Research Explorer

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Researcher

Charlotte Scott

Publications & Research Data

Awards & Distinctions

88 Results

2025

Deciphering the neuroblastoma tumor microenvironment using single-cell and spatial omics

Noah BonineKatleen De PreterFranki SpelemanCharlotte Scott

Inhibiting peripheral serotonin activates liver AMPK and reduces monocyte-derived macrophages and fibrosis

Battsetseg BatchuluunTinne ThonéAndre DjalalvandiRussta FayyaziParneet DeoJulian M. YabutSara MaggioreBavo VannesteJaya GautamLogan K. Townsend et al.

U Journal Article in CELL REPORTS

Kupffer cell programming by maternal obesity triggers fatty liver disease

Hao HuangNora R. BalzerLea SeepIva SplichalovaNelli Blank-SteinMaria Francesca ViolaEliana Franco TaverasKerim AcilDiana FinkFranzisca Petrovic et al.

A1 Journal Article in NATURE

Lipid associated macrophages : origins, identities and functions in the injured liver

Federico Francesco De PontiCharlotte Scott

Spatially restricted and ontogenically distinct hepatic macrophages are required for tissue repair

Federico Francesco De PontiAnna BujkoZhuangzhuang LiuPaul CollinsSara SchuermansChristian MaueröderSeraja AmstelveenTinne ThonéLiesbet MartensJohn McKendrick et al.

A1 Journal Article in IMMUNITY

2024

A prognostic molecular signature of hepatic steatosis is spatially heterogeneous and dynamic in human liver

Andrew S. PerryNiran HadadEmeli ChatterjeeMaria Jimenez-RamosEric Farber-EgerRashedeh RoshaniLindsey K. StolzeMichael J. BettiShilin ZhaoShi Huang et al.

A1 Journal Article in CELL REPORTS MEDICINE

Host-pathogen interactions in the Plasmodium-infected mouse liver at spatial and single-cell resolution

Franziska HildebrandtMiren Urrutia IturritzaChristian ZwickerBavo VannesteNoemi Van HulElisa SemleJaclyn QuinTales PasciniSami SaarenpaaMengxiao He et al.

A1 Journal Article in NATURE COMMUNICATIONS

Implementing distinct spatial proteogenomic technologies : opportunities, challenges, and key considerations

Bram VerstappeCharlotte Scott

A1 Journal Article in CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Macrophages marc(o) the difference in liver inflammation?

Christian ZwickerCharlotte Scott

Editorial material

NBAtlas : a harmonized single-cell transcriptomic reference atlas of human neuroblastoma tumors

Noah BonineVittorio ZanzaniAnnelies Van HemelrykBavo VannesteChristian ZwickerTinne ThonéSofie RoelandtSarah-Lee BekaertJan KosterIsabelle Janoueix-Lerosey et al.

A1 Journal Article in CELL REPORTS

Osteopontin characterizes bile duct-associated macrophages and correlates with liver fibrosis severity in primary sclerosing cholangitis

Kevin De MuynckLander HeyerickFederico Francesco De PontiBart VanderborghtTim MeeseSanne Van CampenhoutLeen BaudonckEva GijbelsPedro M. RodriguesJesus M. Banales et al.

A1 Journal Article in HEPATOLOGY

SPArrOW : a flexible, interactive and scalable pipeline for spatial transcriptomics analysis

Lotte PollarisBavo VannesteBenjamin RombautArne DefauwFrank VernaillenJulien MortierWout VanhendenLiesbet MartensTinne ThonéJean-François Hastir et al.

Understanding the complex macrophage landscape in MASLD

Federico Francesco De PontiZhuangzhuang LiuCharlotte Scott

A1 Journal Article in JHEP REPORTS

2023

A harmonized single-cell transcriptomic atlas of human neuroblastoma

Noah BonineVittorio ZanzaniLiselot MusBavo VannesteChristian ZwickerTinne ThonéSofie RoelandtCécile ThirantAmira KramdiIsabelle Janoueix-Lerosey et al.

A20 is a master switch of IL-33 signalling in macrophages and determines IL-33-induced lung immunity

Aurora Holgado MuñozZhuangzhuang LiuAigerim AidarovaChristina MüllerMira HaegmanYasmine DriegeMarja KreikeCharlotte ScottInna AfoninaRudi Beyaert

A1 Journal Article in JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Kupffer cells contested as early drivers in the pathogenesis of primary sclerosing cholangitis

Kevin De MuynckBart VanderborghtFederico Francesco De PontiEva GijbelsSophie Van WeldenMartin GuilliamsCharlotte ScottAlain BeschinMathieu VinkenSander Lefere et al.

A1 Journal Article in AMERICAN JOURNAL OF PATHOLOGY

Limitations of PLX3397 as a microglial investigational tool : peripheral and off-target effects dictate the response to inflammation

Wouter ClaeysDaan VerhaegeGriet Van ImschootElien Van WonterghemLore Van AckerLaura AmelinckFederico Francesco De PontiCharlotte ScottAnja GeertsChristophe Van Steenkiste et al.

A1 Journal Article in FRONTIERS IN IMMUNOLOGY

Network analysis of large-scale ImmGen and Tabula Muris datasets highlights metabolic diversity of tissue mononuclear phagocytes

Anastasiia GainullinaDenis A. MogilenkoLi-Hao HuangHelena TodorovVipin NarangKi-Wook KimLim Sheau YngAndrew KentBaosen JiaKumba Seddu et al.

A1 Journal Article in CELL REPORTS

Studying macrophages in the murine steatotic liver using flow cytometry and confocal microscopy

Zhuangzhuang LiuPieter LouweCharlotte Scott

Bookchapter in Tissue-resident macrophages

Transient Kupffer cell depletion and subsequent replacement by infiltrating monocyte-derived cells does not alter the induction or progression of hepatocellular carcinoma

Bart VanderborghtKevin De MuynckEva GijbelsSander LefereCharlotte ScottMartin GuilliamsAlain BeschinMathieu VinkenXavier VerhelstAnja Geerts et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF CANCER

2022

A breath of fresh macrophages ameliorates inflammation in the hypoxic lung

Federico Francesco De PontiCharlotte Scott

Editorial material

Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Noah BonineTinne ThonéBavo VannesteLiselot MusCeline EveraertBram De WildeFranki SpelemanCharlotte ScottKatleen De Preter

Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Noah BonineTinne ThonéBavo VannesteLiselot MusCeline EveraertBram De WildeFranki SpelemanCharlotte ScottKatleen De Preter

Liver macrophages in health and disease

Martin GuilliamsCharlotte Scott

A1 Journal Article in IMMUNITY

Modulating hepatic macrophages with annexin A1 in non-alcoholic steatohepatitis

Federico Francesco De PontiCharlotte Scott

Editorial material

Single-cell RNA and protein profiling of immune cells from the mouse brain and its border tissues

Isabelle ScheyltjensHannah Van HoveKaren De VlaminckDaliya KanchevaJonathan BastosMonica Vara-PerezAna Rita Pombo AntunesLiesbet MartensCharlotte ScottJo Van Ginderachter et al.

A1 Journal Article in NATURE PROTOCOLS

Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

Martin GuilliamsJohnny BonnardelBirthe HaestBart VanderborghtCamille WagnerAnneleen RemmerieAnna BujkoLiesbet MartensTinne ThonéRobin Browaeys et al.

A1 Journal Article in CELL

Understanding hepatic macrophage phenotypes and functions in metabolic-associated fatty liver disease

Anneleen RemmerieCharlotte ScottMartin Guilliams

Who on IRF are you? IRF8 deficiency redirects cDC1 lineage commitment

Kathryn WallerCharlotte Scott

Editorial material

2021

A20 deficiency in myeloid cells protects mice from diet-induced obesity and insulin resistance due to increased fatty acid metabolism

Leen CatrysseBastiaan MaesParul MehrotraArne MartensEsther HosteLiesbet MartensChristian MaueröderAnneleen RemmerieAnna BujkoKarolina Slowicka et al.

A1 Journal Article in CELL REPORTS

Hepatic macrophage responses in inflammation, a function of plasticity, heterogeneity or both?

Christian ZwickerAnna BujkoCharlotte Scott

A1 Journal Article in FRONTIERS IN IMMUNOLOGY

ILC3s control splenic cDC homeostasis via lymphotoxin signaling

Matthias VanderkerkenAntonio Pires da Silva BaptistaMarco De GiovanniSatoshi FukuyamaRobin BrowaeysCharlotte ScottPaula S. NorrisGerard EberlJames P. Di SantoEric Vivier et al.

A1 Journal Article in JOURNAL OF EXPERIMENTAL MEDICINE

In matters of the heart, (cellular) communication is key

Federico Francesco De PontiCharlotte Scott

Editorial material

Notch-induced LXRα expression is essential for the maintenance of Kupffer cell identity

Wouter T'JonckMartin GuilliamsCharlotte Scott

The conventional dendritic cell lineage is born

Martin GuilliamsCharlotte Scott

Editorial material

Welcoming c-MAF to the macrophage transcription factor VAM-ily

Pieter LouweCharlotte Scott

Editorial material

2020

Deep learning of immune cell differentiation

Alexandra MaslovaRicardo N. RamirezKe MaHugo SchmutzChendi WangCurtis FoxBernard NgChristophe BenoistSara MostafaviCharlotte Scott et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hepatic PPARα function and lipid metabolic pathways are dysregulated in polymicrobial sepsis

Lise Van WyngeneTineke VanderhaeghenSteven TimmermansJolien VandewalleKelly Van LooverenJolien SouffriauCharlotte WallaeysMelanie EggermontSam ErnstEvelien Van Hamme et al.

A1 Journal Article in EMBO MOLECULAR MEDICINE

Stephanie Vargas AguilarOscar AguilarRhys AllanEl Ad David AmirVeronique AngeliMaxim N. ArtyomovNatasha AsinovskiJilian AstaritaK. Frank AustenGeetika Bajpai et al.

A1 Journal Article in NATURE IMMUNOLOGY

Inflammatory type 2 cDCs acquire features of cDC1s and macrophages to orchestrate immunity to respiratory virus infection

Cedric BosteelsKatrijn NeytManon VanheerswynghelsMary van HeldenDorine SichienNincy DebeufSofie De PrijckVictor BosteelsNiels VandammeLiesbet Martens et al.

A1 Journal Article in IMMUNITY

Macrophage subsets in obesity, aligning the liver and adipose tissue

Anneleen RemmerieLiesbet MartensCharlotte Scott

A1 Journal Article in FRONTIERS IN ENDOCRINOLOGY

Open Source ImmGen : network perspective on metabolic diversity among mononuclear phagocytes

Anastasiia GainullinaLi-Hao HuangHelena TodorovKiwook KimLim Sheau YngAndrew KentBaosen JiaKumba SedduKaren KrchmaJun Wu et al.

Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver

Anneleen RemmerieLiesbet MartensTinne ThonéAngela CastoldiRuth SeurinckBenjamin PavieJoris RoelsBavo VannesteSofie De PrijckMathias Vanhockerhout et al.

A1 Journal Article in IMMUNITY

OTULIN prevents liver inflammation and hepatocellular carcinoma by inhibiting FADD- and RIPK1 kinase-mediated hepatocyte apoptosis

Lien VerboomArne MartensDario PriemEsther HosteMozes SzeHanna-Kaisa VikkulaLisette Van HoveSofie VoetJana RoelsJonathan Maelfait et al.

A1 Journal Article in CELL REPORTS

Profiling peripheral nerve macrophages reveals two macrophage subsets with distinct localization, transcriptome and response to injury

Elke YdensLukas AmannBob AsselberghCharlotte ScottLiesbet MartensDorine SichienOmar MossadThomas BlankSofie De PrijckDonovan Low et al.

A1 Journal Article in NATURE NEUROSCIENCE

Transcriptional regulation of DC fate specification

Cedric BosteelsCharlotte Scott

A1 Journal Article in MOLECULAR IMMUNOLOGY

2019

A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment

Hannah Van HoveLiesbet MartensIsabelle ScheyltjensKaren De VlaminckAna Rita Pombo AntunesSofie De PrijckNiels VandammeSebastiaan De SchepperGert Van IsterdaelCharlotte Scott et al.

A1 Journal Article in NATURE NEUROSCIENCE

Priority lane to cDC1 open for IRF8⁺ progenitors

Martin GuilliamsCharlotte Scott

Editorial material

Stellate cells, hepatocytes, and endothelial cells imprint the Kupffer cell identity on monocytes colonizing the liver macrophage niche

Johnny BonnardelWouter T'JonckDjoere GaublommeRobin BrowaeysCharlotte ScottLiesbet MartensBavo VannesteSofie De PrijckSergei A NedospasovAnna Kremer et al.

A1 Journal Article in IMMUNITY

ZEBs : novel players in immune cell development and function

Charlotte ScottKyla D Omilusik

A1 Journal Article in TRENDS IN IMMUNOLOGY

2018

'NOTCHing up' the in vitro production of dendritic cells

Martin GuilliamsCharlotte Scott

Editorial material

A20 critically controls microglia activation and inhibits inflammasome-dependent neuroinflammation

Sofie VoetConor Mc GuireNora HagemeyerArne MartensAnna SchroederPeter WieghoferCarmen DaemsOri StaszewskiLieselotte Vande WalleMarta Joana Costa Jordao et al.

A1 Journal Article in NATURE COMMUNICATIONS

Macrophages and lipid metabolism

Anneleen RemmerieCharlotte Scott

A1 Journal Article in CELLULAR IMMUNOLOGY

Myocarditis elicits dendritic cell and monocyte infiltration in the heart and self-antigen presentation by conventional type 2 dendritic cells

Katrien Van Der BorghtCharlotte ScottLiesbet MartensDorine SichienGert Van IsterdaelVeronika NindlYvan SaeysLouis BoonBurkhard LudewigThierry Gillebert et al.

A1 Journal Article in FRONTIERS IN IMMUNOLOGY

Proteasomal degradation of NOD2 by NLRP12 in monocytes promotes bacterial tolerance and colonization by enteropathogens

Sylvain NormandNadine WaldschmittAndreas NeerincxRuben Julio Martinez-TorresCamille ChauvinAurelie Couturier-MaillardOlivier BoulardLaetitia CobretFawaz AwadLudovic Huot et al.

A1 Journal Article in NATURE COMMUNICATIONS

The role of Kupffer cells in hepatic iron and lipid metabolism

Charlotte ScottMartin Guilliams

Editorial material

The transcription factor ZEB2 is required to maintain the tissue-specific identities of macrophages

Charlotte ScottWouter T'JonckLiesbet MartensHelena TodorovDorine SichienBieke SoenJohnny BonnardelSofie De PrijckNiels VandammeRobrecht Cannoodt et al.

A1 Journal Article in IMMUNITY

Tissue unit-ed : lung cells team up to drive alveolar macrophage development

Charlotte ScottMartin Guilliams

Editorial material

Zeb1 and Zeb2 : master regulators of mononuclear phagocyte development and homeostasis

Bieke SoenGeert BerxCharlotte Scott

2017

Barrier-tissue macrophages : functional adaptation to environmental challenges

Allan Mcl MowatCharlotte ScottCalum C Bain

A1 Journal Article in NATURE MEDICINE

Development of conventional dendritic cells : from common bone marrow progenitors to multiple subsets in peripheral tissues

Dorine SichienBart LambrechtMartin GuilliamsCharlotte Scott

A1 Journal Article in MUCOSAL IMMUNOLOGY

Does niche competition determine the origin of tissue-resident macrophages?

Martin GuilliamsCharlotte Scott

A1 Journal Article in NATURE REVIEWS IMMUNOLOGY

Isolation and identification of intestinal myeloid cells

Charlotte ScottCalum C BainAllan McI Mowat

Bookchapter in Inflammation : methods and protocols

Kupffer cell pool is maintained by local proliferation and the differentiation of bone marrow monocytes into short-lived monocyte-derived Kupffer cells during non-alcoholic steatohepatitis and recovery

Lindsey DevisscherCharlotte ScottSander LefereSarah RaevensEliene BogaertsAnnelies ParidaensXavier VerhelstAnja GeertsMartin GuilliamsHans Van Vlierberghe

Myocardial infarction primes autoreactive T cells through activation of dendritic cells

Katrien Van Der BorghtCharlotte ScottVeronika NindlAnn BouchéLiesbet MartensDorine SichienJustine Van MoorleghemManon VanheerswynghelsSofie De PrijckYvan Saeys et al.

A1 Journal Article in CELL REPORTS

Non-alcoholic steatohepatitis induces transient changes within the liver macrophage pool

Lindsey DevisscherCharlotte ScottSander LefereSarah RaevensEliene BogaertsAnnelies ParidaensXavier VerhelstAnja GeertsMartin GuilliamsHans Van Vlierberghe

A1 Journal Article in CELLULAR IMMUNOLOGY

TGFβR signalling controls CD103⁺CD11b⁺ dendritic cell development in the intestine

CC BainJ MontgomeryCharlotte ScottJM KelMJH Girard-MadouxLiesbet MartensTFP Zangerle-MurrayJ Ober-BlobaumD Lindenbergh-KortleveJN Samsom et al.

A1 Journal Article in NATURE COMMUNICATIONS

2016

Bone marrow-derived monocytes give rise to self-renewing and fully differentiated Kupffer cells

Charlotte ScottFang ZhengPatrick De BaetselierLiesbet MartensYvan SaeysSofie De PrijckSaskia LippensChloé AbelsSteve SchoonoogheGeert Raes et al.

A1 Journal Article in NATURE COMMUNICATIONS

Conventional dendritic cells : identification, subsets, development, and functions

Charlotte ScottBart Lambrecht

Bookchapter in Encyclopedia of immunobiology, vol. 3 : activation of the immune system

IRF8 transcription factor controls survival and function of terminally differentiated conventional and plasmacytoid dendritic cells, respectively

Dorine SichienCharlotte ScottLiesbet MartensMatthias VanderkerkenSofie Van GassenMaud PlantingaThorsten JoerisSofie De PrijckLeen VanhoutteManon Vanheerswynghels et al.

A1 Journal Article in IMMUNITY

Isolation and identification of conventional dendritic cell subsets from the intestine of mice and men

Charlotte ScottPamela B WrightSimon WF MillingAllan Mowat

Bookchapter in Dendritic cell protocols

Long-lived self-renewing bone marrow-derived macrophages displace embryo-derived cells to inhabit adult serous cavities

Calum C BainCatherine A HawleyHannah GarnerCharlotte ScottAnika SchriddeNicholas J SteersMatthias MackAnagha JoshiMartin GuilliamsAllan Mc I Mowat et al.

A1 Journal Article in NATURE COMMUNICATIONS

The transcription factor Zeb2 regulates development of conventional and plasmacytoid DCs by repressing Id2

Charlotte ScottBieke SoenLiesbet MartensNicolas SkrypekWouter SaelensJoachim TaminauGillian BlanckeGert Van IsterdaelDanny HuylebroeckJody Haigh et al.

A1 Journal Article in JOURNAL OF EXPERIMENTAL MEDICINE

The tumour microenvironment harbours ontogenically distinct dendritic cell populations with opposing effects on tumour immunity

Damya LaouiJiri KeirsseYannick MoriasEva Van OvermeireXenia GeeraertsYvon ElkrimMate KissEvangelia BolliQods LahmarDorine Sichien et al.

A1 Journal Article in NATURE COMMUNICATIONS

Unsupervised high-dimensional analysis aligns dendritic cells across tissues and species

Martin GuilliamsCharles-Antoine DutertreCharlotte ScottNaomi McGovernDorine SichienSvetoslav ChakarovSofie Van GassenJinmiao ChenMichael PoidingerSofie De Prijck et al.

A1 Journal Article in IMMUNITY

Yolk sac macrophages, fetal liver, and adult monocytes can colonize an empty niche and develop into functional tissue-resident macrophages

Lianne van de LaarWouter SaelensSofie De PrijckLiesbet MartensCharlotte ScottGert Van IsterdaelEik HoffmannRudi BeyaertYvan SaeysBart Lambrecht et al.

A1 Journal Article in IMMUNITY

2015

CCR2⁺CD103⁻ intestinal dendritic cells develop from DC-committed precursors and induce interleukin-17 production by T cells

Charlotte ScottCC BainPB WrightDorine SichienK KotarskyEmma PerssonK LudaMartin GuilliamsBart LambrechtWW Agace et al.

A1 Journal Article in MUCOSAL IMMUNOLOGY

Lymph-borne CD8 alpha(+) dendritic cells are uniquely able to cross-prime CD8(+) T cells with antigen acquired from intestinal epithelial cells

V. CerovicS. A. HoustonJ. WestlundL. UtriainenE. S. DavisonCharlotte ScottC. C. BainT. JoerisW. W. AgaceR. A. Kroczek et al.

A1 Journal Article in MUCOSAL IMMUNOLOGY

2014

Constant replenishment from circulating monocytes maintains the macrophage pool in the intestine of adult mice

Calum C. BainAlberto Bravo-BlasCharlotte ScottElisa Gomez PerdigueroFrederic GeissmannSandrine HenriBernard MalissenLisa C. OsborneDavid ArtisAllan Mci Mowat

A1 Journal Article in NATURE IMMUNOLOGY

Interleukin-22 binding protein (IL-22BP) is constitutively expressed by a subset of conventional dendritic cells and is strongly induced by retinoic acid

J. C. J. MartinG. BeriouM. HeslanC. ChauvinL. UtriainenA. AumeunierCharlotte ScottA. MowatV. CerovicS. A. Houston et al.

A1 Journal Article in MUCOSAL IMMUNOLOGY

Mononuclear phagocytes of the intestine, the skin, and the lung

Charlotte ScottSandrine HenriMartin Guilliams

A1 Journal Article in IMMUNOLOGICAL REVIEWS

Signal regulatory protein alpha (SIRPα) regulates the homeostasis of CD103⁺CD11b⁺ DCs in the intestinal lamina propria

Charlotte ScottZangerle T. F. P. MurrayKatherine S. H. BeckhamGillian DouceAllan McI Mowat

A1 Journal Article in EUROPEAN JOURNAL OF IMMUNOLOGY

The MacBlue binary transgene (csf1r-gal4VP16/UAS-ECFP) provides a novel marker for visualisation of subsets of monocytes, macrophages and dendritic cells and responsiveness to CSF1 administration

Kristin A. SauterClare PridansAnuj SehgalCalum C. BainCharlotte ScottLindsey MoffatRocio RojoBen M. StutchfieldClaire L. DaviesDavid S. Donaldson et al.

A1 Journal Article in PLOS ONE

Type 2 Innate Lymphoid Cells Drive CD4(+) Th2 Cell Responses

Ananda S. MirchandaniAnne-Gaelle BesnardEdwin YipCharlotte ScottCalum C. BainVuk CerovicRobert J. SalmondFoo Y. Liew

A1 Journal Article in JOURNAL OF IMMUNOLOGY

2013

Dendritic cell subsets in the intestinal lamina propria : ontogeny and function

Emma K. PerssonCharlotte ScottAllan McI MowatWilliam W. Agace

A1 Journal Article in EUROPEAN JOURNAL OF IMMUNOLOGY

Intestinal CD103(-) dendritic cells migrate in lymph and prime effector T cells

V. CerovicS. A. HoustonCharlotte ScottA. AumeunierU. YrlidA. M. MowatS. W. F. Milling

A1 Journal Article in MUCOSAL IMMUNOLOGY

Resident and pro-inflammatory macrophages in the colon represent alternative context-dependent fates of the same Ly6C(hi) monocyte precursors

C. C. BainCharlotte ScottH. Uronen-HanssonS. GudjonssonO. JanssonO. GripMartin GuilliamsB. MalissenW. W. AgaceA. Mc I. Mowat

A1 Journal Article in MUCOSAL IMMUNOLOGY

2011

Intestinal CD103(+) dendritic cells : master regulators of tolerance?

Charlotte ScottAude M. AumeunierAllan Mcl. Mowat

A1 Journal Article in TRENDS IN IMMUNOLOGY