Research Explorer

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Project

A novel, data driven-paradigm for the sensitive identification of phosphopeptides

Outputs and Outcomes

Publications

Proteomics standards initiative at twenty years : current activities and future work

Eric W. DeutschJuan Antonio VizcaínoAndrew R. JonesPierre-Alain BinzHenry LamJoshua KleinWout BittremieuxYasset Perez-RiverolDavid L. TabbMathias WalzerSylvie Ricard-BlumHenning HermjakobSteffen NeumannTytus D. MakShin KawanoLuis MendozaTim Van Den BosscheRalf GabrielsNuno BandeiraJeremy CarverBenjamin PullmanZhi SunNils HoffmannJim ShofstahlYunping ZhuLuana LicataFederica QuagliaSilvio C. E. TosattoSandra E. Orchard et al.

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Cov²MS : an automated and quantitative matrix-independent assay for mass spectrometric measurement of SARS-CoV-2 nucleocapsid protein

Bart Van PuyveldeKatleen Van UytfangheLaurence Van OudenhoveRalf GabrielsTessa Van RoyenArne MatthysMorteza RazaviRichard YipTerry PearsonNicolas DrouinJan ClaereboudtDominic FoleyRobert WardleKevin WyndhamThomas HankemeierDonald JonesXavier SaelensGeert MartensChristophe StoveDieter DeforceLennart MartensJohannes P.C. VissersN. Leigh AndersonMaarten Dhaenens et al.

A1 Journal Article in ANALYTICAL CHEMISTRY

Immunopeptidomics-based design of mRNA vaccine formulations against Listeria monocytogenes

Rupert MayerRein VerbekeCaroline AsselmanIlke AernoutAdillah GulDenzel EggermontKatie BoucherFabien Henri TheryTeresa MaiaHans DemolRalf GabrielsLennart MartensChristophe BécavinStefaan De SmedtBart VandekerckhoveIne LentackerFrancis Impens et al.

A1 Journal Article in NATURE COMMUNICATIONS

Sensitive and specific spectral library searching with CompOmics Spectral library Searching tool and Percolator

Genet Abay ShiferawRalf GabrielsRobbin BouwmeesterTim Van Den BosscheElien VandermarliereLennart MartensPieter-Jan Volders

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics

Bart Van PuyveldeSimon DaledSander WillemsRalf GabrielsAnne Gonzalez de PeredoKarima ChaouiEmmanuelle Mouton-BarbosaDavid BouyssiéKurt BoonenChristopher J. HughesLee A. GethingsYasset Perez-RiverolNic BloomfieldStephen TateOdile SchiltzLennart MartensDieter DeforceMaarten Dhaenens et al.

A1 Journal Article in SCIENTIFIC DATA

MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Arthur DeclercqRobbin BouwmeesterAurélie HirschlerChristine CarapitoSven DegroeveLennart MartensRalf Gabriels

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

DeepLC can predict retention times for peptides that carry as-yet unseen modifications

Robbin BouwmeesterRalf GabrielsNiels HulstaertLennart MartensSven Degroeve

A1 Journal Article in NATURE METHODS

Spectral prediction features as a solution for the search space size problem in proteogenomics

Steven VerbruggenSiegfried GessulatRalf GabrielsAnna MatsarokiHendrik Van de VoordeBernhard KusterSven DegroeveLennart MartensWim Van CriekingeMathias WilhelmGerben Menschaert et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS