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Onderzoeker
Kim De Paepe
Profiel
Projecten
Publicaties
Activiteiten
Prijzen & Erkenningen
55
Resultaten
2024
Methanogenic archaea quantification in the human gut microbiome with F420 autofluorescence-based flow cytometry
Yorick Minnebo
Kim De Paepe
Ruben Props
Tim Lacoere
Nico Boon
Tom Van de Wiele
A2
Artikel in een tijdschrift
in
APPLIED MICROBIOLOGY (BASEL)
2024
Resource-efficient nitrogen removal from source-separated urine with partial nitritation/anammox in a membrane-aerated biofilm reactor
Marijn J. Timmer
Jolien De Paepe
Tim Van Winckel
Marc Spiller
Irina Spacova
Kim De Paepe
Isabel Pintelon
Sarah Lebeer
Winnok H. De Vos
Christophe Lasseur
et al.
A2
Artikel in een tijdschrift
in
ACS ES&T ENGINEERING
2024
2023
A microbial world of difference : from unravelling individualising gut microbial characteristics to its applications in novel in vitro research
Yorick Minnebo
Tom Van de Wiele
Kim De Paepe
Proefschrift
2023
Eating patterns contribute to shaping the gut microbiota in the mucosal simulator of the human intestinal microbial ecosystem
Yorick Minnebo
Kim De Paepe
Jeroen Raes
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
FEMS MICROBIOLOGY ECOLOGY
2023
Exploring the small intestinal microbiota : optimization of an in vitro gut model
Karen Delbaere
Ludovica Marinelli
Jozefien Wellekens
Kim De Paepe
Tom Van de Wiele
C3
Conferentie
2023
Gut microbiota response to in vitro transit time variation is mediated by microbial growth rates, nutrient use efficiency and adaptation to in vivo transit time
Yorick Minnebo
Karen Delbaere
Valerie Goethals
Jeroen Raes
Tom Van de Wiele
Kim De Paepe
A1
Artikel in een tijdschrift
in
MICROBIOME
2023
Starch-entrapped microspheres enhance gut microbiome-mediated anti-obesity effects of resistant starch in high-fat diet induced obese C57BL/ 6J mice
Shaokang Wang
Kim De Paepe
Tom Van de Wiele
Xiong Fu
Shujun Wang
Bin Zhang
Qiang Huang
A1
Artikel in een tijdschrift
in
FOOD RESEARCH INTERNATIONAL
2023
2022
Impaired mucosal homeostasis in short-term fiber deprivation is due to reduced mucus production rather than overgrowth of mucus-degrading bacteria
Annelieke Overbeeke
Michaela Lang
Bela Hausmann
Margarete Watzka
Georgi Nikolov
Jasmin Schwarz
Gudrun Kohl
Kim De Paepe
Kevin Eislmayr
Thomas Decker
et al.
A1
Artikel in een tijdschrift
in
NUTRIENTS
2022
In vitro triple coculture with gut microbiota from spondyloarthritis patients is characterized by inter-individual differences in inflammatory responses
Annelore Beterams
Marta Calatayud Arroyo
Kim De Paepe
Ann-Sophie De Craemer
Dirk Elewaut
Koen Venken
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
SCIENTIFIC REPORTS
2022
Postbiotics and their health modulatory biomolecules
Emma Scott
Kim De Paepe
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
BIOMOLECULES
2022
2021
Aberrant gut-microbiota-immune-brain axis development in premature neonates with brain damage
David Seki
Margareta Mayer
Bela Hausmann
Petra Pjevac
Vito Giordano
Katharina Goeral
Lukas Unterasinger
Katrin Klebermass-Schrehof
Kim De Paepe
Tom Van de Wiele
et al.
A1
Artikel in een tijdschrift
in
CELL HOST & MICROBE
2021
Efficacy and safety of spore-forming probiotics in the treatment of functional dyspepsia : a pilot randomised, double-blind, placebo-controlled trial
Lucas Wauters
Helena Slaets
Kim De Paepe
Matthias Ceulemans
Suzan Wetzels
Karlien Geboers
Joran Toth
Wannes Thys
Raf Dybajlo
Daan Walgraeve
et al.
A1
Artikel in een tijdschrift
in
LANCET GASTROENTEROLOGY & HEPATOLOGY
2021
Mucin as a functional niche is a more important driver of in vitro gut microbiota composition and functionality than Akkermansia muciniphila supplementation
Florence Van Herreweghen
Kim De Paepe
Massimo Marzorati
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
2021
Multi-targeted properties of the probiotic saccharomyces cerevisiae CNCM I-3856 against enterotoxigenic escherichia coli (ETEC) H10407 pathogenesis across human gut models
Charlène Roussel
Kim De Paepe
Wessam Galia
Jana De Bodt
Sandrine Chalancon
Sylvain Denis
Francoise Leriche
Pascal Vandekerkove
Nathalie Ballet
Stephanie Blanquet-Diot
et al.
A1
Artikel in een tijdschrift
in
GUT MICROBES
2021
Nutrient load acts as a driver of gut microbiota load, community composition and metabolic functionality in the simulator of the human intestinal microbial ecosystem
Yorick Minnebo
Kim De Paepe
Jeroen Raes
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
FEMS MICROBIOLOGY ECOLOGY
2021
Oral and gut microbial carbohydrate-active enzymes landscape in health and disease
Stanley Omondi Onyango
John Juma
Kim De Paepe
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
FRONTIERS IN MICROBIOLOGY
2021
Probing health effects of microbiome-modulating strategies with advanced in vitro gut simulation technology
Kim De Paepe
C3
Conferentie
2021
Starch microspheres entrapped with chitosan delay in vitro fecal fermentation and regulate human gut microbiota composition
Shaokang Wang
Kim De Paepe
Tom Van de Wiele
Xiong Fu
Yang Yuan
Bin Zhang
Qiang Huang
A1
Artikel in een tijdschrift
in
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
2021
Ultra-high pressure treatment controls in vitro fecal fermentation rate of insoluble dietary fiber from Rosa roxburghii tratt pomace and induces butyrogenic shifts in microbiota composition
Shaokang Wang
Jie Xia
Kim De Paepe
Bin Zhang
Xiong Fu
Qiang Huang
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
2021
Versatile human in vitro triple coculture model coincubated with adhered gut microbes reproducibly mimics pro-inflammatory host-microbe interactions in the colon
Annelore Beterams
Kim De Paepe
Laure Maes
India Jane Wise
Herlinde De Keersmaecker
Andreja Rajkovic
Debby Laukens
Tom Van de Wiele
Marta Calatayud Arroyo
A1
Artikel in een tijdschrift
in
FASEB JOURNAL
2021
Versatile human in vitro triple coculture model coincubated with adhered gut microbes reproducibly mimics pro-inflammatory host-microbe interactions in the colon
Annelore Beterams
Kim De Paepe
Laure Maes
India Jane Wise
Herlinde De Keersmaecker
Andreja Rajkovic
Debby Laukens
Tom Van de Wiele
Marta Calatayud Arroyo
A1
Artikel in een tijdschrift
in
FASEB JOURNAL
2021
2020
Bio-electrochemical COD removal for energy-efficient, maximum and robust nitrogen recovery from urine through membrane aerated nitrification
Jolien De Paepe
Kim De Paepe
Francesc Gòdia
Korneel Rabaey
Siegfried E. Vlaeminck
Peter Clauwaert
A1
Artikel in een tijdschrift
in
WATER RESEARCH
2020
Combining (bio)electrochemical processes and nitrification for urine recycling in Space
Jolien De Paepe
Maria Celeste Gritti
Kim De Paepe
Francesc Gòdia
Korneel Rabaey
Siegfried Vlaeminck
Peter Clauwaert
C3
Conferentie
2020
Development and validation of the simulator of the Canine Intestinal Microbial Ecosystem (SCIME)
Cindy Duysburgh
Wendy Ossieur
Kim De Paepe
Pieter Van den Abbeele
Ramiro Vichez-Vargas
Marius Vital
Dietmar H. Pieper
Tom Van de Wiele
Myriam Hesta
Sam Possemiers
et al.
A1
Artikel in een tijdschrift
in
JOURNAL OF ANIMAL SCIENCE
2020
Dietary emulsifiers alter composition and activity of the human gut microbiota in vitro, irrespective of chemical or natural emulsifier origin
Lisa Miclotte
Chris Callewaert
Kim De Paepe
Leen Rymenans
Jeroen Raes
Andreja Rajkovic
John Van Camp
Tom Van de Wiele
Preprint
2020
Dietary emulsifiers alter composition and activity of the human gut microbiota in vitro, irrespective of chemical or natural emulsifier origin
Lisa Miclotte
Kim De Paepe
Leen Rymenans
Chris Callewaert
Jeroen Raes
Andreja Rajkovic
John Van Camp
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
FRONTIERS IN MICROBIOLOGY
2020
Gut microbiota generation of protein-bound uremic toxins and related metabolites is not altered at different stages of chronic kidney disease see
Tessa Gryp
Kim De Paepe
Raymond Vanholder
Frederiek-Maarten Kerckhof
Wim Van Biesen
Tom Van de Wiele
Francis Verbeke
Marijn Speeckaert
Marie Joossens
Marie Madeleine Couttenye
et al.
A1
Artikel in een tijdschrift
in
KIDNEY INTERNATIONAL
2020
Membrane aerated nitrification preceded by bio-anodic COD removal yields maximum nitrogen recovery from urine
Jolien De Paepe
Kim De Paepe
Francesc Gòdia
Korneel Rabaey
Siegfried Vlaeminck
Peter Clauwaert
C3
Conferentie
2020
Microbial succession during wheat bran fermentation and colonisation by human faecal microbiota as a result of niche diversification
Kim De Paepe
Joran Verspreet
Christophe M. Courtin
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
ISME JOURNAL
2020
Spatial and temporal modulation of enterotoxigenic E. coli H10407 pathogenesis and interplay with microbiota in human gut models
Charlène Roussel
Kim De Paepe
Wessam Galia
Jana De Bodt
Sandrine Chalancon
Francoise Leriche
Nathalie Ballet
Sylvain Denis
Monique Alric
Tom Van de Wiele
et al.
A1
Artikel in een tijdschrift
in
BMC BIOLOGY
2020
2019
An Acetobacterium strain isolated with metallic iron as electron donor enhances iron corrosion by a similar mechanism as Sporomusa sphaeroides
Jo Philips
Eva Monballyu
Steffen Georg
Kim De Paepe
Antonin Prévoteau
Korneel Rabaey
Jan Arends
A1
Artikel in een tijdschrift
in
FEMS MICROBIOLOGY ECOLOGY
2019
Concentrations of p-cresyl - and indoxyl sulfate and their precursors in different stages of chronic kidney disease : from feces to urine
Tessa Gryp
Kim De Paepe
Frederiek-Maarten Kerckhof
Wim Van Biesen
Raymond Vanholder
Marie Joossens
Mario Vaneechoutte
Griet Glorieux
C3
Conferentie
2019
Dietary nutrient concentration acts as a driver of microbial load and diversity
Yorick Minnebo
Kim De Paepe
Karen Delbaere
Tom Van de Wiele
C3
Conferentie
2019
Experimental models to study intestinal microbes-mucus interactions in health and disease
Lucie Etienne-Mesmin
Benoit Chassaing
Mickael Desvaux
Kim De Paepe
Raphaele Gresse
Thomas Sauvaitre
Evelyne Forano
Tom Van de Wiele
Stephanie Schuller
Nathalie Juge
et al.
A1
Artikel in een tijdschrift
in
FEMS MICROBIOLOGY REVIEWS
2019
Feeding frequency and nutrient availability as drivers of microbial load
Yorick Minnebo
Kim De Paepe
Tom Van de Wiele
C3
Conferentie
2019
Isolation of wheat bran-colonizing and metabolizing species from the human fecal microbiota
Kim De Paepe
Joran Verspreet
Mohammad Naser Rezaei
Silvia Hidalgo Martinez
Filip Meysman
Davy Van de Walle
Koen Dewettinck
Jeroen Raes
Christophe Courtin
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
PEERJ
2019
Modification of wheat bran particle size and tissue composition affects colonisation and metabolism by human faecal microbiota
Kim De Paepe
Joran Verspreet
Mohammad Naser Rezaei
Silvia Hidalgo Martinez
Filip Meysman
Davy Van de Walle
Koen Dewettinck
Christophe M Courtin
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
FOOD & FUNCTION
2019
Wheat bran thermal treatment in a hot air oven does not affect the fermentation and colonisation process by human faecal microbiota
Kim De Paepe
Joran Verspreet
Christophe M. Courtin
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
JOURNAL OF FUNCTIONAL FOODS
2019
2018
A novel Shewanella isolate enhances corrosion by using metallic iron as the electron donor with fumarate as the electron acceptor
Jo Philips
Niels Van den Driessche
Kim De Paepe
Antonin Prévoteau
Jeffrey A Gralnick
Jan Arends
Korneel Rabaey
A1
Artikel in een tijdschrift
in
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
2018
Breadboard verification of a novel technology train to recycle nutrients and water from urine for human spaceflight
Jolien De Paepe
Ralph EF Lindeboom
Marjolein Vanoppen
Kim De Paepe
Wout Coessens
Dries Demey
Brigitte Lamaze
Arne Verliefde
Peter Clauwaert
Siegfried Vlaeminck
C3
Conferentie
2018
Combination of two simulators of the human gut TIM & SHIME for an in-depth understanding of the behaviour of enterotoxigenic E. coli in the digestive environment
Charène Roussel
Kim De Paepe
Wessam Galia
Jana De Bodt
Sylvain Denis
Sandrine Chalancon
Monique Alric
Françoise Leriche
Tom Van de Wiele
Stéphanie Blanquet-Diot
C3
Conferentie
2018
Introducing insoluble wheat bran as a gut microbiota niche in an in vitro dynamic gut model stimulates propionate and butyrate production and induces colon region specific shifts in the luminal and mucosal microbial community
Kim De Paepe
Joran Verspreet
Kristin Verbeke
Jeroen Raes
Christophe M. Courtin
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
ENVIRONMENTAL MICROBIOLOGY
2018
Mucin degradation niche as a driver of microbiome composition and Akkermansia muciniphila abundance in a dynamic gut model is donor independent
Florence Van Herreweghen
Kim De Paepe
Hugo Roume
Frederiek-Maarten Kerckhof
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
FEMS MICROBIOLOGY ECOLOGY
2018
Refinery and concentration of nutrients from urine with electrodialysis enabled by upstream precipitation and nitrification
Jolien De Paepe
Ralph Lindeboom
Marjolein Vanoppen
Kim De Paepe
Dries Demey
Wout Coessens
Brigitte Lamaze
Arne Verliefde
Peter Clauwaert
Siegfried Vlaeminck
A1
Artikel in een tijdschrift
in
WATER RESEARCH
2018
Specific members of the human gut microbiome colonize wheat bran-based dietary platforms, thus driving the production of health-related microbial metabolites
Pieter Van den Abbeele
Kim De Paepe
Massimo Marzorati
Tom Van de Wiele
C3
Conferentie
2018
Water cycling for regenerative life support systems : MELiSSA's development of an integrated biophysicochemical approach
Siegfried Vlaeminck
Ralph Lindeboom
Jolien De Paepe
Dries Demeyere
Marjolein Vanoppen
Alonso Farinas
Wout Coessens
Marlies Christiaens
Chiara Ilgrande
Kim De Paepe
et al.
C3
Conferentie
2018
Wheat bran as a driver of gut microbiota niche diversification and spatial organisation
Kim De Paepe
Tom Van de Wiele
Proefschrift
2018
Wheat bran as a driver of gut microbiota niche diversification and spatial organisation
Kim De Paepe
Frederiek-Maarten Kerckhof
Joran Verspreet
Christophe M Courtin
Kristin Verbeke
Jeroen Raes
Tom Van de Wiele
C3
Conferentie
2018
2017
Dynamics and inter-individual differences determine the outcome of wheat bran colonization by the human gut microbiome in batch incubations and in the Simulator of the Human Intestinal Microbial Ecosystem (SHIME)
Kim De Paepe
C3
Conferentie
2017
Inter-individual differences determine the outcome of wheat bran colonization by the human gut microbiome
Kim De Paepe
Frederiek-Maarten Kerckhof
Joran Verspreet
Christophe M Courtin
Tom Van de Wiele
A1
Artikel in een tijdschrift
in
ENVIRONMENTAL MICROBIOLOGY
2017
Isolation and characterization of novel electrotrophic microorganisms using metallic iron as sole electron donor
Jo Philips
Eva Monballyu
Steffen Georg
Niels Van Den Driessche
Kim De Paepe
Korneel Rabaey
Jan Arends
C3
Conferentie
2017
Isolation and characterization of novel electrotrophic microorganisms using metallic iron as sole electron donor
Jo Philips
Eva Monballyu
Steffen Georg
Niels Van Den Driessche
Kim De Paepe
Korneel Rabaey
Jan Arends
C3
Conferentie
2017
Novel Acetobacterium malicum strain capable of using metallic iron as sole electron donor
Jo Philips
Eva Monballyu
Steffen Georg
Kim De Paepe
Korneel Rabaey
Jan Arends
C3
Conferentie
2017
2013
Probiotic cleaning: a novel way of hygienizing the indoor environment
Chris Callewaert
Kim De Paepe
Tom Van de Wiele
Nico Boon
C3
Conferentie
2013
2012
Architecture in red clover (Trifolium pratense)
Annemie Van Minnebruggen
Antje Rohde
Isabel Roldán-Ruiz
Kim De Paepe
Judith Van Dingenen
Erik Van Bockstaele
Gerda Cnops
C3
Conferentie
2012