Digital pathology as a proxy for molecular profiling of prostate tumors

Cohort Analysis to identify metastatic prostate cancer drivers.

Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety

Development of a data-intensive centralized system for surveillance and outbreak investigation of bacterial pathogens using whole-genome sequencing

“Development of bioinformatics shotgun metagenomics approaches in support of public health for the next sequencing era”

Development of novel genomics methods for the diagnosis, surveillance, control and characterisation of potentially harmful organisms in an applied public health context

Development of shotgun METAgenoMics apprOaches in suppoRt of Public Health fOr the next Sequencing Era (METAMORPHOSE))

Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety

Doctoral project Bram Weytjens

Doctoral project Camilo Perez Romero

Doctoral project Dries De Maeyer

Doctoral project Johannes Berbers

Doctoral project Luis Patricio Puchaicela Huaca

Doctoral project Marie Van Hecke

Doctoral project Mathieu Gand

Doctoral project Sergio Pulido Tamayo

Doctoral project Simon Isphording

Doctoral project Stéphanie Nouws

Doctoral project Véronique Wuyts

Fast Antimicrobial Resistance and Mobile-Element Detection using shotgun metagenomics for animal and human (on-site) tests’

Leveraging comprehensive cancer systems genetic data to uncover the modus operandi of driver mutations

Network-based and integrative approaches in plant systems biology

Network-based data analytics for pathway driven target discovery

Doctoral project Lieven Verbeke

Doctoral project Mushthofa Mushthofa

A data-driven integrative framework for the identification of cancer driver pathways and their mode of action.

AI applications in bioinformatics

Bioinformatics: from nucleotids to networks (N2N)

Deep learning models for predicting molecular tumor properties directly from Whole Slide images

Forwarding precision oncology by integrating cohort-derived molecular and clinical information.

Genetic adaption of bacterial catabolic pathways for pesticide biodegradation: role of historical contingency

Leveraging comprehensive cancer systems genetic data to uncover the modus operandi of driver mutations

More rapid and accurate identification of (zoonotic) Salmonella serotypes subjected to official control in poultry and pork

Network-based approaches for the identification and mode of action determination of anti-bacterial agents

Network-guided analysis of genotype and expression phenotype data

Systems genetics: studying clonal evolution

The importance of epistasis and network rewiring in determining the adaptive outcome of bacterial populations subjected to antibiotic gradients