Research Explorer

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Researcher

Elien Vandermarliere

Awards & Distinctions

29 Results

2022

Sensitive and specific spectral library searching with CompOmics Spectral library Searching tool and Percolator

Genet Abay ShiferawRalf GabrielsRobbin BouwmeesterTim Van Den BosscheElien VandermarliereLennart MartensPieter-Jan Volders

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2021

Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Morgane BoonePathmanaban RamasamyJasper ZuallaertRobbin BouwmeesterBerre Van MoerDavy MaddeleinDemet TuranNiels HulstaertHannah EeckhautElien Vandermarliere et al.

A1 Journal Article in NATURE COMMUNICATIONS

2020

COSS : a fast and user-friendly tool for spectral library searching

Genet Abay ShiferawElien VandermarliereNiels HulstaertRalf GabrielsLennart MartensPieter-Jan Volders

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Scop3P : a comprehensive resource of human phosphosites within their full context

Pathmanaban RamasamyDemet TuranNatalia TichshenkoNiels HulstaertElien VandermarliereWim VrankenLennart Martens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis

Stephanie SmithShanshuo ZhuLisa JoosIanto RobertsNatalia NikonorovaLam Dai VuElisabeth StesHyunwoo ChoAntoine LarrieuWei Xuan et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

2019

Keeping up appearances in the mumps vaccine : do antigenic differences matter?

Tessa VermeireLennart MartensSteven Van GuchtPaul RotaElien Vandermarliere

2018

Cross-linked peptide identification : a computational forest of algorithms

Sule Yilmaz-RumpfGenet Abay ShiferawJosep RayoAnastassios EconomouLennart MartensElien Vandermarliere

A1 Journal Article in MASS SPECTROMETRY REVIEWS

Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins

Sigrid GoumaTessa VermeireSteven Van GuchtLennart MartensVeronik HutseJeroen CremerPaul A RotaGeert Leroux-RoelsMarion KoopmansRob van Binnendijk et al.

A1 Journal Article in SCIENTIFIC REPORTS

The mutational landscape of MYCN, Lin28b and ALKF1174L driven murine neuroblastoma mimics human disease

Bram De WildeAnneleen BeckersSven LindnerKristina AlthoffKatleen De PreterPauline DepuydtPieter MestdaghTom SanteSteve LefeverFalk Hertwig et al.

A2 Journal Article in ONCOTARGET

The study of degradation mechanisms of glyco-engineered plant produced anti-rabies monoclonal antibodies E559 and 62-71-3

Sindisiwe G ButheleziHeini W DirrEreck ChakauyaRachel ChikwambaLennart MartensTsepo L TsekoaElien VandermarliereStoyan H Stoychev

A1 Journal Article in PLOS ONE

2017

Methods to calculate spectrum similarity

Sule Yilmaz-RumpfElien VandermarliereLennart Martens

Bookchapter in Proteome bioinformatics

Novel algorithms for two interesting challenges in proteomics : unsequenced organisms and cross-linked peptide identification

Sule Yilmaz-RumpfLennart MartensElien Vandermarliere

2016

A pipeline for differential proteomics in unsequenced species

Sule Yilmaz-RumpfBjorn VictorNiels HulstaertElien VandermarliereHarald BarsnesSven DegroeveSurya GuptaAdriaan StickerSarah GabriëlPierre Dorny et al.

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

An extra dimension in protein tagging by quantifying universal proteotypic peptides using targeted proteomics

Giel VandemoorteleAn StaesGiulia GonnelliNoortje SamynDelphine De SutterElien VandermarliereEvy TimmermanKris GevaertLennart MartensSven Eyckerman

A1 Journal Article in SCIENTIFIC REPORTS

Resolution of protein structure by mass spectrometry

Elien VandermarliereElisabeth StesKris GevaertLennart Martens

A1 Journal Article in MASS SPECTROMETRY REVIEWS

The Lyssavirus glycoprotein : a key to cross-immunity

Sindisiwe G ButheleziHeini W DirrEreck ChakauyaRachel ChikwambaLennart MartensTsepo L TsekoaStoyan H StoychevElien Vandermarliere

A1 Journal Article in VIROLOGY

Xilmass: a new approach toward the identification of cross-linked peptides

Sule Yilmaz-RumpfFriedel DrepperNiels HulstaertMaša ČerničKris GevaertAnastassios EconomouBettina WarscheidLennart MartensElien Vandermarliere

A1 Journal Article in ANALYTICAL CHEMISTRY

2015

A novel STAT1 mutation in a patient with pneumocystis jiroveci and chronic mucocutaneous candidiasis

Delfien BogaertMelissa DullaersJens StaalSarah GerloElien VandermarliereVeronique De BackerMaria Bordon Cueto De BraemKATHLEEN DE WAELEIsabelle MeytsLeen Moens et al.

Limited proteolysis combined with stable isotope labeling reveals conformational changes in protein (pseudo)kinases upon binding small molecules

Michela Di MicheleElisabeth StesElien VandermarliereRohit AroraJuan Astorga-WellsJonathan VandenbusscheErika van HeerdeRoman ZubarevPascal BonnetJoannes TM Linders et al.

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

PepShell : visualization of conformational proteomics data

Elien VandermarliereDavy MaddeleinNiels HulstaertElisabeth StesMichela Di MicheleKris GevaertEdgar JacobyDirk BrehmerLennart Martens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Ryanodine receptors are targeted by anti-apoptotic Bcl-X-L involving its BH4 domain and Lys87 from its BH3 domain

Tim VervlietIrma LemmensElien VandermarliereElke DecrockHristina IvanovaGiovanni MonacoVincenzo SorrentinoNael Nadif KasriLudwig MissiaenLennart Martens et al.

A1 Journal Article in SCIENTIFIC REPORTS

Scop3D : three-dimensional visualization of sequence conservation

Tessa VermeireStijn VermaereBert SchepensXavier SaelensSteven Van GuchtLennart MartensElien Vandermarliere

A1 Journal Article in PROTEOMICS

Structural investigation of B-Raf paradox breaker and inducer inhibitors

Rohit AroraMichela Di MicheleElisabeth StesElien VandermarliereLennart MartensKris GevaertErika Van HeerdeJoannes TM LindersDirk BrehmerEdgar Jacoby et al.

A1 Journal Article in JOURNAL OF MEDICINAL CHEMISTRY

2014

A novel Stat1 mutation leading to hyperphosphorylation in a patient with Pneumocystis jjiroveci and chronic mucocutaneous candidiasis

Melissa DullaersJens StaalSarah GerloElien VandermarliereV DebackerMaria Bordon Cueto De BraemK De WaeleI MeytsL MoensX Bossuyt et al.

Unraveling the specificities of the different human methionine sulfoxide reductases

Elien VandermarliereBart GhesquièreVeronique JonckheereKris GevaertLennart Martens

A1 Journal Article in PROTEOMICS

2013

Getting intimate with trypsin, the leading protease in proteomics

Elien VandermarliereMichael MuellerLennart Martens

A1 Journal Article in MASS SPECTROMETRY REVIEWS

Predicting tryptic cleavage from proteomics data using decision tree ensembles

Thomas FannesElien VandermarliereLeander SchietgatSven DegroeveLennart MartensJan Ramon

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Protein structure as a means to triage proposed PTM sites

Elien VandermarliereLennart Martens

A1 Journal Article in PROTEOMICS

Vpr content of HIV-1 virions determines infection of resting peripheral blood CD4⁺ lymphocytes

Anouk Van NuffelFrancis ImpensAnn BaeyensStijn VanheeWojciech WitkowskiElien VandermarliereHanne VanderstraetenEvelien NaessensKathleen Van LandeghemSophie Vermaut et al.