stress in Arabidopsis
Sacha Escamez
Simon Stael
Julia P Vainonen
Patrick Willems
Huiting Jin
Sachie Kimura
Frank Van Breusegem
Kris Gevaert
Michael Wrzaczek
Hannele Tuominen
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2019
Feeling the heat : searching for plant thermosensors
Lam Dai Vu
Kris Gevaert
Ive De Smet
A1
Journal Article
in
TRENDS IN PLANT SCIENCE
2019
High-throughput proteome analysis using 50 cm long micro pillar arraycolumns (µPAC)
Jeff Op De Beeck
Geert Van Raemdonck
Paul Jacobs
Gert Desmet
Wim De Malsche
Francis Impens
Kris Gevaert
C3
Conference
2019
Hydrogen plasma cleaning of gold plasmonic nanostructures for better reproducibility of SERS spectra
Nina Turk
Andre Skirtach
Kris Gevaert
Roel Baets
C1
Conference
2019
Look closely, the beautiful may be small : precursor-derived peptides in plants
Vilde Olsson
Lisa Joos
Shanshuo Zhu
Kris Gevaert
Melinka A Butenko
Ive De Smet
A1
Journal Article
in
Annual Review of Plant Biology
2019
Mining for protein S-sulfenylation in Arabidopsis uncovers redox-sensitive sites
Jingjing Huang
Patrick Willems
Bo Wei
Caiping Tian
Renan B Ferreira
Nandita Bodra
Santiago Agustín Martínez Gache
Khadija Wahni
Keke Liu
Didier Vertommen
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2019
Phosphorylation mediates high temperature signalling in plants
Lam Dai Vu
Ive De Smet
Kris Gevaert
Dissertation
2019
Pick a tag and explore the functions of your pet protein
Giel Vandemoortele
Sven Eyckerman
Kris Gevaert
A1
Journal Article
in
TRENDS IN BIOTECHNOLOGY
2019
Plant proteases and programmed cell death
Simon Stael
Frank Van Breusegem
Kris Gevaert
Moritz Nowack
Editorial material
2019
Pollens destroy respiratory epithelial cell anchors and drive alphaherpesvirus infection
Jolien Van Cleemput
Katrien Poelaert
Kathlyn Laval
Francis Impens
Wim Van Den Broeck
Kris Gevaert
Hans Nauwynck
A1
Journal Article
in
SCIENTIFIC REPORTS
2019
Salmonella Typhi, Paratyphi A, Enteritidis and Typhimurium core proteomes reveal differentially expressed proteins linked to the cell surface and pathogenicity
Sara Saleh
Sandra Van Puyvelde
An Staes
Evy Timmerman
Barbara Barbé
Jan Jacobs
Kris Gevaert
Stijn Deborggraeve
A1
Journal Article
in
PLOS NEGLECTED TROPICAL DISEASES
2019
Selection of egg peptide biomarkers in processed food products by high resolution mass spectrometry
M Gavage
Kaatje Van Vlierberghe
C Van Poucke
M De Loose
Kris Gevaert
M Dieu
P Renard
T Arnould
N Gillard
A1
Journal Article
in
JOURNAL OF CHROMATOGRAPHY A
2019
Statistical methods for differential proteomics at peptide and protein level
Ludger Goeminne
Lieven Clement
Kris Gevaert
Dissertation
2019
Targeted proteomics for studying pathogenic bacteria
Sara Saleh
An Staes
Stijn Deborggraeve
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2019
The Plant PTM Viewer, a central resource for exploring plant protein modifications
Patrick Willems
Alison Horne
Thomas Van Parys
Sofie Goormachtig
Ive De Smet
Alexander Botzki
Frank Van Breusegem
Kris Gevaert
A1
Journal Article
in
PLANT JOURNAL
2019
The generation and use of recombinant extracellular vesicles as biological reference material
Edward Geeurickx
Joeri Tulkens
Bert Dhondt
Jan Van Deun
Lien Lippens
Glenn Vergauwen
Elisa Heyrman
Delphine De Sutter
Kris Gevaert
Francis Impens
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2019
Towards a genome engineering toolbox for proteomics
Giel Vandemoortele
Sven Eyckerman
Kris Gevaert
Dissertation
2019
2018
A protein-protein interaction map of the TNF-induced NF-κB signal transduction pathway
Emmy Van Quickelberghe
Delphine De Sutter
Geert van Loo
Sven Eyckerman
Kris Gevaert
A1
Journal Article
in
SCIENTIFIC DATA
2018
Challenges in the structural-functional characterization of multidomain, partially disordered proteins CBP and p300 : preparing native proteins and developing nanobody tools
Angela Bekesi
Sara Abdellaoui
Natalie Holroyd
Wouter Van Delm
Els Pardon
Jarne Pauwels
Kris Gevaert
Jan Steyaert
Stefaan Derveaux
Antoni Borysik
et al.
A1
Journal Article
in
Methods in Enzymology
2018
Chronic kidney disease circulating calciprotein particles and extracellular vesicles promote vascular calcification : a role for GRP (Gla-rich protein)
Carla SB Viegas
Lúcia Santos
Anjos L Macedo
António A Matos
Ana P Silva
Pedro L Neves
An Staes
Kris Gevaert
Rute Morais
Cees Vermeer
et al.
A1
Journal Article
in
ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY
2018
DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis
Amr Nassrallah
Martin Rougée
Clara Bourbousse
Stephanie Drevensek
Sandra Fonseca
Elisa Iniesto
Ouardia Ait-Mohamed
Anne-Flore Deton-Cabanillas
Gerald Zabulon
Ikhlak Ahmed
et al.
A1
Journal Article
in
ELIFE
2018
Disulfide bond formation protects Arabidopsis thaliana glutathione transferase tau 23 from oxidative damage
Maria-Armineh Tossounian
Inge Van Molle
Khadija Wahni
Silke Jacques
Kris Gevaert
Frank Van Breusegem
Didier Vertommen
David Young
Leonardo Astolfi Rosado
Joris Messens
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
2018
Early mannitol-triggered changes in the Arabidopsis leaf (phospho) proteome reveal growth regulators
Natalia Nikonorova
Lisa Van den Broeck
Shanshuo Zhu
Brigitte Van De Cotte
Marieke Dubois
Kris Gevaert
Dirk Inzé
Ive De Smet
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2018
Evolutionarily conserved and species-specific glycoproteins in the N-glycoproteomes of diverse insect species
Freja Scheys
Els Van Damme
Kristof De Schutter
An Staes
Kris Gevaert
Guy Smagghe
A1
Journal Article
in
INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY
2018
Experimental design and data-analysis in label-free quantitative LC/MS proteomics : a tutorial with MSqRob
Ludger Goeminne
Kris Gevaert
Lieven Clement
A1
Journal Article
in
JOURNAL OF PROTEOMICS
2018
FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination
Joiselle Blanche Fernandes
Marine Duhamel
Mathilde Seguéla-Arnaud
Nicole Froger
Chloé Girard
Sandrine Choinard
Victor Solier
Nancy De Winne
Geert De Jaeger
Kris Gevaert
et al.
A1
Journal Article
in
PLOS GENETICS
2018
GSyellow, a multifaceted tag for functional protein analysis in monocot and dicot plants
Nienke Besbrugge
Jelle Van Leene
Dominique Eeckhout
Bernard Cannoot
Shubhada Rajabhau Kulkarni
Nancy De Winne
Geert Persiau
Eveline Van De Slijke
Michiel Bontinck
Stijn Aesaert
et al.
A1
Journal Article
in
PLANT PHYSIOLOGY
2018
Identification of immune-responsive gene 1 (IRG1) as a target of A20
Emmy Van Quickelberghe
Arne Martens
Ludger Goeminne
Lieven Clement
Geert van Loo
Kris Gevaert
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2018
Impairment of angiogenesis by fatty acid synthase inhibition involves mTOR malonylation
Ulrike Bruning
Francisco Morales-Rodriguez
Joanna Kalucka
Jermaine Goveia
Federico Taverna
Karla CS Queiroz
Charlotte Dubois
Anna Rita Cantelmo
Rongyuan Chen
Stefan Loroch
et al.
A1
Journal Article
in
CELL METABOLISM
2018
Mutations in LZTR1 drive human disease by dysregulating RAS ubiquitination
M Steklov
S Pandolfi
MF Baietti
A Batiuk
P Carai
P Najm
M Zhang
H Jang
F Renzi
Y Cai
et al.
A1
Journal Article
in
SCIENCE
2018
N-terminal acetylation levels are maintained during acetyl-CoA deficiency in Saccharomyces cerevisiae
Sylvia Varland
Henriette Aksnes
Fedor Kryuchkov
Francis Impens
Delphi Van Haver
Veronique Jonckheere
Mathias Ziegler
Kris Gevaert
Petra Van Damme
Thomas Arnesen
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2018
NAA80 is actin’s N-terminal acetyltransferase and regulates cytoskeleton assembly and cell motility
Adrian Drazic
Henriette Aksnes
Michaël Marie
Malgorzata Boczkowska
Sylvia Varland
Evy Timmerman
Håvard Foyn
Nina Glomnes
Grzegorz Rebowski
Francis Impens
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2018
Organellar omics : a reviving strategy to untangle the biomolecular complexity of the cell
Arun Kumar Tharkeshwar Raghunath
Kris Gevaert
Wim Mannaerts
A1
Journal Article
in
PROTEOMICS
2018
Peanut stunt virus and its satellite RNA trigger changes in phosphorylation in N-benthamiana infected plants at the early stage of the infection
Barbara Wrzesinska
Lam Dai Vu
Kris Gevaert
Ive De Smet
Aleksandra Obrepalska-Steplowska
A1
Journal Article
in
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
2018
Plant redox biology with an -omics perspective
Patrick Willems
Frank Van Breusegem
Kris Gevaert
Dissertation
2018
Protein language : post-translational modifications talking to each other
Lam Dai Vu
Kris Gevaert
Ive De Smet
A1
Journal Article
in
TRENDS IN PLANT SCIENCE
2018
Proteome analysis of Arabidopsis roots
Natalia Nikonorova
Lam Dai Vu
Elisabeth Stes
Kris Gevaert
Ive De Smet
Bookchapter
in
Root development : methods and protocols
2018
Quantitative proteomics and systems analysis of cultured H9C2 cardiomyoblasts during differentiation over time supports a ‘function follows form’ model of differentiation
Cynthia Kankeu
Kylie Clarke
Delphi Van Haver
Kris Gevaert
Francis Impens
Anna Dittrich
H Llewelyn Roderick
Egle Passante
Heinrich J Huber
A1
Journal Article
in
MOLECULAR OMICS
2018
Quantitative tandem affinity purification, an effective tool to investigate protein complex composition in plant hormone signaling : strigolactones in the spotlight
Sylwia Magdalena Struk
Lukas Braem
Alan Walton
Annick De Keyser
François-Didier Boyer
Geert Persiau
Geert De Jaeger
Kris Gevaert
Sofie Goormachtig
A1
Journal Article
in
FRONTIERS IN PLANT SCIENCE
2018
RIPK4 activity in keratinocytes is controlled by the SCFβ-TrCP ubiquitin ligase to maintain cortical actin organization
Giel Tanghe
Corinne Urwyler
Philippe De Groote
Emmanuel Dejardin
Pieter-Jan De Bock
Kris Gevaert
Peter Vandenabeele
Wim Declercq
A1
Journal Article
in
CELLULAR AND MOLECULAR LIFE SCIENCES
2018
Recombinant extracellular vesicles : biological reference material to standardize extracellular vesicle research
Edward Geeurickx
Elisa Heyrman
Jan Van Deun
Lien Lippens
Joeri Tulkens
Bert Dhondt
Glenn Vergauwen
Kris Gevaert
Francis Impens
Ilkka Miinalainen
et al.
C3
Conference
2018
Recombinant extracellular vesicles : biological reference material to standardize extracellular vesicle research
Edward Geeurickx
Elisa Heyrman
Jan Van Deun
Lien Lippens
Joeri Tulkens
Bert Dhondt
Glenn Vergauwen
Kris Gevaert
Francis Impens
Ilkka Miinalainen
et al.
C3
Conference
2018
Seed germination in parasitic plants : what insights can we expect from strigolactone research?
Guillaume Brun
Lukas Braem
Severine Thoiron
Kris Gevaert
Sofie Goormachtig
Philippe Delavault
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2018
Studying the double-faced A20 protein by contemporary proteomics
Emmy Van Quickelberghe
Kris Gevaert
Geert van Loo
Dissertation
2018
Synaptogyrin-3 mediates presynaptic dysfunction induced by Tau
Joseph McInnes
Keimpe Wierda
An Snellinx
Laura Bounti
Yu-Chun Wang
Ilie-Cosmin Stancu
Nuno Apóstolo
Kris Gevaert
Ilse Dewachter
Tara L Spires-Jones
et al.
A1
Journal Article
in
NEURON
2018
Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated interconversion of phosphoforms
Lam Dai Vu
Tingting Zhu
Inge Verstraeten
Brigitte Van De Cotte
Kris Gevaert
Ive De Smet
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2018
The autophagy receptor SQSTM1/p62 mediates anti-inflammatory actions of the selective NR3C1/glucocorticoid receptor modulator compound A (CpdA) in macrophages
Viacheslav Mylka
Julie Deckers
Dariusz Ratman
Lode De Cauwer
Jonathan Thommis
Riet De Rycke
Francis Impens
Claude Libert
Jan Tavernier
Wim Vanden Berghe
et al.
A1
Journal Article
in
AUTOPHAGY
2018
Towards SERS-based on-chip detection of protease activity using nanoplasmonic slot waveguides
Nina Turk
Ali Raza
Pieter Wuytens
Hans Demol
Andre Skirtach
Kris Gevaert
Roel Baets
C1
Conference
2018
Towards mulitplexed SERS-based on-chip detection on protease activity
Nina Turk
Pieter Wuytens
Hans Demol
Kris Gevaert
Andre Skirtach
Mohamed Lamkanfi
Roel Baets
C3
Conference
2018
2017
A leap over the hurdle in label-free quantitative proteomics
Ludger Goeminne
Kris Gevaert
Lieven Clement
C3
Conference
2017
Analyzing repeated measures designs in label-free proteomics with MSqRob (MCP 2016 15(2):657-68.)
Lieven Clement
Ludger Goeminne
Emmy Van Quickelberghe
Kris Gevaert
C3
Conference
2017
Analyzing trapped protein complexes by Virotrap and SFINX
Kevin Titeca
Emmy Van Quickelberghe
Noortje Samyn
Delphine De Sutter
Annick Verhee
Kris Gevaert
Jan Tavernier
Sven Eyckerman
A1
Journal Article
in
NATURE PROTOCOLS
2017
Confounding factors in extracellular vesicle ultrafiltration and protein analysis
Glenn Vergauwen
Bert Dhondt
Jan Van Deun
Evy Timmerman
Kris Gevaert
Geert Braems
Rudy Van den Broecke
Veronique Cocquyt
Hannelore Denys
Olivier De Wever
et al.
C3
Conference
2017
Confounding factors of ultrafiltration and protein analysis in extracellular vesicle research
Glenn Vergauwen
Bert Dhondt
Jan Van Deun
Eva De Smedt
Geert Berx
Evy Timmerman
Kris Gevaert
Ilkka Miinalainen
Veronique Cocquyt
Geert Braems
et al.
A1
Journal Article
in
SCIENTIFIC REPORTS
2017
Deregulation of focal adhesion formation and cytoskeletal tension due to loss of A-type lamins
Tobias Corne
Tom Sieprath
Jonathan Vandenbussche
Danahe Mohammed
Mariska te Lindert
Kris Gevaert
Sylvain Gabriele
Katarina Wolf
Winnok De Vos
A1
Journal Article
in
CELL ADHESION & MIGRATION
2017
Drugging the catalytically inactive state of RET kinase in RET-rearranged tumors
Dennis Plenker
Maximilian Riedel
Johannes Brägelmann
Marcel A Dammert
Rakhee Chauhan
Phillip P Knowles
Carina Lorenz
Marina Keul
Mike Bührmann
Oliver Pagel
et al.
A1
Journal Article
in
SCIENCE TRANSLATIONAL MEDICINE
2017
Ectopic application of the repressive histone modification H3K9me2 establishes post-zygotic reproductive isolation in Arabidopsis thaliana
Hua Jiang
Jordi Moreno-Romero
Juan Santos-Gonzalez
Geert De Jaeger
Kris Gevaert
Eveline Van De Slijke
Claudia Kohler
A1
Journal Article
in
GENES & DEVELOPMENT
2017
Expanding the interactome of TES by exploiting TES modules with different subcellular localizations
Stefano Sala
Marleen Van Troys
Sandrine Medves
Marie Catillon
Evy Timmerman
An Staes
Elisabeth Schaffner-Reckinger
Kris Gevaert
Christophe Ampe
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2017
Gold nanodome SERS platform for label-free detection of protease activity
Pieter Wuytens
Hans Demol
Nina Turk
Kris Gevaert
Andre Skirtach
Mohamed Lamkanfi
Roel Baets
A1
Journal Article
in
FARADAY DISCUSSIONS
2017
Identification of carboxypeptidase substrates by C-terminal COFRADIC
Sebastian Tanco
Francesc Xavier Aviles
Kris Gevaert
Julia Lorenzo
Petra Van Damme
Bookchapter
in
Protein terminal profiling : methods and protocols
2017
Identification of confounding factors of EV isolation and protein analysis
Glenn Vergauwen
Bert Dhondt
Jan Van Deun
Evy Timmerman
Kris Gevaert
Veronique Cocquyt
Geert Braems
Rudy Van den Broecke
Hannelore Denys
Olivier De Wever
et al.
C3
Conference
2017
Linking functions : an additional role for an intrinsically disordered linker domain in the transcriptional coactivator CBP
Sara Contreras-Martos
Alessandro Piai
Simone Kosol
Mihaly Varadi
Angela Bekesi
Pierre Lebrun
Alexander N Volkov
Kris Gevaert
Roberta Pierattelli
Isabella C Felli
et al.
A1
Journal Article
in
SCIENTIFIC REPORTS
2017
MSqRob : analysis of label-free proteomics data in an R/Shiny environment
Ludger Goeminne
Kris Gevaert
Lieven Clement
C3
Conference
2017
MSqRob: analysis of label-free proteomics data in an R/Shiny environment
Ludger Goeminne
Emmy Van Quickelberghe
Kris Gevaert
Lieven Clement
C3
Conference
2017
N-terminal proteomics assisted profiling of the unexplored translation initiation landscape in Arabidopsis thaliana
Patrick Willems
Elvis Ndah
Veronique Jonckheere
Simon Stael
Adriaan Sticker
Lennart Martens
Frank Van Breusegem
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2017
Noncoding after all : biases in proteomics data do not explain observed absence of lncRNA translation products
Kenneth Verheggen
Pieter-Jan Volders
Pieter Mestdagh
Gerben Menschaert
Petra Van Damme
Kris Gevaert
Lennart Martens
Jo Vandesompele
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2017
Novel insights into the choroid plexus' response to systemic inflammation and Alzheimer's disease
Sriram Balusu
Roosmarijn Vandenbroucke
Claude Libert
Kris Gevaert
Dissertation
2017
Protease substrate profiling by N-terminal COFRADIC
An Staes
Petra Van Damme
Evy Timmerman
Bart Ruttens
Elisabeth Stes
Kris Gevaert
Francis Impens
Bookchapter
in
Protein terminal profiling : methods and protocols
2017
Proteogenomics in aid of host-pathogen interaction studies : a bacterial perspective
Ursula Fels
Kris Gevaert
Petra Van Damme
A2
Journal Article
in
PROTEOMES
2017
Proteome profiling of wheat shoots from different cultivars
Lam Dai Vu
Inge Verstraeten
Elisabeth Stes
Michiel Van Bel
Frederik Coppens
Kris Gevaert
Ive De Smet
A1
Journal Article
in
FRONTIERS IN PLANT SCIENCE
2017
SOX11 acts as part of the MYCN-WEE1 regulatory protein complex implicated in neuroblastoma
Bieke Decaesteker
Sara De Brouwer
Fanny De Vloed
Geertrui Denecker
Suzanne Vanhauwaert
Jolien De Wyn
Genevieve Laureys
Björn Menten
Pauline Depuydt
Jo Vandorpe
et al.
C3
Conference
2017
SOX11 acts as part of the MYCN-WEE1 regulatory protein complex implicated in neuroblastoma
Bieke Decaesteker
Sara De Brouwer
Fanny De Vloed
Geertrui Denecker
Suzanne Vanhauwaert
Jolien De Wyn
Genevieve Laureys
Björn Menten
Pauline Depuydt
Patrick Reynolds
et al.
C3
Conference
2017
Selective glucocorticoid receptor properties of GSK866 analogs with cysteine reactive warheads
Chandra S Chirumamilla
Ajay Palagani
Balu Kamaraj
Ken Declerck
Marinus WC Verbeek
Oksana Ryabtsova
Karolien De Bosscher
Nadia Bougarne
Bart Ruttens
Kris Gevaert
et al.
A1
Journal Article
in
FRONTIERS IN IMMUNOLOGY
2017
Strigolactones, karrikins and beyond
Carolien De Cuyper
Sylwia Magdalena Struk
Lukas Braem
Kris Gevaert
Geert De Jaeger
Sofie Goormachtig
A1
Journal Article
in
PLANT CELL AND ENVIRONMENT
2017
The mTOR and PP2A pathways regulate PHD2 phosphorylation to fine-tune HIF1α levels and colorectal cancer cell survival under hypoxia
Giusy Di Conza
Sarah Trusso Cafarello
Stefan Loroch
Daniela Mennerich
Sofie Deschoemaeker
Mario Di Matteo
Manuel Ehling
Kris Gevaert
Hans Prenen
Rene Peiman Zahedi
et al.
A1
Journal Article
in
CELL REPORTS
2017
The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis
Andrés Ritter Traub
Sabrina Iñigo
Patricia Fernandez Calvo
Ken Heyndrickx
Stijn Dhondt
Hua Shi
Liesbeth De Milde
Robin Vanden Bossche
Rebecca De Clercq
Dominique Eeckhout
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2017
2016
A role for human N-alpha acetyltransferase 30 (Naa30) in maintaining mitochondrial integrity
Petra Van Damme
Thomas V Kalvik
Kristian W Starheim
Veronique Jonckheere
Line M Myklebust
Gerben Menschaert
Jan Erik Varhaug
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2016
ADAM30 downregulates APP-linked defects through cathepsin D activation in Alzheimer's disease
Florent Letronne
Geoffroy Laumet
Anne-Marie Ayral
Julien Chapuis
Florie Demiautte
Mathias Laga
Michel E Vandenberghe
Nicolas Malmanche
Florence Leroux
Fanny Eysert
et al.
A1
Journal Article
in
EBIOMEDICINE
2016
Alternative translation initiation unraveled by N-terminomics and ribosome profiling
Daria Fijalkowska
Petra Van Damme
Kris Gevaert
Dissertation
2016
An extra dimension in protein tagging by quantifying universal proteotypic peptides using targeted proteomics
Giel Vandemoortele
An Staes
Giulia Gonnelli
Noortje Samyn
Delphine De Sutter
Elien Vandermarliere
Evy Timmerman
Kris Gevaert
Lennart Martens
Sven Eyckerman
A1
Journal Article
in
SCIENTIFIC REPORTS
2016
An omics strategy to unravel the role of the β2-adrenergic receptor in inflammation
Sarah Gerlo
Guy Laureys
Krzysztof Kolmus
Sven Eyckerman
Kris Gevaert
Irma Lemmens
Jan Tavernier
C3
Conference
2016
CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis
Ianto Roberts
Stephanie Smith
Elisabeth Stes
Bert De Rybel
An Staes
Brigitte Van De Cotte
Maria Njo
Lise Dedeyne
Hans Demol
Julien Lavenus
et al.
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2016
Construction and analysis of a human testis/sperm-enriched interaction network : unraveling the PPP1CC2 interactome
Joana Vieira Silva
Sooyeon Yoon
Pieter-Jan De Bock
Alexander V Goltsev
Kris Gevaert
José Fernando F Mendes
Margarida Fardilha
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
2016
De novo design of a biologically active amyloid
Rodrigo Gallardo
Meine Ramakers
Frederik De Smet
Filip Claes
Ladan Khodaparast
Laleh Khodaparast
José R Couceiro
Tobias Langenberg
Maxime Siemons
Sofie Nyström
et al.
A1
Journal Article
in
SCIENCE
2016
Diagonal chromatography to study plant protein modifications
Alan Walton
Styliani Tsiatsiani
Silke Jacques
Elisabeth Stes
Joris Messens
Frank Van Breusegem
Sofie Goormachtig
Kris Gevaert
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
2016
FYVE1/FREE1 interacts with the PYL4 ABA receptor and mediates its delivery to the vacuolar degradation pathway
Borja Belda-Palazon
Lesia Rodriguez
Maria A Fernandez
Mari-Cruz Castillo
Erin M Anderson
Caiji Gao
Miguel Gonzalez-Guzman
Marta Peirats-Llobet
Qiong Zhao
Nancy De Winne
et al.
A1
Journal Article
in
PLANT CELL
2016
Functional characterization of inflammatory caspases
Daniel Jiménez Fernandez
Mohamed Lamkanfi
Kris Gevaert
Dissertation
2016
Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development
Jelle Van Leene
Jonas Blomme
Shubhada Rajabhau Kulkarni
Bernard Cannoot
Nancy De Winne
Dominique Eeckhout
Geert Persiau
Eveline Van De Slijke
Leen Vercruysse
Robin Vanden Bossche
et al.
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2016
Genetic predisposition for beta cell fragility underlies type 1 and type 2 diabetes
James Dooley
Lei Tian
Susann Schonefeldt
Viviane Delghingaro-Augusto
Josselyn E Garcia-Perez
Emanuela Pasciuto
Daniele Di Marino
Edward J Carr
Nikolay Oskolkov
Valeriya Lyssenko
et al.
A1
Journal Article
in
NATURE GENETICS
2016
Glutaredoxin GRXS17 associates with the cytosolic iron-sulfur cluster assembly pathway
Sabrina Iñigo
Astrid Nagels Durand
Andrés Ritter Traub
Sabine Le Gall
Martin Termathe
Roland Klassen
Takayuki Tohge
Barbara De Coninck
Jelle Van Leene
Rebecca De Clercq
et al.
A1
Journal Article
in
PLANT PHYSIOLOGY
2016
HIV-1 Vpr N-terminal tagging affects alternative splicing of the viral genome
Ann Baeyens
Evelien Naessens
Anouk Van Nuffel
Karin Weening
Anne-Marie Reilly
Eva Claeys
Wim Trypsteen
Linos Vandekerckhove
Sven Eyckerman
Kris Gevaert
et al.
A1
Journal Article
in
SCIENTIFIC REPORTS
2016
Identification of a novel mechanism of blood-brain communication during peripheral inflammation via choroid plexus-derived extracellular vesicles
Sriram Balusu
Elien Van Wonterghem
Riet De Rycke
Koen Raemdonck
Stephan Stremersch
Kris Gevaert
Marjana Brkic
Delphine Demeestere
Valerie Vanhooren
An Hendrix
et al.
A1
Journal Article
in
EMBO MOLECULAR MEDICINE
2016
Intelligent mixing of proteomes for elimination of false positives in affinity purification-mass spectrometry
Sven Eyckerman
Francis Impens
Emmy Van Quickelberghe
Noortje Samyn
Giel Vandemoortele
Delphine De Sutter
Jan Tavernier
Kris Gevaert
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2016
Isolation of protein complexes from the model legume Medicago truncatula by tandem affinity purification in hairy root cultures
Jonas Goossens
Nathan De Geyter
Alan Walton
Dominique Eeckhout
Jan Mertens
Jacob Pollier
Jennifer Liliana Fiallos Jurado
Annick De Keyser
Rebecca De Clercq
Jelle Van Leene
et al.
A1
Journal Article
in
PLANT JOURNAL
2016
It's time for some 'site'-seeing: novel tools to monitor the ubiquitin landscape in Arabidopsis thaliana
Alan Walton
Elisabeth Stes
Nicolas Cybulski
Michiel Van Bel
Sabrina Iñigo
Astrid Nagels Durand
Evy Timmerman
Jefri Heyman
Laurens Pauwels
Lieven De Veylder
et al.
A1
Journal Article
in
PLANT CELL
2016
Melanoma addiction to the long non-coding RNA SAMMSON
Eleonora Leucci
Roberto Vendramin
Marco Spinazzi
Patrick Laurette
Mark Fiers
Jasper Wouters
Enrico Radaelli
Sven Eyckerman
Carina Leonelli
Katrien Vanderheyden
et al.
A1
Journal Article
in
NATURE
2016
PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root
Kun Yue
Priyanka Sandal
Elisabeth L. Williams
Evan Murphy
Elisabeth Stes
Natalia Nikonorova
Priya Ramakrishna
Nathan Czyzewicz
Laura Montero Morales
Robert Kumpf
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2016
Peptide-level robust ridge regression improves estimation, sensitivity, and specificity in data-dependent quantitative label-free shotgun proteomics
Ludger Goeminne
Kris Gevaert
Lieven Clement
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2016
Positional proteomics reveals differences in N-terminal proteoform stability
Daria Fijalkowska
Elvis Ndah
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR SYSTEMS BIOLOGY
2016
Protein aggregation as an antibiotic design strategy
Natalia G Bednarska
Johan van Eldere
Rodrigo Gallardo
Ashok Ganesan
Meine Ramakers
Isabel Vogel
Pieter Baatsen
An Staes
Marc Goethals
Per Hammarström
et al.
A1
Journal Article
in
MOLECULAR MICROBIOLOGY
2016
Proteomics in the genome engineering era
Giel Vandemoortele
Kris Gevaert
Sven Eyckerman
A1
Journal Article
in
PROTEOMICS
2016
Resolution of protein structure by mass spectrometry
Elien Vandermarliere
Elisabeth Stes
Kris Gevaert
Lennart Martens
A1
Journal Article
in
MASS SPECTROMETRY REVIEWS
2016
SFINX : straightforward filtering index for affinity purification mass spectrometry data analysis
Kevin Titeca
Pieter Meysman
Kris Gevaert
Jan Tavernier
Kris Laukens
Lennart Martens
Sven Eyckerman
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2016
Strigolactone signaling through the eye of the mass spectrometer
Alan Walton
Sofie Goormachtig
Kris Gevaert
Dissertation
2016
The Arabidopsis iron-sulfur protein GRXS17 is a target of the ubiquitin E3 ligases RGLG3 and RGLG4
Astrid Nagels Durand
Sabrina Iñigo
Andrés Ritter Traub
Elisa Iniesto
Rebecca De Clercq
An Staes
Jelle Van Leene
Vicente Rubio
Kris Gevaert
Geert De Jaeger
et al.
A1
Journal Article
in
PLANT AND CELL PHYSIOLOGY
2016
The ROS wheel: refining ROS transcriptional footprints
Patrick Willems
Amna M'Hamdi
Simon Stael
Veronique Storme
Pavel Kerchev
Graham Noctor
Kris Gevaert
Frank Van Breusegem
A1
Journal Article
in
PLANT PHYSIOLOGY
2016
The growing story of (ARABIDOPSIS) CRINKLY 4
Nathan Czyzewicz
Natalia Nikonorova
Matthew R Meyer
Priyanka Sandal
Shweta Shah
Lam Dai Vu
Kris Gevaert
A Gururaj Rao
Ive De Smet
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2016
The response of the root proteome to the synthetic strigolactone GR24 in Arabidopsis
Alan Walton
Elisabeth Stes
Geert Goeminne
Lukas Braem
Marnik Vuylsteke
Cedrick Matthys
Carolien De Cuyper
An Staes
Jonathan Vandenbussche
François-Didier Boyer
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2016
The whats, the wheres and the hows of strigolactone action in the roots
Cedrick Matthys
Alan Walton
Sylwia Magdalena Struk
Elisabeth Stes
François-Didier Boyer
Kris Gevaert
Sofie Goormachtig
A1
Journal Article
in
PLANTA
2016
Transferring an optimized TAP-toolbox for the isolation of protein complexes to a portfolio of rice tissues
Maarten Dedecker
Jelle Van Leene
Nancy De Winne
Dominique Eeckhout
Geert Persiau
Eveline Van De Slijke
Bernard Cannoot
Leen Vercruysse
Lies Dumoulin
Nathalie Wojsznis
et al.
A1
Journal Article
in
PLANT MOLECULAR BIOLOGY
2016
Trapping mammalian protein complexes in viral particles
Sven Eyckerman
Kevin Titeca
Emmy Van Quickelberghe
Eva Cloots
Annick Verhee
Noortje Samyn
Leentje De Ceuninck
Evy Timmerman
Delphine De Sutter
Sam Lievens
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2016
Up-to-date workflow for plant (phospho)proteomics identifies differential drought-responsive phosphorylation events in maize leaves
Lam Dai Vu
Elisabeth Stes
Michiel Van Bel
Hilde Nelissen
Davy Maddelein
Dirk Inzé
Frederik Coppens
Lennart Martens
Kris Gevaert
Ive De Smet
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2016
Xilmass: a new approach toward the identification of cross-linked peptides
Sule Yilmaz-Rumpf
Friedel Drepper
Niels Hulstaert
Maša Černič
Kris Gevaert
Anastassios Economou
Bettina Warscheid
Lennart Martens
Elien Vandermarliere
A1
Journal Article
in
ANALYTICAL CHEMISTRY
2016
Zebrafish collagen type I: molecular and biochemical characterization of the major structural protein in bone and skin
Charlotte Gistelinck
R Gioia
A Gagliardi
F Tonelli
L Marchese
L Bianchi
C Landi
L Bini
Ann Huysseune
Paul Witten
et al.
A1
Journal Article
in
SCIENTIFIC REPORTS
2016
2015
A multi-angled view on oxidative stress in A. thaliana leaves : filling the gaps
Silke Jacques
Frank Van Breusegem
Kris Gevaert
Dissertation
2015
A phylogenetic approach to study the origin and evolution of the CRINKLY4 family
Natalia Nikonorova
Lam Dai Vu
Nathan Czyzewicz
Kris Gevaert
Ive De Smet
A1
Journal Article
in
FRONTIERS IN PLANT SCIENCE
2015
A repressor protein complex regulates leaf growth in Arabidopsis
Nathalie Gonzalez Sanchez
Laurens Pauwels
Alexandra Baekelandt
Liesbeth De Milde
Jelle Van Leene
Nienke Besbrugge
Ken Heyndrickx
Amparo Cuéllar Pérez
Astrid Nagels Durand
Rebecca De Clercq
et al.
A1
Journal Article
in
PLANT CELL
2015
An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes
Jelle Van Leene
Dominique Eeckhout
Bernard Cannoot
Nancy De Winne
Geert Persiau
Eveline Van De Slijke
Leen Vercruysse
Maarten Dedecker
Aurine Verkest
Klaas Vandepoele
et al.
A1
Journal Article
in
NATURE PROTOCOLS
2015
An organellar Nα-acetyltransferase, Naa60, acetylates cytosolic N termini of transmembrane proteins and maintains Golgi integrity
Henriette Aksnes
Petra Van Damme
Marianne Goris
Kristian K Starheim
Michaël Marie
Svein Isungset Støve
Camilla Hoel
Thomas Vikestad Kalvik
Kristine Hole
Nina Glomnes
et al.
A1
Journal Article
in
CELL REPORTS
2015
Biochemical and cellular analysis of Ogden syndrome reveals downstream Nt-acetylation defects
Line M Myklebust
Petra Van Damme
Svein I Støve
Max J Dörfel
Angèle Abboud
Thomas V Kalvik
Cedric Grauffel
Veronique Jonckheere
Yiyang Wu
Jeffrey Swensen
et al.
A1
Journal Article
in
HUMAN MOLECULAR GENETICS
2015
C-terminomics screen for natural substrates of cytosolic carboxypeptidase 1 reveals processing of acidic protein C termini
Sebastian Tanco
Olivia Tort
Hans Demol
Francesc Xavier Aviles
Kris Gevaert
Petra Van Damme
Julia Lorenzo
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2015
C-terminomics: targeted analysis of natural and posttranslationally modified protein and peptide C-termini
Sebastian Tanco
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
PROTEOMICS
2015
Cysteines under ROS attack in plants : a proteomics view
Mosammat Salma Akter
Jingjing Huang
Cezary Waszczak
Silke Jacques
Kris Gevaert
Frank Van Breusegem
Joris Messens
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2015
DYn-2 based identification of Arabidopsis sulfenomes
Mosammat Salma Akter
Jingjing Huang
Nandita Bodra
Barbara De Smet
Khadija Wahni
Debbie Rombaut
Jarne Pauwels
Kris Gevaert
Kate Carroll
Frank Van Breusegem
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2015
Dynamic changes in ANGUSTIFOLIA3 complex composition reveal a growth regulatory mechanism in the maize leaf
Hilde Nelissen
Dominique Eeckhout
Kirin Demuynck
Geert Persiau
Alan Walton
Michiel Van Bel
Marieke Vervoort
Jasper Candaele
Jolien De Block
Stijn Aesaert
et al.
A1
Journal Article
in
PLANT CELL
2015
Exploring lncRNAs in cancer : tools for discovery and characterization of cancer associated lncRNAs
Pieter-Jan Volders
Jo Vandesompele
Kris Gevaert
Dissertation
2015
Fast profiling of protease specificity reveals similar substrate specificities for cathepsins K, L and S
Matej Vizovišek
Robert Vidmar
Emmy Van Quickelberghe
Francis Impens
Uroš Andjelković
Barbara Sobotič
Veronika Stoka
Kris Gevaert
Boris Turk
Marko Fonović
A1
Journal Article
in
PROTEOMICS
2015
GRIM REAPER peptide binds to receptor kinase PRK5 to trigger cell death in Arabidopsis
Michael Wrzaczek
Julia P Vainonen
Simon Stael
Styliani Tsiatsiani
Hanna Help-Rinta-Rahko
Adrien Gauthier
David Kaufholdt
Benjamin Bollhöner
Airi Lamminmäki
An Staes
et al.
A1
Journal Article
in
EMBO JOURNAL
2015
LRRK2 functions in synaptic vesicle endocytosis through a kinase-dependent mechanism
Amaia M Arranz
Lore Delbroek
Kristof Van Kolen
Marco R Guimarães
Wim Mandemakers
Guy Daneels
Samer Matta
Sara Calafate
Hamdy Shaban
Pieter Baatsen
et al.
A1
Journal Article
in
JOURNAL OF CELL SCIENCE
2015
Limited proteolysis combined with stable isotope labeling reveals conformational changes in protein (pseudo)kinases upon binding small molecules
Michela Di Michele
Elisabeth Stes
Elien Vandermarliere
Rohit Arora
Juan Astorga-Wells
Jonathan Vandenbussche
Erika van Heerde
Roman Zubarev
Pascal Bonnet
Joannes TM Linders
et al.
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2015
Metabolic regulation of N-terminal acetylation in Saccharomyces cerevisiae
Sylvia Varland
Petra Van Damme
Jolien Hollebeke
Henriette Aksnes
Kris Gevaert
Thomas Arnesen
C3
Conference
2015
Multiple mechanisms limit meiotic crossovers: TOP3 alpha and two BLM homologs antagonize crossovers in parallel to FANCM
Mathilde Séguéla-Arnaud
Wayne Crismani
Cécile Larchevêque
Julien Mazel
Nicole Froger
Sandrine Choinard
Afef Lemhemdi
Nicolas Macaisne
Jelle Van Leene
Kris Gevaert
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2015
N-terminal acetylome analysis reveals the specificity of Naa50 (Nat5) and suggests a kinetic competition between N-terminal acetyltransferases and methionine aminopeptidases
Petra Van Damme
Kristine Hole
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
PROTEOMICS
2015
NBPF1, a tumor suppressor candidate in neuroblastoma, exerts growth inhibitory effects by inducing a G1 cell cycle arrest
Vanessa Andries
Karl Vandepoele
Katrien Staes
Geert Berx
Pieter Bogaert
Gert Van Isterdael
Daisy Ginneberge
Eef Parthoens
Jonathan Vandenbussche
Kris Gevaert
et al.
A1
Journal Article
in
BMC CANCER
2015
OMICS views on protein N-terminal biology
Petra Van Damme
Kris Gevaert
Editorial material
2015
PepShell : visualization of conformational proteomics data
Elien Vandermarliere
Davy Maddelein
Niels Hulstaert
Elisabeth Stes
Michela Di Michele
Kris Gevaert
Edgar Jacoby
Dirk Brehmer
Lennart Martens
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2015
Peptide-level robust ridge regression modeling improves both sensitivity and specificity in quantitative proteomics
Ludger Goeminne
Lieven Clement
Kris Gevaert
Klaas Vandepoele
C3
Conference
2015
Phosphoproteomics-based peptide ligand-receptor kinase pairing: commentary on: 'A peptide hormone and its receptor protein kinase regulate plant cell expansion'
Elisabeth Stes
Kris Gevaert
Ive De Smet
Editorial material
2015
Plant hormone signalling through the eye of the mass spectrometer
Alan Walton
Elisabeth Stes
Ive De Smet
Sofie Goormachtig
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2015
Protein methionine sulfoxide dynamics in Arabidopsis thaliana under oxidative stress
Silke Jacques
Bart Ghesquière
Pieter-Jan De Bock
Hans Demol
Khadija Wahni
Patrick Willems
Joris Messens
Frank Van Breusegem
Kris Gevaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2015
Proteomic approaches to identify substrates of the three Deg/HtrA proteases of the cyanobacterium Synechocystis sp PCC 6803
Lam X Tam
Harald Aigner
Evy Timmerman
Kris Gevaert
Christiane Funk
A1
Journal Article
in
BIOCHEMICAL JOURNAL
2015
Proteomic identification of cysteine cathepsin substrates shed from the surface of cancer cells
Barbara Sobotič
Matej Vizovišek
Robert Vidmar
Petra Van Damme
Vasilena Gocheva
Johanna A Joyce
Kris Gevaert
Vito Turk
Boris Turk
Marko Fonović
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2015
Quantitative proteomics reveals altered expression of actin binding proteins after LMNA knockdown in human dermal fibroblasts
Tobias Corne
Tom Sieprath
Jonathan Vandenbussche
Kris Gevaert
Winnok De Vos
C3
Conference
2015
Robust peptide-based models in quantitative proteomics
Ludger Goeminne
Klaas Vandepoele
Kris Gevaert
Lieven Clement
C3
Conference
2015
Structural investigation of B-Raf paradox breaker and inducer inhibitors
Rohit Arora
Michela Di Michele
Elisabeth Stes
Elien Vandermarliere
Lennart Martens
Kris Gevaert
Erika Van Heerde
Joannes TM Linders
Dirk Brehmer
Edgar Jacoby
et al.
A1
Journal Article
in
JOURNAL OF MEDICINAL CHEMISTRY
2015
Study of protein expresion [sic] in peri-infarct tissue after cerebral ischemia
David Brea
Jesús Agulla
An Staes
Kris Gevaert
Francisco Campos
Tomás Sobrino
Miguel Blanco
Antoni Dávalos
José Castillo
Pedro Ramos-Cabrer
A1
Journal Article
in
SCIENTIFIC REPORTS
2015
The RING E3 ligase KEEP ON GOING modulates JASMONATE ZIM-DOMAIN12 stability
Laurens Pauwels
Andrés Ritter Traub
Jonas Goossens
Astrid Nagels Durand
Hongxia Liu
Yangnan Gu
Jan Geerinck
Marta Boter
Robin Vanden Bossche
Rebecca De Clercq
et al.
A1
Journal Article
in
PLANT PHYSIOLOGY
2015
The iceLogo web server and SOAP service for determining protein consensus sequences
Davy Maddelein
Niklaas Colaert
Iain Buchanan
Niels Hulstaert
Kris Gevaert
Lennart Martens
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2015
Toll-like receptor 4 engagement on dendritic cells restrains phago-lysosome fusion and promotes cross-presentation of antigens
Andrés Alloatti
Fiorlla Kotsias
Anne-Marie Pauwels
Jean-Marie Carpier
Mabel Jouve
Evy Timmerman
Luigia Pace
Pablo Vargas
Mathieu Maurin
Ulf Gehrmann
et al.
A1
Journal Article
in
IMMUNITY
2015
Variable glutamine-rich repeats modulate transcription factor activity
Rita Gemayel
Sreenivas Chavali
Ksenia Pougach
Matthieu Legendre
Bo Zhu
Steven Boeynaems
Elisa van der Zande
Kris Gevaert
Frederic Rousseau
Joost Schymkowitz
et al.
A1
Journal Article
in
MOLECULAR CELL
2015
2014
A COFRADIC protocol to study protein ubiquitination
Elisabeth Stes
Mathias Laga
Alan Walton
Noortje Samyn
Evy Timmerman
Ive De Smet
Sofie Goormachtig
Kris Gevaert
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2014
A Saccharomyces cerevisiae model reveals in vivo functional impairment of the Ogden syndrome N-Terminal Acetyltransferase NAA10 Ser37Pro Mutant
Petra Van Damme
Svein I. Støve
Nina Glomnes
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2014
A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites
Alexander Koch
Daria Fijalkowska
Sandra Steyaert
Elvis Ndah
Jeroen Crappé
Sarah De Keulenaer
Ellen De Meester
Ming Ma
Ben Shen
Kris Gevaert
et al.
A1
Journal Article
in
PROTEOMICS
2014
ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development
Liesbeth Vercruyssen
Aurine Verkest
Nathalie Gonzalez Sanchez
Ken Heyndrickx
Dominique Eeckhout
Soon-Ki Han
Teddy Jégu
Rafal Archacki
Jelle Van Leene
Megan Andriankaja
et al.
A1
Journal Article
in
PLANT CELL
2014
Arabidopsis thaliana RNase H2 deficiency counteracts the needs for the WEE1 checkpoint kinase but triggers genome instability
Pooneh Kalhorzadeh
Zhubing Hu
Toon Cools
Simon Amiard
Eva-Maria Willing
Nancy De Winne
Kris Gevaert
Geert De Jaeger
Korbinian Schneeberger
Charles I White
et al.
A1
Journal Article
in
PLANT CELL
2014
Early targets of miR-34a in neuroblastoma
Pasqualino De Antonellis
Marianeve Carotenuto
Jonathan Vandenbussche
Gennaro De Vita
Veronica Ferrucci
Chiara Medaglia
Iolanda Boffa
Alessandra Galiero
Sarah Di Somma
Daniela Magliulo
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2014
Granzyme M targets topoisomerase II alpha to trigger cell cycle arrest and caspase-dependent apoptosis
SAH de Poot
KW Lai
L van der Wal
Kim Plasman
Petra Van Damme
AC Porter
Kris Gevaert
N Bovenschen
A1
Journal Article
in
CELL DEATH AND DIFFERENTIATION
2014
Holistic view on the extended substrate specificities of orthologous granzymes
Kim Plasman
Sebastian Maurer-Stroh
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2014
How has urinary proteomics contributed to the discovery of early biomarkers of acute kidney injury?
Jorien De Loor
Kris Gevaert
Eric Hoste
Evelyne Meyer
A1
Journal Article
in
EXPERT REVIEW OF PROTEOMICS
2014
Identification of Serpinb6b as a species-specific mouse granzyme A inhibitor suggests functional divergence between human and mouse granzyme A
Dion Kaiserman
Sarah E Stewart
Kim Plasman
Kris Gevaert
Petra Van Damme
Phillip I Bird
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2014
Importance of extended protease substrate recognition motifs in steering BNIP-2 cleavage by human and mouse granzymes B
Petra Van Damme
Kim Plasman
Giel Vandemoortele
Veronique Jonckheere
Sebastian Maurer-Stroh
Kris Gevaert
A1
Journal Article
in
BMC BIOCHEMISTRY
2014
PINK1 loss-of-function mutations affect mitochondrial complex I activity via NdufA10 ubiquinone uncoupling
Vanessa A Morais
Dominik Haddad
Katleen Craessaerts
Pieter-Jan De Bock
Jef Swerts
Sven Vilain
Liesbeth Aerts
Lut Overbergh
Anne Grünewald
Philip Seibler
et al.
A1
Journal Article
in
SCIENCE
2014
Preparation of Arabidopsis thaliana seedling proteomes for identifying metacaspase substrates by N-terminal COFRADIC
Styliani Tsiatsiani
Simon Stael
Petra Van Damme
Frank Van Breusegem
Kris Gevaert
Bookchapter
in
Caspases, paracaspases, and metacaspases : methods and protocols
2014
Proteomics methods to study methionine oxidation
Bart Ghesquière
Kris Gevaert
A1
Journal Article
in
MASS SPECTROMETRY REVIEWS
2014
Quantitative proteomics reveals differential effects of ZMPSTE24 and LMNA knockdown on human fibroblasts
Tobias Corne
Tom Sieprath
Jonathan Vandenbussche
Kris Gevaert
Winnok De Vos
C3
Conference
2014
Substrate specificities of the granzyme tryptases A and K
Kim Plasman
Hans Demol
Philip I Bird
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2014
Sulfenome mining in Arabidopsis thaliana
Cezary Waszczak
Mosammat Salma Akter
Dominique Eeckhout
Geert Persiau
Khadija Wahni
Nandita Bodra
Inge Van Molle
Barbara De Smet
Didier Vertommen
Kris Gevaert
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2014
Taximin, a conserved plant-specific peptide is involved in the modulation of plant-specialized metabolism
Miriam Onrubia
Jacob Pollier
Robin Vanden Bossche
Marc Goethals
Kris Gevaert
Elisabet Moyano
Heriberto Vidal-Limon
Rosa M Cusidó
Javier Palazón
Alain Goossens
A1
Journal Article
in
PLANT BIOTECHNOLOGY JOURNAL
2014
The Non-JAZ TIFY protein TIFY8 from Arabidopsis thaliana is a transcriptional repressor
Amparo Cuéllar Pérez
Astrid Nagels Durand
Robin Vanden Bossche
Rebecca De Clercq
Geert Persiau
Saskia C. M. Van Wees
Corné M. J. Pieterse
Kris Gevaert
Geert De Jaeger
Alain Goossens
et al.
A1
Journal Article
in
PLOS ONE
2014
The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants
Astrid Gadeyne
Clara Sánchez-Rodríguez
Steffen Vanneste
Simone Di Rubbo
Henrik Zauber
Kevin Vanneste
Jelle Van Leene
Nancy De Winne
Dominique Eeckhout
Geert Persiau
et al.
A1
Journal Article
in
CELL
2014
The deubiquitinase USP15 antagonizes Parkin-mediated mitochondrial ubiquitination and mitophagy
Tom Cornelissen
Dominik Haddad
Fieke Wauters
Cindy Van Humbeeck
Wim Mandemakers
Brianada Koentjoro
Carolyn Sue
Kris Gevaert
Bart De Strooper
Patrik Verstreken
et al.
A1
Journal Article
in
HUMAN MOLECULAR GENETICS
2014
The proteome under translational control
Daria Fijalkowska
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
PROTEOMICS
2014
Unraveling the specificities of the different human methionine sulfoxide reductases
Elien Vandermarliere
Bart Ghesquière
Veronique Jonckheere
Kris Gevaert
Lennart Martens
A1
Journal Article
in
PROTEOMICS
2014
qcML: an exchange format for quality control metrics from mass spectrometry experiments
Mathias Walzer
Lucia Espona Pernas
Sara Nasso
Wout Bittremieux
Sven Nahnsen
Pieter Kelchtermans
Peter Pichler
Henk WP van den Toorn
An Staes
Jonathan Vandenbussche
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2014
2013
A nanobody targeting the F-actin capping protein CapG restrains breast cancer metastasis
Katrien Van Impe
Jonas Bethuyne
Steven Cool
Francis Impens
David Ruano-Gallego
Olivier De Wever
Berlinda Vanloo
Marleen Van Troys
Kathleen Lambein
Ciska Boucherie
et al.
A1
Journal Article
in
BREAST CANCER RESEARCH
2013
A protein phosphatase 2A complex spatially controls plant cell division
Lara Spinner
Astrid Gadeyne
Katia Belcram
Magali Goussot
Michael Moison
Yann Duroc
Dominique Eeckhout
Nancy De Winne
Estelle Schaefer
Eveline Van De Slijke
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2013
Activation of ADF/cofilin by phosphorylation-regulated Slingshot phosphatase is required for the meiotic spindle assembly in Xenopus laevis oocytes
Shohei Iwase
Ryuhei Sato
Pieter-Jan De Bock
Kris Gevaert
Saburo Fujiki
Toshinobu Tawada
Miyako Kuchitsu
Yuka Yamagishi
Shoichiro Ono
Hiroshi Abe
A1
Journal Article
in
MOLECULAR BIOLOGY OF THE CELL
2013
Asn₃, a reliable, robust, and universal lock mass for improved accuracy in LC-MS and LC-MS/MS
An Staes
Jonathan Vandenbussche
Hans Demol
Marc Goethals
Sule Yilmaz-Rumpf
Niels Hulstaert
Sven Degroeve
Pieter Kelchtermans
Lennart Martens
Kris Gevaert
A1
Journal Article
in
ANALYTICAL CHEMISTRY
2013
Compound A, a selective glucocorticoid receptor modulator, enhances heat shock protein Hsp70 gene promoter activation
Ilse Beck
Zuzanna Drebert
Ruben Hoya-Arias
Ali A Bahar
Michael Devos
Dorien Clarisse
Sofie Desmet
Nadia Bougarne
Bart Ruttens
Valerie Gossye
et al.
A1
Journal Article
in
PLOS ONE
2013
Conservation of the extended substrate specificity profiles among homologous granzymes across species
Kim Plasman
Sebastian Maurer-Stroh
Jamshaid Ahmad
Han Hao
Dion Kaiserman
Fernanda L Sirota
Veronique Jonckheere
Philip I Bird
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2013
Constitutively active UVR8 photoreceptor variant in Arabidopsis
Marc Heijde
Melanie Binkert
Ruohe Yin
Florence Ares-Orpel
Luca Rizzini
Eveline Van De Slijke
Geert Persiau
Jonah Nolf
Kris Gevaert
Geert De Jaeger
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2013
Contemporary positional proteomics strategies to study protein processing
Kim Plasman
Petra Van Damme
Kris Gevaert
A1
Journal Article
in
CURRENT OPINION IN CHEMICAL BIOLOGY
2013
Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events
Gerben Menschaert
Wim Van Criekinge
Tineke Notelaers
Alexander Koch
Jeroen Crappé
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2013
Development of an enzyme-linked immunosorbent assay for detection of cellular and in vivo LRRK2 S935 phosphorylation
Lore Delbroek
Kristof Van Kolen
Liesbeth Steegmans
Raquel da Cunha
Wim Mandemakers
Guy Daneels
Pieter-Jan De Bock
Jinwei Zhang
Kris Gevaert
Bart De Strooper
et al.
A1
Journal Article
in
JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS
2013
Early targets of MIR-34A in neuroblastoma
P De Antonellis
M Carotenuto
G De Vita
Jonathan Vandenbussche
C Medaglia
J Vandesopele
P Mestdagh
Lennart Martens
An Staes
Kathleen Moens
et al.
C3
Conference
2013
Effect of phospholipid molecular structure on its interaction with whey proteins in aqueous solution
Marios Kasinos
Paolo Sabatino
Berlinda Vanloo
Kris Gevaert
José Martins
Paul Van der Meeren
A1
Journal Article
in
FOOD HYDROCOLLOIDS
2013
Effect of sodium nitrite on protein oxidation in pork myofibrillar proteins
Els Vossen
Kris Gevaert
Stefaan De Smet
C3
Conference
2013
HPLC-based quantification of in vitro N-terminal acetylation
Rune H. Evjenth
Petra Van Damme
Kris Gevaert
Thomas Arnesen
Bookchapter
in
Protein Acetylation : Methods and Protocols
2013
High entomotoxicity and mechanism of the fungal GalNAc/Gal-specific Rhizoctonia solani lectin in pest insects
Mohamad Hamshou
Els Van Damme
Silvia Caccia
Kaat Cappelle
Gianni Vandenborre
Bart Ghesquière
Kris Gevaert
Guy Smagghe
A1
Journal Article
in
JOURNAL OF INSECT PHYSIOLOGY
2013
Improving the identification rate of endogenous peptides using electron transfer dissociation and collision-induced dissociation
Eisuke Hayakawa
Gerben Menschaert
Pieter-Jan De Bock
Walter Luyten
Kris Gevaert
Geert Baggerman
Liliane Schoofs
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2013
In-gel N-acetylation for the quantification of the degree of protein in vivo N-terminal acetylation
Petra Van Damme
Thomas Arnesen
Bart Ruttens
Kris Gevaert
Bookchapter
in
Protein Acetylation : Methods and Protocols
2013
LNCipedia 2.0: a database for annotated human lncRNA transcript sequences and structures
Pieter-Jan Volders
Kenny Helsens
Xiaowei Wang
Lennart Martens
Kris Gevaert
Jo Vandesompele
Pieter Mestdagh
C3
Conference
2013
LNCipedia 2.0: a database for annotated human lncRNA transcript sequences and structures
Pieter-Jan Volders
Kenny Helsens
Xiaowei Wang
Lennart Martens
Kris Gevaert
Jo Vandesompele
Pieter Mestdagh
C3
Conference
2013
LNCipedia : a database for annotated human lncRNA transcript sequences and structures
Pieter-Jan Volders
Kenny Helsens
Xiaowei Wang
Björn Menten
Lennart Martens
Kris Gevaert
Jo Vandesompele
Pieter Mestdagh
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2013
LNCipedia: a database for annotated human lncRNA transcript sequences and structures
Pieter-Jan Volders
Kenny Helsens
Xiaowei Wang
Lennart Martens
Kris Gevaert
Jo Vandesompele
Pieter Mestdagh
C3
Conference
2013
Mapping proteolytic processing in the secretome of gastric cancer-associated myofibroblasts reveals activation of MMP-1, MMP-2, and MMP-3
Christopher Holmberg
Bart Ghesquière
Francis Impens
Kris Gevaert
J Dinesh Kumar
Nicole Cash
Sandhir Kandola
Peter Hegyi
Timothy C Wang
Graham J Dockray
et al.
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2013
Matrix metalloproteinase 13 modulates intestinal epithelial barrier integrity in inflammatory diseases by activating TNF
Roosmarijn Vandenbroucke
Eline Dejonckheere
Filip Van Hauwermeiren
Sofie Lodens
Riet De Rycke
Elien Van Wonterghem
An Staes
Kris Gevaert
Carlos López-Otin
Claude Libert
A1
Journal Article
in
EMBO MOLECULAR MEDICINE
2013
Plant proteins under oxidative attack
Silke Jacques
Bart Ghesquière
Frank Van Breusegem
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2013
Protein N-terminal acetyltransferases act as N-terminal propionyltransferases in vitro and in vivo
Håvard Foyn
Petra Van Damme
Svein I Støve
Nina Glomnes
Rune Evjenth
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2013
Proteome studies of bacterial antibiotic resistance mechanisms
Iosif Vranakis
Ioannis Goniotakis
Anna Psaroulaki
Vassilios Sandalakis
Yannis Tselentis
Kris Gevaert
Georgios Tsiotis
A1
Journal Article
in
JOURNAL OF PROTEOMICS
2013
Proteome-derived peptide libraries to study the substrate specificity profiles of carboxypeptidases
Sebastian Tanco
Julia Lorenzo
Javier Garcia-Pardo
Sven Degroeve
Lennart Martens
Francesc Xavier Aviles
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2013
Proteomic and metabolomic responses to connexin43 silencing in primary hepatocyte cultures
Mathieu Vinken
Michaël Maes
Rachel Cavill
Dirk Valkenborg
James K Ellis
Elke Decrock
Luc Leybaert
An Staes
Kris Gevaert
André G Oliveira
et al.
A1
Journal Article
in
ARCHIVES OF TOXICOLOGY
2013
SCX charge state selective separation of tryptic peptides combined with 2D-RP-HPLC allows for detailed proteome mapping
Lazaro H Betancourt
Pieter-Jan De Bock
An Staes
Evy Timmerman
Yasset Perez-Riverol
Aniel Sanchez
Vladimir Besada
Luis Javier Gonzalez
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
JOURNAL OF PROTEOMICS
2013
The Arabidopsis METACASPASE9 degradome
Styliani Tsiatsiani
Evy Timmerman
Pieter-Jan De Bock
Dominique Vercammen
Simon Stael
Brigitte Van De Cotte
An Staes
Marc Goethals
Tine Beunens
Petra Van Damme
et al.
A1
Journal Article
in
PLANT CELL
2013
The Online Protein Processing Resource (TOPPR) : a database and analysis platform for protein processing events
Niklaas Colaert
Davy Maddelein
Francis Impens
Petra Van Damme
Kim Plasman
Kenny Helsens
Niels Hulstaert
Joël Vandekerckhove
Kris Gevaert
Lennart Martens
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2013
The deubiquitylase USP33 discriminates between RALB functions in autophagy and innate immune response
Michal Simicek
Sam Lievens
Mathias Laga
Dmytro Guzenko
Vasily N Aushev
Peter Kalev
Maria Francesca Baietti
Sergei V Strelkov
Kris Gevaert
Jan Tavernier
et al.
A1
Journal Article
in
NATURE CELL BIOLOGY
2013
Unraveling substrate repertoires and specificities of orthologous granzymes by peptide-based, gel-free proteomics
Kim Plasman
Kris Gevaert
Petra Van Damme
Dissertation
2013
Vpr content of HIV-1 virions determines infection of resting peripheral blood CD4⁺ lymphocytes
Anouk Van Nuffel
Francis Impens
Ann Baeyens
Stijn Vanhee
Wojciech Witkowski
Elien Vandermarliere
Hanne Vanderstraeten
Evelien Naessens
Kathleen Van Landeghem
Sophie Vermaut
et al.
C3
Conference
2013
2012
A catalogue of putative HIV-1 protease host cell substrates
Francis Impens
Evy Timmerman
An Staes
Kathleen Moens
Kevin Ariën
Bruno Verhasselt
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
BIOLOGICAL CHEMISTRY
2012
Cells lacking β-actin are genetically reprogrammed and maintain conditional migratory capacity
Davina Tondeleir
Anja Lambrechts
Matthias Müller
Veronique Jonckheere
Thierry Doll
Drieke Vandamme
Karima Bakkali
Davy Waterschoot
Marianne Lemaistre
Olivier Debeir
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2012
Chitinase-like proteins are candidate biomarkers for sepsis-induced acute kidney injury
Bert Maddens
Bart Ghesquière
Raymond Vanholder
Dieter Demon
J Vanmassenhove
Kris Gevaert
Evelyne Meyer
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2012
Degradomics reveals that cleavage specificity profiles of caspase-2 and effector caspases are alike
Magdalena Wejda
Francis Impens
Nozomi Takahashi
Petra Van Damme
Kris Gevaert
Peter Vandenabeele
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2012
GalNAc/Gal-binding Rhizoctonia solani agglutinin has antiproliferative activity in Drosophila melanogaster S2 cells via MAPK and JAK/STAT signaling
Mohamad Hamshou
Els Van Damme
Gianni Vandenborre
Bart Ghesquière
Geert Trooskens
Kris Gevaert
Guy Smagghe
A1
Journal Article
in
PLOS ONE
2012
How many spots with missing values can be tolerated in quantitative two-dimensional gel electrophoresis when applying univariate statistics?
Maria Zellner
Alexandra Graf
Sonja Zehetmayer
Wolfgang Winkler
An Staes
Kris Gevaert
Joël Vandekerckhove
Martina Marchetti-Deschmann
Ingrid Miller
Peter Bauer
et al.
A1
Journal Article
in
JOURNAL OF PROTEOMICS
2012
Interaction of α-catulin with dystrobrevin contributes to integrity of dystrophin complex in muscle
Hyun J Oh
Linu S Abraham
Jolanda van Hengel
Christophe Stove
Tomasz J Proszynski
Kris Gevaert
Joseph X DiMario
Joshua R Sanes
Frans Van Roy
Hongkyun Kim
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2012
Investigation of rifampicin resistance mechanisms in Brucella abortus using MS-driven comparative proteomics
Vassilios Sandalakis
Anna Psaroulaki
Pieter-Jan De Bock
Athanasia Christidou
Kris Gevaert
Georgios Tsiotis
Yiannis Tselentis
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2012
LRRK2 controls an EndoA phosphorylation cycle in synaptic endocytosis
Samer Matta
Kristof Van Kolen
Raquel da Cunha
Geert van den Bogaart
Wim Mandemakers
Katarzyna Miskiewicz
Pieter-Jan De Bock
Vanessa A Morais
Sven Vilain
Dominik Haddad
et al.
A1
Journal Article
in
NEURON
2012
Lncipedia: a novel database for annotated lncRNA sequences and structures
Pieter-Jan Volders
Kenny Helsens
Xiaowei Wang
Lennart Martens
Kris Gevaert
Jo Vandesompele
Pieter Mestdagh
C3
Conference
2012
N-terminal acetylation and other functions of Nα-acetyltransferases
Jolien Hollebeke
Petra Van Damme
Kris Gevaert
A1
Journal Article
in
BIOLOGICAL CHEMISTRY
2012
N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB
Petra Van Damme
Marta Lasa
Bogdan Polevoda
Cristina Gazquez
Alberto Elosegui-Artola
Duk Soo Kim
Elena De Juan-Pardo
Kimberly Demeyer
Kristine Hole
Esther Larrea
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2012
Natural substrates of plant proteases: how can protease degradomics extend our knowledge?
Styliani Tsiatsiani
Kris Gevaert
Frank Van Breusegem
A1
Journal Article
in
PHYSIOLOGIA PLANTARUM
2012
Protein N-terminal acetyltransferases: when the start matters
Kristian K Starheim
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
TRENDS IN BIOCHEMICAL SCIENCES
2012
Proteome profiling of the green sulfur bacterium Chlorobaculum tepidum by N-terminal proteomics
Kalliopi Kouyianou
Pieter-Jan De Bock
Niklaas Colaert
Antigoni Nikolaki
Aikaterini Aktoudianaki
Kris Gevaert
Georgios Tsiotis
A1
Journal Article
in
PROTEOMICS
2012
Quantitative proteome profiling of C. burnetii under tetracycline stress conditions
Iosif Vranakis
Pieter-Jan De Bock
Anastasia Papadioti
Yannis Tselentis
Kris Gevaert
Georgios Tsiotis
Anna Psaroulaki
A1
Journal Article
in
PLOS ONE
2012
Study of the whole cell lysate of two Coxiella burnetii strains using N-Terminomics
Anastatia Papadioti
Pieter-Jan De Bock
Iosif Vranakis
Yiannis Tselentis
Kris Gevaert
Anna Psaroulaki
Georgios Tsiotis
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2012
The Apaf-1-binding protein Aven is cleaved by Cathepsin D to unleash its anti-apoptotic potential
IM Melzer
SBM Fernández
S Bösser
K Lohrig
U Lewandrowski
D Wolters
S Kehrloesser
M-L Brezniceanu
AC Theos
PM Irusta
et al.
A1
Journal Article
in
CELL DEATH AND DIFFERENTIATION
2012
The multifunctionality of Arabidopsis metacaspases highlighted by their degradomes
Styliani Tsiatsiani
Frank Van Breusegem
Kris Gevaert
Dissertation
2012
The neural cell adhesion molecules L1 and CHL1 are cleaved by BACE1 protease in vivo
LuJia Zhou
Soraia Barao
Mathias Laga
Katrijn Bockstael
Marianne Borgers
Harry Gijsen
Wim Annaert
Diederik Moechars
Marc Mercken
Kris Gevaert
et al.
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2012
2011
A case study on the comparison of different software tools for automated quantification of peptides
Niklaas Colaert
Joël Vandekerckhove
Lennart Martens
Kris Gevaert
Bookchapter
in
Gel-free proteomics : methods and protocols
2011
A comparison of MS2-based label-free quantitative proteomic techniques with regards to accuracy and precision
Niklaas Colaert
Joël Vandekerckhove
Kris Gevaert
Lennart Martens
A1
Journal Article
in
PROTEOMICS
2011
A reproducibility-based evaluation procedure for quantifying the differences between MS/MS peak intensity normalization methods
Sven Degroeve
Niklaas Colaert
Joël Vandekerckhove
Kris Gevaert
Lennart Martens
A1
Journal Article
in
PROTEOMICS
2011
A stringent approach to improve the quality of nitrotyrosine peptide identifications
Bart Ghesquière
Kenny Helsens
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2011
Angiotensin I-converting enzyme inhibitory activity of gelatin hydrolysates and identification of bioactive peptides
Griet Herregods
John Van Camp
Nicole Morel
Bart Ghesquière
Kris Gevaert
Lieselot Vercruysse
Stephan Dierckx
Erwin Quanten
Guy Smagghe
A1
Journal Article
in
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
2011
Bioinformatics analysis of a Saccharomyces cerevisiae N-terminal proteome provides evidence of alternative translation initiation and post-translational N-terminal acetylation
Kenny Helsens
Petra Van Damme
Sven Degroeve
Lennart Martens
Thomas Arnesen
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2011
Caspase-14 is required for filaggrin degradation to natural moisturizing factors in the skin
Esther Hoste
Patrick Kemperman
Michael Devos
Geertrui Denecker
Sanja Kezic
Nico Yau
Barbara Gilbert
Saskia Lippens
Philippe De Groote
Ria Roelandt
et al.
A1
Journal Article
in
JOURNAL OF INVESTIGATIVE DERMATOLOGY
2011
Combining quantitative proteomics data processing workflows for greater sensitivity
Niklaas Colaert
Christophe Van Huele
Sven Degroeve
An Staes
Joël Vandekerckhove
Kris Gevaert
Lennart Martens
A1
Journal Article
in
NATURE METHODS
2011
Digging deeper in the data, novel approaches and analysis methods in quantitative peptide-centric proteomics
Niklaas Colaert
Kris Gevaert
Lennart Martens
Dissertation
2011
Diversity in protein glycosylation among insect species
Gianni Vandenborre
Guy Smagghe
Bart Ghesquière
Gerben Menschaert
Nagender Rao
Kris Gevaert
Els Van Damme
A1
Journal Article
in
PLOS ONE
2011
Human and mouse granzyme M display divergent and species-specific substrate specificities
Stefanie AH de Poot
Marijn Westgeest
Daniel R Hostetter
Petra Van Damme
Kim Plasman
Kimberly Demeyer
Roel Broekhuizen
Kris Gevaert
Charles S Craik
Niels Bovenschen
A1
Journal Article
in
BIOCHEMICAL JOURNAL
2011
Identification of potentially involved proteins in levofloxacin resistance mechanisms in Coxiella burnetii
Iosif Vranakis
Pieter-Jan De Bock
Anastasia Papadioti
Yannis Tselentis
Kris Gevaert
Georgios Tsiotis
Anna Psaroulaki
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2011
Interaction of the tobacco lectin with histone proteins
Dieter Schouppe
Bart Ghesquière
Gerben Menschaert
Winnok De Vos
Stéphanie Bourque
Geert Trooskens
Paul Proost
Kris Gevaert
Els Van Damme
A1
Journal Article
in
PLANT PHYSIOLOGY
2011
Lectins as tools to select for glycosylated proteins
Els Van Damme
Bookchapter
in
Gel-free proteomics : methods and protocols
2011
N-Terminal combined fractional diagonal chromatographic (COFRADIC) analysis of the human platelet proteome
Francis Impens
Kenny Helsens
Niklaas Colaert
Lennart Martens
Joël Vandekerckhove
Kris Gevaert
Bookchapter
in
Platelet proteomics : principles, analysis, and applications
2011
NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation
Petra Van Damme
Kristine Hole
Ana Pimenta-Marques
Kenny Helsens
Joël Vandekerckhove
Rui G Martinho
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
PLOS GENETICS
2011
Parkin interacts with Ambra1 to induce mitophagy
Cindy Van Humbeeck
Tom Cornelissen
Hilde Hofkens
Wim Mandemakers
Kris Gevaert
Bart De Strooper
Wim Vandenberghe
A1
Journal Article
in
JOURNAL OF NEUROSCIENCE
2011
Probing the efficiency of proteolytic events by positional proteomics
Kim Plasman
Petra Van Damme
Dion Kaiserman
Francis Impens
Kimberly Demeyer
Kenny Helsens
Marc Goethals
Phillip I Bird
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2011
Protein alpha-N-acetylation studied by N-terminomics
Petra Van Damme
Thomas Arnesen
Kris Gevaert
A1
Journal Article
in
FEBS JOURNAL
2011
Proteome-derived peptide libraries allow detailed analysis of the substrate specificities of Nα-acetyltransferases and point to hNaa10p as the post-translational actin Nα-acetyltransferase
Petra Van Damme
Rune Evjenth
Havard Foyn
Kimberly Demeyer
Pieter-Jan De Bock
Johan R Lillehaug
Joël Vandekerckhove
Thomas Arnesen
Kris Gevaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2011
RIBAR and xRIBAR: methods for reproducible relative MS/MS-based label-free protein quantification
Niklaas Colaert
Kris Gevaert
Lennart Martens
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2011
Redox proteomics of protein-bound methionine oxidation
Bart Ghesquière
Veronique Jonckheere
Niklaas Colaert
Joost Van Durme
Evy Timmerman
Marc Goethals
Joost Schymkowitz
Frederic Rousseau
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2011
Selecting protein N-terminal peptides by combined fractional diagonal chromatography
An Staes
Francis Impens
Petra Van Damme
Bart Ruttens
Marc Goethals
Hans Demol
Evy Timmerman
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
NATURE PROTOCOLS
2011
Small heat-shock protein HSPB1 mutants stabilize microtubules in Charcot-Marie-Tooth neuropathy
Leonardo Almeida-Souza
Bob Asselbergh
Constantin d'Ydewalle
Kristof Moonens
Sofie Goethals
Vicky de Winter
Abdelkarim Azmi
Joy Irobi
Jean-Pierre Timmermans
Kris Gevaert
et al.
A1
Journal Article
in
JOURNAL OF NEUROSCIENCE
2011
T-cell receptor-induced JNK activation requires proteolytic inactivation of CYLD by MALT1
Jens Staal
Yasmine Driege
Tine Bekaert
Annelies Demeyer
David Muyllaert
Petra Van Damme
Kris Gevaert
Rudi Beyaert
A1
Journal Article
in
EMBO JOURNAL
2011
The chlorosome of Chlorobaculum tepidum: size, mass and protein composition revealed by electron microscopy, dynamic light scattering and mass spectrometry-driven proteomics
K Kouyianou
Pieter-Jan De Bock
SA Muller
A Nikolaki
A Rizos
V Krzyzanek
A Aktoudianaki
Joël Vandekerckhove
A Engel
Kris Gevaert
et al.
A1
Journal Article
in
PROTEOMICS
2011
The human N-alpha-acetyltransferase 40 (hNaa40p/hNatD) is conserved from yeast and N-terminally acetylates histones H2A and H4
Kristine Hole
Petra Van Damme
Monica Dalva
Henriette Aksnes
Nina Glomnes
Jan Erik Varhaug
Johan R Lillehaug
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
PLOS ONE
2011
The miR-17-92 microRNA cluster regulates multiple components of the TGF-β pathway in neuroblastoma
Pieter Mestdagh
Ana-Karin Bostrom
Francis Impens
Erik Fredlund
Gert Van Peer
Paquito De Antonelis
Kristoffer Von Stedingk
Bart Ghesquière
Stefanie Schulte
Michael Dews
et al.
C3
Conference
2011
cIAP1/2 are direct E3 ligases conjugating diverse types of ubiquitin chains to receptor interacting proteins kinases 1 to 4 (RIP1-4)
Mathieu Bertrand
Saskia Lippens
An Staes
Barbara Gilbert
Ria Roelandt
Jelle De Medts
Kris Gevaert
Wim Declercq
Peter Vandenabeele
A1
Journal Article
in
PLOS ONE
2011
m-Calpain activation in vitro does not require autolysis or subunit dissociation
Jordan S Chou
Francis Impens
Kris Gevaert
Peter L Davies
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
2011
thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files
Niklaas Colaert
Harald Barsnes
Marc Vaudel
Kenny Helsens
Evy Timmerman
Albert Sickmann
Kris Gevaert
Lennart Martens
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2011
2010
A quantitative proteomics design for systematic identification of protease cleavage events
Francis Impens
Niklaas Colaert
Kenny Helsens
Bart Ghesquière
Evy Timmerman
Pieter-Jan De Bock
Benjamin M Chain
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2010
Complementary positional proteomics for screening substrates of endo- and exoproteases
Petra Van Damme
An Staes
Silvia Bronsoms
Kenny Helsens
Niklaas Colaert
Evy Timmerman
Francesc X Aviles
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
NATURE METHODS
2010
Glycosylation signatures in Drosophila : fishing with lectins
Gianni Vandenborre
Els Van Damme
Bart Ghesquière
Gerben Menschaert
Mohamad Hamshou
Rameshwaram Nagender Rao
Kris Gevaert
Guy Smagghe
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2010
Increasing the specificity and the sensitivity in peptide centric proteomics
Kenny Helsens
Kris Gevaert
Lennart Martens
Dissertation
2010
Integrated proteomic analysis reveals a substantial enrichment of protein trafficking processes in hippocampus tissue after hypoxic stress
Roos Van Elzen
Bart Ghesquière
Evy Timmerman
Stefaan Vandamme
Luc Moens
Kris Gevaert
Sylvia Dewilde
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2010
Listeria monocytogenes impairs SUMOylation for efficient infection
David Ribet
Melanie Hamon
Edith Gouin
Marie-Anne Nahori
Francis Impens
Helene Neyret-Kahn
Kris Gevaert
Joël Vandekerckhove
Anne Dejean
Pascale Cossart
A1
Journal Article
in
NATURE
2010
MS-driven protease substrate degradomics
Francis Impens
Niklaas Colaert
Kenny Helsens
Kim Plasman
Petra Van Damme
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2010
Membrane proteome of the green sulfur bacterium Chlorobium tepidum (syn. Chlorobaculum tepidum) analyzed by gel-based and gel-free methods
Kalliopi Kouyianou
Michalis Aivaliotis
Kris Gevaert
Michael Karas
Georgios Tsiotis
A1
Journal Article
in
PHOTOSYNTHESIS RESEARCH
2010
Rover: a tool to visualize and validate quantitative proteomics data from different sources
Niklaas Colaert
Kenny Helsens
Francis Impens
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2010
Studying in vitro and in vivo protease processing in models of cancer cell death and viral infection by N-terminal COFRADIC
Francis Impens
Kris Gevaert
Dissertation
2010
The chaperone-like Protein HYPK acts together with NatA in cotranslational N-terminal acetylation and prevention of Huntingtin aggregation
Thomas Arnesen
Kristian K Starheim
Petra Van Damme
Rune Evjenth
Huyen Dinh
Matthew J Betts
Anita Ryningen
Joël Vandekerckhove
Kris Gevaert
Dave Anderson
A1
Journal Article
in
MOLECULAR AND CELLULAR BIOLOGY
2010
The miR-17-92 MicroRNA Cluster regulates multiple components of the TGF-beta Pathway in neuroblastoma
Pieter Mestdagh
Anna-Karin Bostrom
Francis Impens
Erik Fredlund
Gert Van Peer
Pasqualino De Antonellis
Kristoffer von Stedingk
Bart Ghesquière
Stefanie Schulte
Michael Dews
et al.
A1
Journal Article
in
MOLECULAR CELL
2010
The substrate specificity profile of human granzyme A
Petra Van Damme
Sebastian Maurer-Stroh
Han Hao
Niklaas Colaert
Evy Timmerman
Frank Eisenhaber
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
BIOLOGICAL CHEMISTRY
2010
Who gets cut during cell death?
Francis Impens
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
CURRENT OPINION IN CELL BIOLOGY
2010
mir-17-92 is a master regulator of TGFβ-pathway activity in neuroblastoma
Pieter Mestdagh
Anna-Karin Böstrom
Francis Impens
Erik Fredlund
Kris Von Stedingk
Bart Ghesquière
Stefanie Schlierf
Johannes Schulte
Alexander Schramm
Kris Gevaert
et al.
C3
Conference
2010
ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics
Kenny Helsens
Niklaas Colaert
Harald Barsnes
Thilo Muth
Kristian Flikka
An Staes
Evy Timmerman
Steffi Wortelkamp
Albert Sickmann
Joël Vandekerckhove
et al.
A1
Journal Article
in
PROTEOMICS
2010
2009
A review of COFRADIC techniques targeting protein N-terminal acetylation
Petra Van Damme
Jozef Van Damme
Hans Demol
An Staes
Joël Vandekerckhove
Kris Gevaert
C1
Conference
2009
Analysis of Protein Processing by N-terminal Proteomics Reveals Novel Species-specific Substrate Determinants of Granzyme B Orthologs
Petra Van Damme
Sebastian Maurer-Stroh
Kim Plasman
Joost Van Durme
Niklaas Colaert
Evy Timmerman
Pieter-Jan De Bock
Marc Goethals
Frederic Rousseau
Joost Schymkowitz
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2009
Analysis of proteins in Chlamydia trachomatis L2 outer membrane complex, COMC
Svend Birkelund
Marie Morgan-Fisher
Evy Timmerman
Kris Gevaert
Allan C. Shaw
Gunna Christiansen
A1
Journal Article
in
FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY
2009
Analysis of the gamma-secretase interactome and validation of its association with tetraspanin-enriched microdomains
T Wakabayashi
K Craessaerts
L Bammens
M Bentahir
F Borgions
P Herdewijn
An Staes
Evy Timmerman
Joël Vandekerckhove
E Rubinstein
et al.
A1
Journal Article
in
NATURE CELL BIOLOGY
2009
Analysis of the translationally controlled tumour protein in the nematodes Ostertagia ostertagi and Caenorhabditis elegans suggests a pivotal role in egg production
Yves Meyvis
Wouter Houthoofd
Aline Visser
Gaetan Borgonie
Kris Gevaert
Jozef Vercruysse
Edwin Claerebout
Peter Geldhof
A1
Journal Article
in
INTERNATIONAL JOURNAL FOR PARASITOLOGY
2009
Caspase substrates: easily caught in deep waters?
Dieter Demon
Petra Van Damme
Tom Vanden Berghe
Joël Vandekerckhove
Wim Declercq
Kris Gevaert
Peter Vandenabeele
A1
Journal Article
in
TRENDS IN BIOTECHNOLOGY
2009
Global Analysis of the Mitochondrial N-Proteome Identifies a Processing Peptidase Critical for Protein Stability
FN Vogtle
S Wortelkamp
RP Zahedi
D Becker
C Leidhold
Kris Gevaert
J Kellermann
W Voos
A Sickmann
N Pfanner
et al.
A1
Journal Article
in
CELL
2009
Hybrid N-glycans on the host protective activation-associated secreted proteins of Ostertagia ostertagi and their importance in immunogenicity (vol 161, pg 67, 2008)
Yves Meyvis
Nico Callewaert
Kris Gevaert
Evy Timmerman
Joost Van Durme
Joost Schymkowitz
Frederic Rousseau
Jozef Vercruysse
Edwin Claerebout
Peter Geldhof
Correction
2009
Identification and Functional Characterization of N-Terminally Acetylated Proteins in Drosophila melanogaster
S Goetze
E Qeli
C Mosimann
An Staes
B Gerrits
B Roschitzki
S Mohanty
EM Niederer
E Laczko
Evy Timmerman
et al.
A1
Journal Article
in
PLOS BIOLOGY
2009
Identification of Chlamydia trachomatis CT621, a protein delivered through the type III secretion system to the host cell cytoplasm and nucleus
Anne-Sofie Hobolt-Pedersen
Gunna Christiansen
Evy Timmerman
Kris Gevaert
Svend Birkelund
A1
Journal Article
in
FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY
2009
Improved visualization of protein consensus sequences by iceLogo
Niklaas Colaert
Kenny Helsens
Lennart Martens
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
NATURE METHODS
2009
In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography
Bart Ghesquière
Niklaas Colaert
Kenny Helsens
Lien Dejager
Caroline Vanhaute
Katleen Verleysen
Koen Kas
Evy Timmerman
Marc Goethals
Claude Libert
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2009
Proteome-wide substrate analysis indicates substrate exclusion as a mechanism to generate caspase-7 versus caspase-3 specificity
Dieter Demon
Petra Van Damme
Tom Vanden Berghe
Annelies Deceuninck
Joost Van Durme
Jelle Verspurten
Kenny Helsens
Francis Impens
Magdalena Wejda
Joost Schymkowitz
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2009
Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans
Thomas Arnesen
Petra Van Damme
Bogdan Polevoda
Kenny Helsens
Rune Evjenth
Niklaas Colaert
Jan Erik Varhaug
Joël Vandekerckhove
Johan Lillehaug
Fred Sherman
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2009
Recessive osteogenesis imperfecta caused by LEPRE1 mutations: clinical documentation and identification of the splice form responsible for prolyl 3-hydroxylation
Andy Willaert
Fransiska Malfait
Sofie Symoens
Kris Gevaert
H. Kayserili
A. Megarbane
Geert Mortier
J. G. Leroy
Paul Coucke
Anne De Paepe
A1
Journal Article
in
JOURNAL OF MEDICAL GENETICS
2009
SitePredicting the cleavage of proteinase substrates
Jelle Verspurten
Kris Gevaert
Wim Declercq
Peter Vandenabeele
A1
Journal Article
in
TRENDS IN BIOCHEMICAL SCIENCES
2009
Structure of granzyme C reveals an unusual mechanism of protease autoinhibition
Dion Kaiserman
Ashley M Buckle
Petra Van Damme
James A. Irving
Ruby H. P. Law
Antony Y. Matthews
Tanya Bashtannyk-Puhalovich
Chris Langendorf
Philip Thompson
Joël Vandekerckhove
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2009
2008
A Hotspot Splicing Mutation in LEPREI Affects Prolyl 3-hydroxylation and Causes Recessive Osteogenesis Imperfecta
Andy Willaert
Sofie Symoens
Fransiska Malfait
Kris Gevaert
Paul Coucke
Anne De Paepe
C3
Conference
2008
Abolition of stress-induced protein synthesis sensitizes leukemia cells to anthracycline-induced death
Gro Gausdal
Bjøorn Tore Gjertsen
Emmet McCormack
Petra Van Damme
Randi Hovland
Camilla Krakstad
Øystein Bruserud
Kris Gevaert
Joël Vandekerckhove
Stein Ove Døskeland
A1
Journal Article
in
BLOOD
2008
Analysis of the transthyretin-like (TTL) gene family in Ostertagia ostertagi - Comparison with other strongylid nematodes and Caenorhabditis elegans
Heidi Saverwyns
Aline Visser
J VAN DURME
D POWER
I MORGADO
MW KENNEDY
DP KNOX
J SCHYMKOWITZ
F ROUSSEAU
Kris Gevaert
et al.
A1
Journal Article
in
INTERNATIONAL JOURNAL FOR PARASITOLOGY
2008
Analysis of the transthyretin-like (TTL) gene family in Ostertagia ostertagi: comparison with other strongylid nematodes and Caenorhabditis elegans
Aline Visser
Heidi Saverwyns
J Van Durme
D Power
I Morgado
MW Kennedy
D Knox
J Schymkowitz
F Rousseau
Kris Gevaert
et al.
C3
Conference
2008
Caspase-14 is a crucial protease in proper stratum corneum formation
E HOSTE
G DENECKER
Petra Van Damme
J HACHEM
B GILBERT
Petra Ovaere
RB PRESLAND
T MAKINO
N HUH
PM ELIAS
et al.
C3
Conference
2008
Disentanglement of protease substrate repertoires
Petra Van Damme
J VANDELKERCKHOVE
Kris Gevaert
A1
Journal Article
in
BIOLOGICAL CHEMISTRY
2008
Function of the translationally controlled tumor protein in Ostertagia ostertagi and Caenorhabditis elegans
Yves Meyvis
Wouter Houthoofd
Aline Visser
Gaetan Borgonie
Kris Gevaert
Jozef Vercruysse
Edwin Claerebout
Peter Geldhof
C3
Conference
2008
Gender-enriched transcription of activation associated secreted proteins in Ostertagia ostertagi
Aline Visser
Annelies Van Zeveren
Yves Meyvis
Iris Peelaers
Wim Van Den Broeck
Kris Gevaert
Jozef Vercruysse
Edwin Claerebout
Peter Geldhof
A1
Journal Article
in
INTERNATIONAL JOURNAL FOR PARASITOLOGY
2008
Human Proteinpedia enables sharing of human protein data
Suresh Mathivanan
Mukhtar Ahmed
Natalie G Ahn
Hainard Alexandre
Ramars Amanchy
Philip C Andrews
Joel S Bader
Brian M Balgley
Marcus Bantscheff
Keiryn L Bennett
et al.
A1
Journal Article
in
NATURE BIOTECHNOLOGY
2008
Hybrid N-glycans on the host protective activation-associated secreted proteins of Ostertagia ostertagi and their importance in immunogenicity
Yves Meyvis
Nico Callewaert
Kris Gevaert
Evy Timmerman
Joost Van Durme
Joost Schymkowitz
Frederic Rousseau
Jozef Vercruysse
Edwin Claerebout
Peter Geldhof
A1
Journal Article
in
MOLECULAR AND BIOCHEMICAL PARASITOLOGY
2008
HyperISGylation of old world monkey ISG15 in human cells
Els Pattyn
Annick Verhee
Isabel Uyttendaele
Julie Piessevaux
Evy Timmerman
Kris Gevaert
Joël Vandekerckhove
Frank Peelman
Jan Tavernier
A1
Journal Article
in
PLOS ONE
2008
Identification and characterization of a novel specific secreted protein family for selected members of the subfamily Ostertagiinae (Nematoda)
Heidi Saverwyns
Aline Visser
AJ Nisbet
Iris Peelaers
Kris Gevaert
Jozef Vercruysse
Edwin Claerebout
Peter Geldhof
A1
Journal Article
in
PARASITOLOGY
2008
Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC)
An Staes
Petra Van Damme
Kenny Helsens
Hans Demol
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2008
Listeria comet tails: the actin-based motility machinery at work
Anja Lambrechts
Kris Gevaert
P COSSART
Joël Vandekerckhove
Marleen Van Troys
A1
Journal Article
in
TRENDS IN CELL BIOLOGY
2008
Mechanistic insight into taxol-induced cell death
Francis Impens
Petra Van Damme
Hans Demol
Jozef Van Damme
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
ONCOGENE
2008
Multiple isoforms of the tumor suppressor myopodin are simultaneously transcribed in cancer cells
Ariane De Ganck
Veerle De Corte
An Staes
Kris Gevaert
Joël Vandekerckhove
Jan Gettemans
A1
Journal Article
in
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
2008
Peptizer: a tool for assessing false positive peptide identifications and manually validating selected results
Kenny Helsens
Evy Timmerman
Joël Vandekerckhove
Kris Gevaert
Lennart Martens
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2008
Protein processing characterized by a gel-free proteomics approach
Petra Van Damme
Francis Impens
Joël Vandekerckhove
Kris Gevaert
Bookchapter
in
Functional proteomics, part III
2008
Stable isotopic labeling in proteomics
Kris Gevaert
Francis Impens
Bart Ghesquière
Petra Van Damme
Anja Lambrechts
Joël Vandekerckhove
A1
Journal Article
in
PROTEOMICS
2008
Targeted peptidecentric proteomics reveals caspase-7 as a substrate of the caspase-1 inflammasomes
Mohamed Lamkanfi
Thirumala-Devi Kanneganti
Petra Van Damme
Tom Vanden Berghe
Isabel Vanoverberghe
Joël Vandekerckhove
Peter Vandenabeele
Kris Gevaert
Gabriel Nuñez
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2008
The Tandem PDZ Protein Syntenin Interacts with the Aminoacyl tRNA Synthetase Complex in a Lysyl-tRNA Synthetase-Dependent Manner
Kris Meerschaert
Eline Remue
Ariane De Ganck
An Staes
Ciska Boucherie
Kris Gevaert
Joël Vandekerckhove
Lawrence Kleiman
Jan Gettemans
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2008
The actin propulsive machinery: The proteome of Listeria monocytogenes tails
Marleen Van Troys
Anja Lambrechts
Vera David
Hans Demol
Magda Puype
J PIZARRO-CERDA
Kris Gevaert
P COSSART
Joël Vandekerckhove
A1
Journal Article
in
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
2008
The proteome of the human neuroblastoma cell line SH-SY5Y: an enlarged proteome
Kambiz Gilany
Roos Van Elzen
Kim Mous
Edmond Coen
Walter Van Dongen
Stefaan Vandamme
Kris Gevaert
Evy Timmerman
Joël Vandekerckhove
Sylvia Dewilde
et al.
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
2008
Unravelling the RIP4 signaling pathway to NF-kappa B
P DE GROOTE
S LIPPENS
B GILBERT
Kris Gevaert
Joël Vandekerckhove
P VANDENABEELE
Y DECLERCQ
C3
Conference
2008
2007
A la carte proteomics with an emphasis on gel-free techniques
Kris Gevaert
Petra Van Damme
Bart Ghesquière
Francis Impens
Lennart Martens
Kenny Helsens
Joël Vandekerckhove
A1
Journal Article
in
PROTEOMICS
2007
A new approach for mapping sialylated N-glycosites in serum proteomes
Bart Ghesquière
Lien Buyl
Hans Demol
Jozef Van Damme
An Staes
Evy Timmerman
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2007
Applications of diagonal chromatography for proteome-wide characterization of protein modifications and activity-based analyses
Kris Gevaert
Francis Impens
Petra Van Damme
Bart Ghesquière
Xavier Hanoulle
Joël Vandekerckhove
A1
Journal Article
in
FEBS JOURNAL
2007
Assessing a novel microfluidic interface for shotgun proteome analyses
An Staes
Evy Timmerman
I VAN DAMME
Kenny Helsens
Joël Vandekerckhove
M VOLLMER
Kris Gevaert
A1
Journal Article
in
JOURNAL OF SEPARATION SCIENCE
2007
Caspase-14 protects against epidermal UVB photo-damage and water loss
Geertrui Denecker
Esther Hoste
Barbara Gilbert
Tino Hochepied
Petra Ovaere
Saskia Lippens
C VAN DEN BROUCKE
Petra Van Damme
Katharina D'Herde
J HACHEM
et al.
C3
Conference
2007
Caspase-14 protects against epidermal UVB photo-damage and water loss.
Geertrui Denecker
Esther Hoste
Barbara Gilbert
Tino Hochepied
Petra Ovaere
Saskia Lippens
C VAN DEN BROUCKE
Petra Van Damme
Katharina D'Herde
J HACHEM
et al.
C3
Conference
2007
Caspase-14 protects against epidermal UVB photodamage and water loss
Geertrui Denecker
Esther Hoste
Barbara Gilbert
Tino Hochepied
Petra Ovaere
Saskia Lippens
Caroline Van den broecke
Petra Van Damme
Katharina D'Herde
JP HACHEM
et al.
A1
Journal Article
in
NATURE CELL BIOLOGY
2007
Combination of COFRADIC and high temperature - extended column length conventional liquid chromatography: A very efficient way to tackle complex protein samples, such as serum
K SANDRA
K VERLEYSEN
Christine Labeur
L VANNESTE
F D'HONDT
G THOMAS
Koen Kas
Kris Gevaert
Joël Vandekerckhove
P SANDRA
A1
Journal Article
in
JOURNAL OF SEPARATION SCIENCE
2007
Identification and characterization of filaggrin as a caspase-14 substrate
Esther Hoste
Geertrui Denecker
Petra Van Damme
RB PRESLAND
Joël Vandekerckhove
Kris Gevaert
Peter Vandenabeele
Wim Declercq
C3
Conference
2007
Implementation and application of a versatile clustering tool for tandem mass spectrometry data
Kristian Flikka
Jeroen Meukens
Kenny Helsens
Joël Vandekerckhove
Ingvar Eidhammer
Kris Gevaert
Lennart Martens
A1
Journal Article
in
PROTEOMICS
2007
Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis
Michalis Aivaliotis
Kris Gevaert
Michaela Falb
Andreas Tebbe
Kosta Konstantinidis
Birgit Bisle
Christian Klein
Lennart Martens
An Staes
Evy Timmerman
et al.
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2007
MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results
Kenny Helsens
Lennart Martens
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2007
Proteolytic cleavage of the Chlamydia pneumoniae major outer membrane protein in the absence of Pmp10
N JUUL
Evy Timmerman
Kris Gevaert
G CHRISTIANSEN
S BIRKELUND
A1
Journal Article
in
PROTEOMICS
2007
Proteome-wide identification of HtrA2/Omi substrates
Lieselotte Vande Walle
Petra Van Damme
Mohamed Lamkanfi
Xavier Saelens
Joël Vandekerckhove
Kris Gevaert
Peter Vandenabeele
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2007
The C-terminus of CIS defines its interaction pattern
Delphine Lavens
Peter Ulrichts
Dominiek Catteeuw
Kris Gevaert
Joël Vandekerckhove
Frank Peelman
Sven Eyckerman
Jan Tavernier
A1
Journal Article
in
BIOCHEMICAL JOURNAL
2007
The MAGUK protein MPP7 binds to the polarity protein hDlg1 and facilitates epithelial tight junction formation
VM STUCKE
Evy Timmerman
Joël Vandekerckhove
Kris Gevaert
A HALL
A1
Journal Article
in
MOLECULAR BIOLOGY OF THE CELL
2007
The transcriptional repressor Glis2 is a novel binding partner for p120 catenin
CR HOSKING
F ULLOA
C HOGAN
EC FERBER
A FIGUEROA
Kris Gevaert
W BIRCHMEIER
J BRISCOE
Y FUJITA
A1
Journal Article
in
MOLECULAR BIOLOGY OF THE CELL
2007
Vaccination against Ostertagia ostertagi with subfractions of the protective ES-thiol fraction
Yves Meyvis
Peter Geldhof
Kris Gevaert
Evy Timmerman
Jozef Vercruysse
Edwin Claerebout
A1
Journal Article
in
VETERINARY PARASITOLOGY
2007
2006
A comparison of the HUPO Brain Proteome project pilot with other proteomics studies
Lennart Martens
Michael Müller
Christian Stephan
Michael Hamacher
Kai A Reidegeld
Helmut E Meyer
Martin Blüggel
Joël Vandekerckhove
Kris Gevaert
Rolf Apweiler
A1
Journal Article
in
PROTEOMICS
2006
A complex interaction pattern of CIS and SOCS2 with the leptin receptor
Delphine Lavens
Tony Montoye
Julie Piessevaux
Lennart Zabeau
Joël Vandekerckhove
Kris Gevaert
W BECKER
Sven Eyckerman
Jan Tavernier
A1
Journal Article
in
JOURNAL OF CELL SCIENCE
2006
A new functional, chemical proteomics technology to identify purine nucleotide binding sites in complex proteomes
Xavier Hanoulle
Jozef Van Damme
An Staes
Lennart Martens
Marc Goethals
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2006
A small heat shock protein of Ostertagia ostertagi: Stage-specific expression, heat inducibility, and protection trial
I VERCAUTEREN
V MAERE
Jozef Vercruysse
M STEVENS
Kris Gevaert
Edwin Claerebout
A1
Journal Article
in
JOURNAL OF PARASITOLOGY
2006
Cell_motility : a cross-platform, open source application for the study of cell motion paths
Lennart Martens
Geert Monsieur
Christophe Ampe
Kris Gevaert
Joël Vandekerckhove
A1
Journal Article
in
BMC BIOINFORMATICS
2006
Four stage liquid chromatographic selection of methionyl peptides for peptide-centric proteome analysis: the proteome of human multipotent adult progenitor cells
Kris Gevaert
Jozef Pinxteren
Hans Demol
Koen Hugelier
An Staes
Jozef Van Damme
Lennart Martens
Joël Vandekerckhove
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2006
Identification and characterization of immunogenic proteins of Mycoplasma genitalium
HF SVENSTRUP
JS JENSEN
Kris Gevaert
S BIRKELUND
G CHRISTIANSEN
A1
Journal Article
in
CLINICAL AND VACCINE IMMUNOLOGY
2006
Improved tandem mass spectrometric characterization of 3-nitrotyrosine sites in peptides
Bart Ghesquière
Marc Goethals
Jozef Van Damme
An Staes
Evy Timmerman
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
RAPID COMMUNICATIONS IN MASS SPECTROMETRY
2006
Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering
Kristian Flikka
Lennart Martens
Joël Vandekerckhove
Kris Gevaert
Ingvar Eidhammer
A1
Journal Article
in
PROTEOMICS
2006
Protein processing and other modifications analyzed by diagonal peptide chromatography
Kris Gevaert
Petra Van Damme
Bart Ghesquière
Joël Vandekerckhove
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
2006
Proteome-wide characterization of N-glycosylation events by diagonal chromatography
Bart Ghesquière
Jozef Van Damme
Lennart Martens
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2006
2005
An aspartyl protease inhibitor of Ostertagia ostertagi: Molecular cloning, analysis of stage and tissue specific expression and vaccine trial
Veerle De Maere
I VERCAUTEREN
Kris Gevaert
Jozef Vercruysse
Edwin Claerebout
A1
Journal Article
in
MOLECULAR AND BIOCHEMICAL PARASITOLOGY
2005
Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis
Petra Van Damme
Lennart Martens
Jozef Van Damme
Koen Hugelier
An Staes
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
NATURE METHODS
2005
DBToolkit: processing protein databases for peptide-centric proteomics
Lennart Martens
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
BIOINFORMATICS
2005
Diagonal reverse-phase chromatography applications in peptide-centric proteomics: ahead of catalogue-omics?
Kris Gevaert
Petra Van Damme
Lennart Martens
Joël Vandekerckhove
A1
Journal Article
in
ANALYTICAL BIOCHEMISTRY
2005
Do we want our data raw?: including binary mass spectrometry data in public proteomics data repositories
Lennart Martens
Alexey I Nesvizhskii
Henning Hermjakob
Marcin Adamski
Gilbert S Omenn
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2005
Global phosphoproteome analysis on human HepG2 hepatocytes using reversed-phase diagonal LC
Kris Gevaert
An Staes
Jozef Van Damme
Sara De Groot
Koen Hugelier
Hans Demol
Lennart Martens
Marc Goethals
Joël Vandekerckhove
A1
Journal Article
in
PROTEOMICS
2005
Identification by two-dimensional electrophoresis of a new adhesin expressed by a low-passaged strain of Mycoplasma bovis
A THOMAS
P LEPRINCE
I DIZIER
H BALL
Kris Gevaert
Jozef Van Damme
J MAINIL
A LINDEN
A1
Journal Article
in
RESEARCH IN MICROBIOLOGY
2005
Molecular analysis of astacin-like metalloproteases of Ostertagia ostertagi
Veerle De Maere
Isabel Vercauteren
Peter Geldhof
Kris Gevaert
Jozef Vercruysse
Edwin Claerebout
A1
Journal Article
in
PARASITOLOGY
2005
Morphological and biochemical characterization of a human liver in a uPA-SCID mouse chimera
Philip Meuleman
Louis Libbrecht
Rita De Vos
Bernard de Hemptinne
Kris Gevaert
Joël Vandekerckhove
Tania Roskams
Geert Leroux-Roels
A1
Journal Article
in
HEPATOLOGY
2005
PRIDE: the proteomics identifications database
Lennart Martens
Henning Hermjakob
Philip Jones
Marcin Adamski
Chris Taylor
David States
Kris Gevaert
Joël Vandekerckhove
Rolf Apweiler
A1
Journal Article
in
PROTEOMICS
2005
The human platelet proteome mapped by peptide-centric proteomics: a functional protein profile
Lennart Martens
Petra Van Damme
Jozef Van Damme
An Staes
Evy Timmerman
Bart Ghesquière
Grégoire R Thomas
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2005
2004
Global differential non-gel proteomics by quantitative and stable labeling of tryptic peptides with oxygen-18
An Staes
Hans Demol
Jozef Van Damme
Lennart Martens
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2004
Reversible labeling of cysteine-containing peptides allows their specific chromatographic isolation for non-gel proteome studies
Kris Gevaert
Bart Ghesquière
An Staes
Lennart Martens
Jozef Van Damme
Grégoire Thomas
Joël Vandekerckhove
A1
Journal Article
in
PROTEOMICS
2004
The use of proteomics in the study of cell death
Xavier Saelens
G VAN LOO
Kris Gevaert
Joël Vandekerckhove
Peter Vandenabeele
Bookchapter
in
When Cells Die II: A Comprehensive Evaluation of Apoptosis and Programmed Cell Death
2004
Vaccination with an Ostertagia ostertagi polyprotein allergen protects calves against homologous challenge infection
Isabel Vercauteren
Peter Geldhof
Jozef Vercruysse
Iris Peelaers
Wim Van Den Broeck
Kris Gevaert
Edwin Claerebout
A1
Journal Article
in
INFECTION AND IMMUNITY
2004
2003
Activation-associated secreted proteins are the most abundant antigens in a host protective fraction from Ostertagia ostertagi
Peter Geldhof
Isabel Vercauteren
Kris Gevaert
An Staes
DP KNOX
Joël Vandekerckhove
Jozef Vercruysse
Edwin Claerebout
A1
Journal Article
in
MOLECULAR AND BIOCHEMICAL PARASITOLOGY
2003
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
Kris Gevaert
Marc Goethals
Lennart Martens
Jozef Van Damme
An Staes
Grégoire Thomas
Joël Vandekerckhove
A1
Journal Article
in
NATURE BIOTECHNOLOGY
2003
IL-29 Is proteomics heading towards medicine?
Joël Vandekerckhove
Jozef Van Damme
Lennart Martens
Grégoire Thomas
An Staes
Marc Goethals
Bart Ghesquière
Magda Puype
Hans Demol
Kris Gevaert
A2
Journal Article
in
PIGMENT CELL RESEARCH
2003
Protein characterization: analytical approaches and applications to proteomics
Kris Gevaert
Joël Vandekerckhove
Bookchapter
in
Encyclopedia of the human genome.
2003
2002
A matrix-assisted laser desorption ionization post-source decay (MALDI-PSD) analysis of proteins released from isolated liver mitochondria treated with recombinant truncated Bid
Geert van Loo
Hans Demol
Marjan Van Gurp
B Hoorelbeke
Peter Schotte
Rudi Beyaert
B Zhivotovsky
Kris Gevaert
Wim Declercq
Joël Vandekerckhove
et al.
A1
Journal Article
in
CELL DEATH AND DIFFERENTIATION
2002
An ASP-like protein is the most abundant antigen in a host protective fraction from Ostertagia ostertagi
Peter Geldhof
Isabel Vercauteren
Kris Gevaert
A Staes
D Knox
Edwin Claerebout
Joël Vandekerckhove
Jozef Vercruysse
C3
Conference
2002
Characterization of a secreted Chlamydia protease.
AC SHAW
BB VANDAHL
MR LARSEN
P ROEPSTORFF
Kris Gevaert
Joël Vandekerckhove
G CHRISTIANSEN
S BIRKELUND
A1
Journal Article
in
CELLULAR MICROBIOLOGY
2002
Chromatographic isolation of methionine-containing peptides for gel-free proteome analysis: identification of more than 800 Escherichia coli proteins
Kris Gevaert
Jozef Van Damme
Marc Goethals
Grégoire Thomas
Bart Hoorelbeke
Hans Demol
Lennart Martens
Magda Puype
An Staes
Joël Vandekerckhove
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2002
Comparative proteome analysis of Chlamydia trachomatis serovar A, D and L2.
AC SHAW
Kris Gevaert
Hans Demol
B HOORELBEKE
Joël Vandekerckhove
MR LARSEN
P ROEPSTORFF
A HOLM
G CHRISTIANSEN
S BIRKELUND
A1
Journal Article
in
PROTEOMICS
2002
The calcium-binding protein p54/NEFA is a novel luminal resident of medial Golgi cisternae that traffics independently of mannosidase II
Valérie M Morel-Huaux
Marc Pypaert
Sandrine Wouters
Alan M Tartakoff
Ulrich Jurgan
Kris Gevaert
Pierre J Courtoy
A1
Journal Article
in
EUROPEAN JOURNAL OF CELL BIOLOGY
2002
The expression, processing and localization of polymorphic membrane proteins in Chlamydia pneumoniae strain CWL029.
BB VANDAHL
AS PEDERSEN
Kris Gevaert
A HOLM
Joël Vandekerckhove
G CHRISTIANSEN
S BIRKELUND
A1
Journal Article
in
BMC MICROBIOLOGY
2002
The serine protease Omi/HtrA2 is released from mitochondria during apoptosis. Omi interacts with caspase-inhibitor XIAP and induces enhanced caspase activity.
Geert van Loo
Marjan Van Gurp
Bart Depuydt
SM SRINIVASULA
I RODRIGUEZ
ES ALNEMRI
Kris Gevaert
Joël Vandekerckhove
Wim Declercq
Peter Vandenabeele
A1
Journal Article
in
CELL DEATH AND DIFFERENTIATION
2002
Tumor necrosis factor-induced modulation of glyoxalase I activities through phosphorylation by PKA results in cell death and is accompanied by the formation of a specific methyl glyoxal-derived AGE.
Franky Van Herreweghe
JQ MAO
F CHAPLEN
Johan Grooten
Kris Gevaert
Joël Vandekerckhove
Katia Vancompernolle
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2002
2001
A novel receptor-mediated regulation mechanism of type I inositol polyphosphate 5-phosphatase by calcium/calmodulindependent protein kinase II phosphorylation.
D COMMUNI
Kris Gevaert
Hans Demol
Joël Vandekerckhove
C ERNEUX
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2001
Cdc42 induces filopodia by promoting the formation of an IRSp53: Mena complex.
S KRUGMANN
I JORDENS
Kris Gevaert
M DRIESSENS
Joël Vandekerckhove
A HALL
A1
Journal Article
in
CURRENT BIOLOGY
2001
Endonuclease G: a mitochondrial protein released in apoptosis and involved in caspaseindependent DNA degradation
Geert van Loo
Peter Schotte
Marjan Van Gurp
Hans Demol
B HOORELBEKE
Kris Gevaert
I RODRIGUEZ
A RUIZ-CARRILLO
Joël Vandekerckhove
Wim Declercq
et al.
A1
Journal Article
in
CELL DEATH AND DIFFERENTIATION
2001
Protein identification based on matrix assisted laser desorption/ionization-post source decay-mass spectrometry.
Kris Gevaert
Hans Demol
Lennart Martens
B HOORELBEKE
Magda Puype
M GOETHALS
Jozef Van Damme
Stefaan De Boeck
Joël Vandekerckhove
A1
Journal Article
in
ELECTROPHORESIS
2001
Proteome analysis of the Chlamydia pneumoniae elementary body.
BB VANDAHL
S BIRKELUND
Hans Demol
B HOORELBEKE
G CHRISTIANSEN
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
ELECTROPHORESIS
2001
Rac/Cdc42 and p65PAK regulate the microtubule-destabilizing protein stathmin through phosphorylation at serine 16.
H DAUB
Kris Gevaert
Joël Vandekerckhove
A SOBEL
A HALL
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2001
Time-dependent expression and processing of a hypothetical protein of possible importance for regulation of the Chlamydia pneumoniae developmental cycle.
BB VANDAHL
Kris Gevaert
Hans Demol
B HOORELBEKE
A HOLM
Joël Vandekerckhove
G CHRISTIANSEN
S BIRKELUND
A1
Journal Article
in
ELECTROPHORESIS
2001
2000
A fast and convenient MALDI-MS based proteomic approach: identification of components scaffolded by the actin cytoskeleton of activated human thrombocytes.
Kris Gevaert
L EGGERMONT
Hans Demol
Joël Vandekerckhove
A1
Journal Article
in
JOURNAL OF BIOTECHNOLOGY
2000
A plant plasma membrane H+-ATPase expressed in yeast is activated by phosphorylation at its penultimate residue and binding of 14-3-3 regulatory proteins in the absence of fusicoccin.
O MAUDOUX
H BATOKO
C OECKING
Kris Gevaert
Joël Vandekerckhove
M BOUTRY
P MORSOMME
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2000
Protein identification methods in proteomics.
Kris Gevaert
Joël Vandekerckhove
A1
Journal Article
in
ELECTROPHORESIS
2000
Targeting of aminopeptidase I to the yeast vacuole ts mediated by Ssa1p, a cytosolic member of the 70-kDa stress protein family.
E SILLES
MJ MAZON
Kris Gevaert
M GOETHALS
Joël Vandekerckhove
R LEBER
IV SANDOVAL
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2000
Techniques for sample preparation including methods for concentrating peptide samples
Kris Gevaert
Tony Houthaeve
Joël Vandekerckhove
Bookchapter
in
Proteomics in functional genomics : protein structure analysis
2000
1998
A peptide concentration and purification method for protein characterization in the subpicomole range using matrix assisted laser desorption/ionization postsource decay (MALDI-PSD) sequencing
Kris Gevaert
Hans Demol
Tatyana Sklyarova
Joël Vandekerckhove
T HOUTHAEVE
A1
Journal Article
in
ELECTROPHORESIS
1998
Sample preparation procedures for ultrasensitive protein identification by PSD-MALDI-TOF mass spectrometry
Kris Gevaert
H DE MOL
Magda Puype
T HOUTHAEYE
Stefaan De Boeck
J VANDEKERCHKHOVE
A1
Journal Article
in
JOURNAL OF PROTEIN CHEMISTRY
1998
1997
Novel techniques for identification and characterization of proteins loaded on gels in femtomole amounts.
Kris Gevaert
Hans Demol
Jean-Luc Verschelde
J VANDAMME
S DEBOECK
Joël Vandekerckhove
A1
Journal Article
in
JOURNAL OF PROTEIN CHEMISTRY
1997
Peptides adsorbed on reverse-phase chromatographic beads as targets for femtomole sequencing by post-source decay matrix assisted laser desorption ionization-reflectron time of flight mass spectrometry (MALDI-RETOF-MS).
Kris Gevaert
Hans Demol
Magda Puype
Daniël Broekaert
Stefaan De Boeck
Tony Houthaeve
Joël Vandekerckhove
A1
Journal Article
in
ELECTROPHORESIS
1997
1996
Structural analysis and identification of gel-purified proteins, available in the femtomole range, using a novel computer program for peptide sequence assignment, by matrix-assisted laser desorption ionization reflectron time-of-flight mass spectrometry.
Kris Gevaert
JL VERSCHELDE
Magda Puype
J VANDAMME
M GOETHALS
S DEBOECK
Joël Vandekerckhove
A1
Journal Article
in
ELECTROPHORESIS
1996
1995
An agarose-based gel-concentration system for microsequence and mass spectrometric characterization of proteins previously purified in polyacrylamide gels starting at low picomole levels.
MH RIDER
Magda Puype
J VANDAMME
Kris Gevaert
S DEBOECK
J DALAYER
HH RASMUSSEN
JE CELIS
Joël Vandekerckhove
A1
Journal Article
in
EUROPEAN JOURNAL OF BIOCHEMISTRY
1995