Research Explorer

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Researcher

Kevin Vanneste

Publications & Research Data

Awards & Distinctions

31 Results

2026

Recovery and microbial host assignment of mobile genetic elements in complex microbiomes : insights from a spiked gut sample

Bram BloemenMaud DelvoyeStefan HoffmanKathleen MarchalKevin VannesteMarie-Alice FraitureNancy H. C. RoosensSigrid C. J. De Keersmaecker

A1 Journal Article in MSYSTEMS

2025

Detection of Bacillus production strains and contaminants in food enzyme products

Alexander Van UffelenAndres Posadas YabarMarie-Alice FraitureNancy H. C. RoosensSigrid C. J. De KeersmaeckerKathleen MarchalKevin Vanneste

A2 Journal Article in FOOD CHEMISTRY: MOLECULAR SCIENCES

2023

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

Bram BloemenMathieu GandKevin VannesteKathleen MarchalNancy H. C. RoosensSigrid C. J. De Keersmaecker

A1 Journal Article in SCIENTIFIC REPORTS

Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

Stéphanie NouwsBavo VerhaegenSarah DenayerFlorence CrombéDenis PiérardBert BogaertsKevin VannesteKathleen MarchalNancy H. C. RoosensSigrid C. J. De Keersmaecker

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

2022

Metagenomics to detect and characterize viruses in food samples at genome level? Lessons learnt from a norovirus study

Florence BuytaersBavo VerhaegenMathieu GandJolien D'aesKevin VannesteNancy H. C. RoosensKathleen MarchalSarah DenayerSigrid C. J. De Keersmaecker

A1 Journal Article in FOODS

2021

Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak

Florence BuytaersAssia SaltykovaWesley MattheusValeska LaisnezBavo VerhaegenNancy H. C. RoosensKevin VannesteNaiima HammamiBrigitte PochetVera Cantaert et al.

A1 Journal Article in MICROBIAL GENOMICS

Case report : multidrug resistant Raoultella ornithinolytica in a septicemic calf

Mathilde PasKevin VannesteJade BokmaLaura Van DriesscheSigrid C. J. De KeersmaeckerNancy H. RoosensFreddy HaesebrouckFilip BoyenBart Pardon

A1 Journal Article in FRONTIERS IN VETERINARY SCIENCE

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Bert BogaertsRaf WinandJulien Van BraekelStefan HoffmanNancy H. C. RoosensSigrid C. J. De KeersmaeckerKathleen MarchalKevin Vanneste

A1 Journal Article in MICROBIAL GENOMICS

Retrospective evaluation of routine whole genome sequencing of Mycobacterium tuberculosis at the Belgian National Reference Center, 2019

Karine SoetaertPieter-Jan CeyssensSamira BoarbiBert BogaertsThomas DelcourtKevin VannesteSigrid C.J. De KeersmaeckerNancy H.C. RoosensAlexandra VodolazkaiaMarina Mukovnikova et al.

A1 Journal Article in ACTA CLINICA BELGICA

Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies

Florence BuytaersAssia SaltykovaSarah DenayerBavo VerhaegenKevin VannesteNancy H. C. RoosensDenis PierardKathleen MarchalSigrid C. J. De Keersmaecker

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Whole genome sequencing provides an added value to the investigation of staphylococcal food poisoning outbreaks

Stéphanie NouwsBert BogaertsBavo VerhaegenSarah DenayerLasse LaeremansKathleen MarchalNancy H. C. RoosensKevin VannesteSigrid C. J. De Keersmaecker

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Whole-genome sequencing-based antimicrobial resistance characterization and phylogenomic investigation of 19 multidrug-resistant and extended-spectrum beta-lactamase-positive escherichia coli strains collected from hospital patients in Benin in 2019

Carine Laurence YehouenouBert BogaertsSigrid C. J. De KeersmaeckerNancy H. C. RoosensKathleen MarchalEdmond TchiakpeDissou AffolabiAnne SimonFrancis Moise DossouKevin Vanneste et al.

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

2020

Development of an NGS-based workflow for improved monitoring of circulating plasmids in support of risk assessment of antimicrobial resistance gene dissemination

Bas BerbersPieter-Jan CeyssensPierre BogaertsKevin VannesteNancy RoosensKathleen MarchalSigrid C.J. De Keersmaecker

A1 Journal Article in ANTIBIOTICS-BASEL

First detection of a plasmid located carbapenem resistant bla(VIM-1) gene in E. coli isolated from meat products at retail in Belgium in 2015

Cristina Garcia-GraellsBas BerbersBavo VerhaegenKevin VannesteKathleen MarchalNancy H. C. RoosensNadine BotteldoornSigrid C. J. De Keersmaecker

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates

Stephanie NouwsBert BogaertsBavo VerhaegenSarah DenayerDenis PierardKathleen MarchalNancy H. C. RoosensKevin VannesteSigrid C. J. De Keersmaecker

A1 Journal Article in SCIENTIFIC REPORTS

2017

Isolation of the highly pathogenic and zoonotic agent Burkholderia pseudomallei from a pet green iguana (Iguana iguana) in Belgium

Tom HellebuyckPierre WattiauFilip BoyenIlse MoeremansNancy RoossensKevin VannesteAn GarmynVeronique SaeyFrank PasmansFreddy Haesebrouck

Revisiting ancestral polyploidy in plants

Colin RuprechtRolf LohausKevin VannesteMarek MutwilZoran NikoloskiYves Van de PeerStaffan Persson

A1 Journal Article in SCIENCE ADVANCES

2016

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

Jeanine L OlsenPierre RouzéBram VerhelstYao-Cheng LinTill BayerJonas CollenEmanuela DattoloEmanuele De PaoliSimon DittamiFlorian Maumus et al.

A1 Journal Article in NATURE

2015

Horsetails are ancient polyploids : evidence from Equisetum giganteum

Kevin VannesteLieven SterckAlexander Andrew MyburgYves Van de PeerEshchar Mizrachi

A1 Journal Article in PLANT CELL

The genome sequence of the orchid Phalaenopsis equestris

Jing CaiXin LiuKevin VannesteSebastian ProostWen-Chieh TsaiKe-Wei LiuLi-Jun ChenYing HeQing XuChao Bian et al.

A1 Journal Article in NATURE GENETICS

2014

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary

Kevin VannesteGuy BaeleSteven MaereYves Van de Peer

A1 Journal Article in GENOME RESEARCH

Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution

Kevin VannesteSteven MaereYves Van de Peer

A1 Journal Article in PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The evolutionary significance of gene and genome duplications

Kevin VannesteYves Van de PeerSteven Maere

The genome of Eucalyptus grandis

Alexander A MyburgDario GrattapagliaGerald A TuskanUffe HellstenRichard D HayesJane GrimwoodJerry JenkinsErika LindquistHope TiceDiane Bauer et al.

A1 Journal Article in NATURE

The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants

Astrid GadeyneClara Sánchez-RodríguezSteffen VannesteSimone Di RubboHenrik ZauberKevin VannesteJelle Van LeeneNancy De WinneDominique EeckhoutGeert Persiau et al.

A1 Journal Article in CELL

2013

Inference of genome duplications from age distributions revisited

Kevin VannesteYves Van de PeerSteven Maere

A1 Journal Article in MOLECULAR BIOLOGY AND EVOLUTION

Recombinant antibody production in Arabidopsis seeds triggers an unfolded protein response

Kirsten De WildeSylvie De BuckKevin VannesteAnna Depicker

A1 Journal Article in PLANT PHYSIOLOGY

The Norway spruce genome sequence and conifer genome evolution

Björn NystedtNathaniel R StreetAnna WetterbomAndrea ZuccoloYao-Cheng LinDouglas G ScofieldFrancesco VezziNicolas DelhommeStefania GiacomelloAndrey Alexeyenko et al.

A1 Journal Article in NATURE

2012

Expansive evolution of the TREHALOSE-6-PHOSPHATE PHOSPHATASE gene family in Arabidopsis

Lies VandesteeneLorena Lopez GalvisKevin VannesteRegina FeilSteven MaereWillem LammensFilip RollandJohn E LunnNelson AvonceTom Beeckman et al.

A1 Journal Article in PLANT PHYSIOLOGY

Gamma paleohexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification

Dries VekemansSebastian ProostKevin VannesteHeleen CoenenTom ViaenePhilip RuelensSteven MaereYves Van de PeerKoen Geuten

A1 Journal Article in MOLECULAR BIOLOGY AND EVOLUTION

Reconstruction of ancestral metabolic enzymes reveals molecular mechanisms underlying evolutionary innovation through gene duplication

Karin VoordeckersChris A. BrownKevin VannesteElisa van der ZandeArnout VoetSteven MaereKevin J. Verstrepen

A1 Journal Article in PLOS BIOLOGY