Research Explorer

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Researcher

Dimitri Boeckaerts

Awards & Distinctions

17 Results

2024

DepoScope : accurate phage depolymerase annotation and domain delineation using large language models

Robby Concha-ElokoMichiel StockBernard De BaetsYves BriersRafael SanjuánPilar Domingo-CalapDimitri Boeckaerts

A1 Journal Article in PLOS COMPUTATIONAL BIOLOGY

Hyperdimensional computing : a fast, robust, and interpretable paradigm for biological data

Michiel StockWim Van CriekingeDimitri BoeckaertsSteff TaelmanMaxime Van HaeverbekePieter DewulfBernard De Baets

A1 Journal Article in PLOS COMPUTATIONAL BIOLOGY

KlebPhaCol : a community-driven resource for Klebsiella research identified a novel gut phage order associated with the human gut

Daniela Rothschild-RodriguezKai S. LambonAgnieszka ŁątkaAna Rita CostaAnna MantzouratouClaire KingDimitri BoeckaertsElizabeth SheridanFrancesca MerrickFrancis Drobniewski et al.

Machine learning tools versus manual approach for detection of Klebsiella phage depolymerases

Ilaria De AngelisAgnieszka ŁątkaDimitri BoeckaertsBritt Van MieghemYves Briers

Prediction of Klebsiella phage-host specificity at the strain level

Dimitri BoeckaertsMichiel StockCelia Ferriol-GonzálezJesús Oteo-IglesiasRafael SanjuánPilar Domingo-CalapBernard De BaetsYves Briers

A1 Journal Article in NATURE COMMUNICATIONS

2023

Biology-based machine learning to predict phage-host specificity for the clinical phage therapist

Dimitri BoeckaertsCélia PasAgnieszka ŁątkaMichiel StockCelia Ferriol-GonzálezRafael SanjuanPilar Domingo-CalapLars FieselerBernard De BaetsYves Briers

CkP1 bacteriophage, a S16-like myovirus that recognizes Citrobacter koseri lipopolysaccharide through its long tail fibers

Hugo OliveiraSilvio SantosDiana P. PiresDimitri BoeckaertsGraca PintoRita DominguesJennifer OteroYves BriersRob LavigneMathias Schmelcher et al.

A1 Journal Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Foundation of the Belgian Society for Viruses of Microbes and meeting report of its inaugural symposium

Agnieszka ŁątkaAbram AertsenDimitri BoeckaertsBob BlasdelPieter-Jan CeyssensAbel Garcia-PinoAnnika GillisRob LavigneGipsi Lima-MendezJelle Matthijnssens et al.

A1 Journal Article in VIRUSES-BASEL

Predicting and understanding phage-host interactions with machine learning tools based on phage receptor-binding proteins

Dimitri BoeckaertsYves BriersBernard De BaetsMichiel Stock

2022

Digital phagograms : predicting phage infectivity through a multilayer machine learning approach

Cédric LoodDimitri BoeckaertsMichiel StockBernard De BaetsRob LavigneVera van NoortYves Briers

A1 Journal Article in CURRENT OPINION IN VIROLOGY

Identification of phage receptor-binding protein sequences with hidden Markov models and an extreme gradient boosting classifier

Dimitri BoeckaertsMichiel StockBernard De BaetsYves Briers

A1 Journal Article in VIRUSES-BASEL

Launch of the Belgian Society for Viruses of Microbes

Abram AerstenBob BlasdelDimitri BoeckaertsPieter-Jan CeyssensAbel Garcia-PinoAnnika GillisAgnieszka ŁątkaRob LavigneGipsi Lima-MendezJelle Matthijnssens et al.

Machine learning to assist in large-scale, activity-based synthetic cannabinoid receptor agonist screening of serum samples

Liesl JanssensDimitri BoeckaertsSimon HudsonDaria MorozovaAnnelies CannaertDavid M. WoodCaitlin WolfeBernard De BaetsMichiel StockPaul, I Dargan et al.

A1 Journal Article in CLINICAL CHEMISTRY

The specific capsule depolymerase of phage PMK34 sensitizes Acinetobacter baumannii to serum killing

Karim Abdelkader Soufi AbdelkaderDiana Gutierrez FernandezAgnieszka ŁątkaDimitri BoeckaertsZuzanna Drulis-KawaBjorn CrielHans GerstmansAmal SafaanAhmed S. KhairallaYasser Gaber et al.

A1 Journal Article in ANTIBIOTICS-BASEL

Two novel approaches to identify phage receptor-binding protein sequences

Dimitri BoeckaertsMichiel StockBernard De BaetsYves Briers

2021

Crowdsourced mapping of unexplored target space of kinase inhibitors

Anna CichonskaBalaguru RavikumarRobert J. AllawayFangping WanSungjoon ParkOlexandr IsayevShuya LiMichael MasonAndrew LambZiaurrehman Tanoli et al.

A1 Journal Article in NATURE COMMUNICATIONS

Predicting bacteriophage hosts based on sequences of annotated receptor-binding proteins

Dimitri BoeckaertsMichiel StockBjorn CrielHans GerstmansBernard De BaetsYves Briers

A1 Journal Article in SCIENTIFIC REPORTS