Research Explorer

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Researcher

Celine Everaert

47 Results

2023

Longitudinal evaluation of serum microRNAs as biomarkers for neuroblastoma burden and therapeutic p53 reactivation

Alan Van GoethemJill DeleuNurten YigitCeline EveraertFjoralba ZekaFranki SpelemanPieter MestdaghJo VandesompeleTom Van Maerken

A2 Journal Article in NAR CANCER

2022

A 3′‐end capture sequencing method for high‐throughput targeted gene expression profiling

Eric de Bony de LavergneFien GysensNurten YigitJasper AnckaertCeline EveraertEveline Vanden EyndeKimberly VerniersWillem van SnippenbergWim TrypsteenPieter Mestdagh

A1 Journal Article in BIOTECHNOLOGY JOURNAL

Blocking unwanted sequences by target specific high-affinity binding oligonucleotides during transcriptome library preparation

Celine EveraertJasper VerwiltKimberly VerniersNiels VandammeAlvaro Marcos RubioJo VandesompelePieter Mestdagh

CiLiQuant : quantification of RNA junction reads based on their circular or linear transcript origin

Annelien MorlionEva HulstaertMarieke VrommanJasper AnckaertCeline EveraertJo VandesompelePieter Mestdagh

A2 Journal Article in FRONTIERS IN BIOINFORMATICS

Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Noah BonineTinne ThonéBavo VannesteLiselot MusCeline EveraertBram De WildeFranki SpelemanCharlotte ScottKatleen De Preter

Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Noah BonineTinne ThonéBavo VannesteLiselot MusCeline EveraertBram De WildeFranki SpelemanCharlotte ScottKatleen De Preter

The adrenergic-specific long non-coding RNA NESPR controls survival of neuroblastoma cells

Louis DelhayeEric de Bony de LavergneDries RombautBieke DecaestekerLisa DepestelAmber LouwagieEva D'haenePieter-Jan VoldersNurten YigitDelphine De SutterJasper AnckaertSarah-Lee BekaertCeline EveraertBjörn MentenJo VandesompeleSteve LefeverFranki SpelemanSven EyckermanPieter Mestdagh

Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA

Vanessa VermeirssenJill DeleuAnnelien MorlionCeline EveraertJilke De WildeJasper AnckaertKaat DurinckJustine NuytensMuhammad RishfiFranki SpelemanHanne Van DroogenbroeckKimberly VerniersTom Van MaerkenBram De WildeJo VandesompeleAnneleen Decock

A2 Journal Article in NAR CANCER

2021

Custom long non-coding RNA capture enhances detection sensitivity in different human sample types

Annelien MorlionCeline EveraertJustine NuytensEva HulstaertJo VandesompelePieter Mestdagh

A1 Journal Article in RNA BIOLOGY

Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls

Eva HulstaertAnneleen DecockAnnelien MorlionCeline EveraertKimberly VerniersJustine NuytensPieter MestdaghJo Vandesompele

A2 Journal Article in STAR PROTOCOLS

2020

Development of extracellular RNA sequencing technologies and applications for cancer diagnosis and monitoring

Celine EveraertPieter MestdaghJo Vandesompele

Imaging-AMARETTO : an imaging genomics software tool to interrogate multiomics networks for relevance to radiography and histopathology imaging biomarkers of clinical outcomes

Celine Everaert

A2 Journal Article in JCO CLINICAL CANCER INFORMATICS

Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

Celine EveraertHetty HelsmoortelAnneleen DecockEva HulstaertRuben Van PaemelKimberly VerniersJustine NuytensJasper AnckaertJoeri TulkensBert DhondtAn HendrixPieter MestdaghJo Vandesompele

SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups

Celine EveraertPieter-Jan VoldersAnnelien MorlionOlivier ThasPieter Mestdagh

A1 Journal Article in BMC Bioinformatics

Substantial performance differences among RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control study-important considerations for liquid biopsies

Anneleen DecockJasper AnckaertCeline EveraertJustine NuytensAn HendrixJo VandesompelePieter MestdaghBert DhondtRuben Van PaemelKimberly VerniersNurten YigitKathleen SchoofsAnnelien MorlionJill DeleuEva HulstaertFrancisco Avila CobosEveline Vanden EyndeHetty HelsmoortelOlivier De WeverAnnouck Philippron

2019

Combined analysis of metabolomes, proteomes, and transcriptomes of hepatitis C virus-infected cells and liver to identify pathways associated with disease development

Celine Everaert

A1 Journal Article in GASTROENTEROLOGY

Dramatic differences in RNA purification kit performance in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockOlivier De WeverBert DhondtCeline EveraertHetty HelsmoortelAn HendrixEva HulstaertPieter MestdaghJustine NuytensAnnouck PhilippronEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

Dramatic differences in RNA purification kit performance in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockOlivier De WeverBert DhondtCeline EveraertHetty HelsmoortelAn HendrixEva HulstaertPieter MestdaghJustine NuytensAnnouck PhilippronEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

Evaluating the impact of RNA purification kit and blood collection tube in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockJill DeleuOlivier De WeverBert DhondtCeline EveraertHetty HelsmoortelAn HendrixEva HulstaertPieter MestdaghJustine NuytensAnnouck PhilippronKathleen SchoofsEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes

Dries RombautBieke DecaestekerCeline EveraertNurten YigitKatleen De PreterFranki SpelemanJo VandesompeleSteve LefeverPieter Mestdagh

A1 Journal Article in SCIENTIFIC REPORTS

Long noncoding RNA expression profiling in cancer : challenges and opportunities

Lucia LorenziFrancisco Avila CobosAnneleen DecockCeline EveraertHetty HelsmoortelSteve LefeverKaren VerboomPieter-Jan VoldersFranki SpelemanJo VandesompelePieter Mestdagh

A1 Journal Article in GENES CHROMOSOMES & CANCER

Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

Celine EveraertHetty HelsmoortelAnneleen DecockEva HulstaertRuben Van PaemelKimberly VerniersJustine NuytensJasper AnckaertNele NijsJoeri TulkensBert DhondtAn HendrixPieter MestdaghJo Vandesompele

A1 Journal Article in SCIENTIFIC REPORTS

SMARTer single cell total RNA sequencing

Karen VerboomCeline EveraertNurten YigitDries RombautJasper AnckaertFranki SpelemanPieter MestdaghJo Vandesompele

SMARTer single cell total RNA-sequencing

Karen VerboomCeline EveraertNurten YigitDries RombautJasper AnckaertFranki SpelemanPieter MestdaghJo Vandesompele

A1 Journal Article in NUCLEIC ACIDS RESEARCH

TFutils : data structures for transcription factor bioinformatics

Celine Everaert

A2 Journal Article in F1000RESEARCH

The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35

Celine EveraertJo VandesompelePieter Mestdagh

A1 Journal Article in NATURE COMMUNICATIONS

2018

Detecting long non-coding RNA biomarkers in prostate cancer liquid biopsies : hype or hope?

Hetty HelsmoortelCeline EveraertNicolaas LumenPiet OstJo Vandesompele

A2 Journal Article in NON-CODING RNA RESEARCH

Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data

Alemu Takele AssefaCeline EveraertPieter MestdaghOlivier ThasJo Vandesompele

A1 Journal Article in GENOME BIOLOGY

Longitudinal evaluation of murine serum microRNAs as biomarkers for neuroblastoma burden and therapeutic TP53 reactivation

Alan Van GoethemNurten YigitCeline EveraertFjoralba ZekaFranki SpelemanPieter MestdaghJo VandesompeleTom Van Maerken

The extracellular RNA quality control (exRNAQC) study : controlling pre-analytical variables of RNA sequencing in blood-based precision medicine

Francisco Avila CobosAnneleen DecockKatleen De PreterOlivier De WeverBram De WildeBert DhondtCeline EveraertHetty HelsmoortelAn HendrixEva HulstaertPieter MestdaghNele NijsAnnouck PhilippronJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

The neuroblastoma-specific lncRNA NESPR activates PHOX2B expression and is essential for neuroblastoma cell survival

Dries RombautLouis DelhayeEva D'haeneNurten YigitCeline EveraertBjörn MentenJo VandesompeleSven EyckermanSteve LefeverPieter Mestdagh

Zipper plot : visualizing transcriptional activity of genomic regions

Francisco Avila CobosPieter-Jan VoldersCeline EveraertDries RombautJo VandesompeleKatleen De PreterPieter Mestdagh

2017

Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data

Celine EveraertPieter Mestdagh

A1 Journal Article in SCIENTIFIC REPORTS

PAN-cancer identification of ncRNAs with a high therapeutic and diagnostic potential

Celine EveraertJo VandesompelePieter Mestdagh

Pancreatic cancer : hope to improve prognosis through thorough analysis of DNA and RNA biomarkers for detection and therapy monitoring in liquid biopsies

Greet WiemeFrederik BerrevoetAude VanlanderMarc De ManKaren GeboesJo Van DorpeAnne HoorensMalaïka Van der LindenJurgen van LimmenCeline EveraertAnneleen DecockJo VandesompeleBjörn MentenKathleen Claes

The transcriptome of lung tumor-infiltrating dendritic cells reveals a tumor-supporting phenotype and a microRNA signature with negative impact on clinical outcome

Lotte PyfferoenElisabeth BrabantsCeline EveraertNancy De CabooterKelly HeynsKim DeswarteManon VanheerswynghelsSofie De PrijckMelissa DullaersHamida HammadOlivier De WeverPieter MestdaghJo VandesompeleBart LambrechtKarim Vermaelen

A1 Journal Article in ONCOIMMUNOLOGY

Zipper plot : visualizing transcriptional activity of genomic regions

Francisco Avila CobosPieter-Jan VoldersCeline EveraertDries RombautJo VandesompeleKatleen De PreterPieter Mestdagh

A1 Journal Article in BMC BIOINFORMATICS

2016

Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data

Celine EveraertAriane De GanckJan HellemansJo VandesompelePieter Mestdagh

Decoding cancer transcriptomes using public RNA sequencing data

Celine EveraertJo VandesompelePieter Mestdagh

Decoding cancer transcriptomes using public RNA sequencing data

Celine EveraertJo VandesompelePieter Mestdagh

Decoding cancer transcriptomes using public RNA sequencing data

Celine EveraertJo VandesompelePieter Mestdagh

Depletion of tRNA-halves enables effective small RNA sequencing of low-input murine serum samples

Alan Van GoethemNurten YigitCeline EveraertLiselot MusFranki SpelemanPieter MestdaghTom Van MaerkenJo Vandesompele

A1 Journal Article in SCIENTIFIC REPORTS

Dissecting the NOTCH1 driven transcriptional landscape in T-cell acute lymphoblastic leukemia at single cell level

Karen VerboomKaat DurinckCeline EveraertRobrecht CannoodtPieter Van VlierbergheJo VandesompeleFranki Speleman

Identification of non-invasive biomarkers for treatment response in neuroblastoma by circulating miRNA profiling

Alan Van GoethemNurten YigitCeline EveraertPieter MestdaghFranki SpelemanTom Van MaerkenJo Vandesompele

PAN-cancer identification of ncRNAs with a high therapeutic and diagnostic potential

Celine EveraertJo VandesompelePieter Mestdagh

PAN-cancer identification of ncRNAs with a high therapeutic and diagnostic potential

Celine EveraertJo VandesompelePieter Mestdagh

PAN-cancer therapeutic target identification by omics data integration

Celine EveraertJo VandesompelePieter Mestdagh