Research Explorer

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Researcher

Bart Mesuere

28 Results

2021

Engaging schools to explore meteorological observational gaps

Steven CaluwaertsSara TopThomas VergauwenGuy WautersKoen De RidderRafiq HamdiBart MesuereBert Van SchaeybroeckHendrik WoutersPiet Termonia

A1 Journal Article in BULLETIN OF THE AMERICAN METEOROLOGICAL SOCIETY

Het VLINDER-project

Steven CaluwaertsThomas VergauwenSara TopHerwig DejongheBart MesuerePiet TermoniaGuy Wauters

Bookchapter in Jaarboek De Aardrijkskunde 2020

MegaGO : a fast yet powerful approach to assess functional gene ontology similarity across meta-omics data sets

Pieter VerschaffeltTim Van Den BosscheWassim GabrielMichał BurdukiewiczAlessio SoggiuLennart MartensBernhard Y. RenardHenning SchiebenhoeferBart Mesuere

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Unipept Desktop : a faster, more powerful metaproteomics results analysis tool

Pieter VerschaffeltTim Van Den BosscheLennart MartensPeter DawyndtBart Mesuere

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Unipept Visualizations: an interactive visualization library for biological data

Pieter VerschaffeltJames CollierAlexander BotzkiLennart MartensPeter DawyndtBart Mesuere

U Journal Article in Bioinformatics

2020

Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

Tim Van Den BosschePieter VerschaffeltKay SchallertHarald BarsnesPeter DawyndtDirk BenndorfBernhard Y. RenardBart MesuereLennart MartensThilo Muth

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Proceedings of the EuBIC-MS 2020 Developers’ Meeting

Christopher AshwoodWout BittremieuxEric W. DeutschNadezhda T. DonchevaViktoria DorferRalf GabrielsVladimir GorshkovSurya GuptaAndrew R. JonesLukas KällDominik KopczynskiLydie LaneLudwig LautenbacherMarc LegeayMarie Locard-PauletBart MesuereYasset Perez-RiverolEugen NetzJulianus PfeufferTimo SachsenbergRenee SalzPatroklos SamarasHenning SchiebenhoeferTobias SchmidtVeit SchwämmleAlessio SoggiuJulian UszkoreitTim Van Den BosscheBart Van PuyveldeJoeri Van StrienPieter VerschaffeltHenry WebelSander Willems

A2 Journal Article in EUPA OPEN PROTEOMICS

Survey of metaproteomics software tools for functional microbiome analysis

Ray SajulgaCaleb EasterlyMichael RiffleBart MesuereThilo MuthSubina MehtaPraveen KumarJames JohnsonBjoern Andreas GrueningHenning SchiebenhoeferCarolin A. KolmederStephan FuchsBrook L. NunnJoel RudneyTimothy J. GriffinPratik D. Jagtap

A1 Journal Article in PLOS ONE

Unipept CLI 2.0 : adding support for visualizations and functional annotations

Pieter VerschaffeltPhilippe Van ThienenTim Van Den BosscheFelix Van der JeugtCaroline De TenderLennart MartensPeter DawyndtBart Mesuere

A1 Journal Article in BIOINFORMATICS

2019

A method for comprehensive proteomic analysis of human faecal samples to investigate gut dysbiosis in patients with cystic fibrosis

Griet DebyserMaarten AertsPieter Van HeckeBart MesuereGwen DuytschaeverPeter DawyndtKris De BoeckPeter VandammeBart Devreese

A1 Journal Article in ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY

Het is tijd voor één aanmeldsysteem voor alle Vlaamse scholen

Wouter RogiestBart Mesuere

Article in a magazine

Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome

Caroline De TenderBart MesuereFelix Van der JeugtA HaegemanT RuttinkB VandecasteelePeter DawyndtJ DebodeEE Kuramae

A1 Journal Article in SCIENTIFIC REPORTS

Unipept 4.0 : functional analysis of metaproteome data

Robbert Gurdeep SinghAlessandro TancaAntonio PalombaFelix Van der JeugtPieter VerschaffeltSergio UzzauLennart MartensPeter DawyndtBart Mesuere

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

metaQuantome : an integrated, quantitative metaproteomics approach reveals connections between taxonomy and protein function in complex microbiomes

Caleb W EasterlyRay SajulgaSubina MehtaJames JohnsonPraveen KumarShane HublerBart MesuereJoel RudneyTimothy J GriffinPratik D Jagtap

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

2018

Disseminating metaproteomic informatics capabilities and knowledge using the Galaxy-P framework

Clemens BlankCaleb EasterlyBjoern GrueningJames JohnsonCarolin A KolmederPraveen KumarDamon MaySubina MehtaBart MesuereZachary BrownJoshua E EliasW Judson HerveyThomas McGowanThilo MuthBrook L NunnJoel RudneyAlessandro TancaTimothy J GriffinPratik D Jagtap

A2 Journal Article in PROTEOMES

High-throughput metaproteomics data analysis with Unipept : a tutorial

Bart MesuereFelix Van der JeugtToon WillemsTom NaessensBart DevreeseLennart MartensPeter Dawyndt

A1 Journal Article in JOURNAL OF PROTEOMICS

Hoe het algoritme achter het aanmeldsysteem voor het onderwijs verbeterd kan worden

2016

Faecal proteomics : a tool to investigate dysbiosis and inflammation in patients with cystic fibrosis

Griet DebyserBart MesuereLieven ClementJens Van de WeygaertPieter Van HeckeGwen DuytschaeverMaarten AertsPeter DawyndtKris De BoeckPeter VandammeBart Devreese

A1 Journal Article in JOURNAL OF CYSTIC FIBROSIS

The unique peptidome : taxon-specific tryptic peptides as biomarkers for targeted metaproteomics

Bart MesuereFelix Van der JeugtBart DevreesePeter VandammePeter Dawyndt

A1 Journal Article in PROTEOMICS

Unipept web services for metaproteomics analysis

Bart MesuereToon WillemsFelix Van der JeugtBart DevreesePeter VandammePeter Dawyndt

A1 Journal Article in BIOINFORMATICS

Unipept: computational exploration of metaproteome data

Bart MesuerePeter Dawyndt

2015

A cross-sectional and longitudinal metaproteomics approach reveals intestinal dysbiosis, and the presence of markers of chronic inflammation and mucus-related proteins in faecal samples of patients with cystic fibrosis

Griet DebyserBart MesuereJens Van de WeygaertLieven ClementMaarten AertsGwen DuytschaeverPeter DawyndtK De BoeckPeter VandammeBart Devreese

The Unipept metaproteomics analysis pipeline

Bart MesuereGriet DebyserMaarten AertsBart DevreesePeter VandammePeter Dawyndt

A1 Journal Article in PROTEOMICS

2012

A shotgun metaproteomics approach to study the microbiome of cystic fibrosis (CF) patients

Griet DebyserBart MesuerePeter DawyndtPeter VandammeBart Devreese

A shotgun metaproteomics approach to study the microbiome of cystic fibrosis (CF) patients

Griet DebyserBart MesuerePeter DawyndtPeter VandammeBart Devreese

Application of MALDI-TOF mass spectrometry for the detection of enterotoxins produced by pathogenic strains of the Bacillus cereus group

Varvara TsiliaBart DevreeseIlse de BaenstBart MesuereAndreja RajkovicMieke UyttendaeleTom Van de WieleMarc Heyndrickx

A1 Journal Article in ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Unipept: tryptic peptide-based biodiversity analysis of metaproteome samples

Bart MesuereBart DevreeseGriet DebyserMaarten AertsPeter VandammePeter Dawyndt

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2010

Screening for taxon-specific peptides using dynamic index structures

Bart MesuereGriet DebyserPeter VandammeBart DevreesePeter Dawyndt