Project

Structure-based design of lysosome targeting chimeric proteins

Code
BOF/STA/202102/013
Duration
01 October 2021 → 30 September 2025
Funding
Regional and community funding: Special Research Fund
Research disciplines
  • Natural sciences
    • (Bio)molecular modelling and design
    • Cheminformatics
    • Structural bioinformatics and computational proteomics
    • Membrane structure and transport
  • Medical and health sciences
    • Molecular biophysics
Keywords
molecular dynamics drug design membrane proteins
 
Project description

Classical drug design approaches rely on finding an accessible binding site whose occupancy can exert a pharmacological effect. This condition eliminates many membrane proteins from being “druggable”. In a new venue, “Lysosomal Targeting Chimeras” (LYTACs) use lysosome-shuttling receptors to establish targeted degradation of membrane proteins. In LYTACs, a chimeric ligand comprises a ligand targeting a membrane protein fused to a ligand of a lysosome-shuttling receptor. This chimera binds simultaneously to the lysosome receptor and the target membrane protein. The lysosome receptor shuttles the cargo to the lysosomal compartments and the target protein will be degraded, which will lead to the pharmacological effect. In this project, the major goal is to study ligand binding to lysosomal receptors and then to use the mechanistic insight to develop new chimeric ligands targeting undruggable membrane proteins.