Research Explorer

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Project

Systemic redoxome profiling in plants: catching the ROS wave

Outputs and Outcomes

Publications

Scywalker : scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Peter De RijkTijs WatzeelsFahri KüçükaliJasper Van DongenJúlia FauraPatrick WillemsLara De DeynLena DuchateauCarolin GronesThomas EekhoutTim De PooterGeert JorisStephane RombautsBert De RybelRosa RademakersFrank Van BreusegemMojca StrazisarKristel SleegersWouter De Coster et al.

A1 Journal Article in BIOINFORMATICS

Immunopeptidomics mapping of Listeria monocytogenes T cell epitopes in mice

Adillah GulLecia L. PewePatrick WillemsRupert MayerFabien Henri TheryCaroline AsselmanIlke AernoutRein VerbekeDenzel EggermontLaura Van MoortelEllen UptonYifeng ZhangKatie BoucherLaia Miret CasalsHans DemolStefaan De SmedtIne LentackerLilliana RadoshevichJohn T. HartyFrancis Impens et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

The Plant PTM Viewer 2.0 : in-depth exploration of plant protein modification landscapes

Patrick WillemsLieven SterckAvilien DardJingjing HuangIve De SmetKris GevaertFrank Van Breusegem

A1 Journal Article in JOURNAL OF EXPERIMENTAL BOTANY

CysQuant : simultaneous quantification of cysteine oxidation and protein abundance using data dependent or independent acquisition mass spectrometry

Jingjing HuangAn StaesFrancis ImpensVadim DemichevFrank Van BreusegemKris GevaertPatrick Willems

A1 Journal Article in REDOX BIOLOGY

Interactome of Arabidopsis ATG5 suggests functions beyond autophagy

Pernilla H. ElanderSanjana HollaIgor SabljićEmilio Gutierrez-BeltranPatrick WillemsPeter V. BozhkovElena A. Minina

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Mutation of Arabidopsis SME1 and Sm core assembly improves oxidative stress resilience

Patrick WillemsValerie Van RuyskensveldeTakanori MarutaRobin PottieÁlvaro Daniel Fernández FernándezJarne PauwelsMatthew A. HannahKris GevaertFrank Van BreusegemKatrien Van Der Kelen

A1 Journal Article in FREE RADICAL BIOLOGY AND MEDICINE

Functionally annotating cysteine disulfides and metal binding sites in the plant kingdom using AlphaFold2 predicted structures

Patrick WillemsJingjing HuangJoris MessensFrank Van Breusegem

U Journal Article in Free Radical Biology and Medicine

Cysteine thiol–based post-translational modification : what do we know about transcription factors?

Heng ZhouJingjing HuangPatrick WillemsFrank Van BreusegemYanjie Xie

A1 Journal Article in TRENDS IN PLANT SCIENCE

Editorial : plant protein termini : their generation, modification and function

Patrick WillemsPitter F. HuesgenIris FinkemeierEmmanuelle GracietThierry MeinnelFrank Van Breusegem

Editorial material

To new beginnings : riboproteogenomics discovery of N-terminal proteoforms in Arabidopsis thaliana

Patrick WillemsElvis NdahVeronique JonckheereFrank Van BreusegemPetra Van Damme

A1 Journal Article in FRONTIERS IN PLANT SCIENCE