Research Explorer

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Project

Tackling the big metaproteomics identification challenge in hypercomplex application domains

Outputs & Impact

Publications & research data ( 13 )

Illuminating the invisible : green fluorescent protein as a beacon for antibiotic-induced phage activity in Escherichia coli

Maria João SilvaTim Van Den BosscheMattias CollinRolf Lood

A1 Journal Article in ANTIBIOTICS-BASEL

Metaproteomics in the One Health framework for unraveling microbial effectors in microbiomes

Robert HeyerMaximilian WolfDirk BenndorfSergio UzzauJana SeifertLucia GrengaMartin PabstHeike SchmittBart MesuereTim Van Den Bossche et al.

Editorial material

The microbiologist's guide to metaproteomics

Tim Van Den BosscheJean ArmengaudDirk BenndorfJose Alfredo Blakeley‐RuizMadita BrauerKai ChengMarybeth CreskeyDaniel FigeysLucia GrengaTimothy J. Griffin et al.

A1 Journal Article in IMETA

TIMS2Rescore : a data dependent acquisition-parallel accumulation and serial fragmentation-optimized data-driven rescoring pipeline based on MS2Rescore

Arthur DeclercqRobbe DevreeseJonas ScheidCaroline JachmannTim Van Den BosscheAnnica PreikschatDavid Gomez-ZepedaJeewan Babu RijalAurelie HirschlerJonathan R. Krieger et al.

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Emergence and global spread of Mpox Clade Ib : challenges and the role of wastewater and environmental surveillance

Ananda TiwariThierry KalonjiTaru MillerTim Van Den BosscheAdriana KrolickaHypolite Muhindo-MavokoPatrick MitashiMarc Christian TahitaRolf LoodTarja Pitkänen et al.

Editorial material

PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

Tibo Vande MoortelePieter VerschaffeltQingyao HuangNadezhda T. DonchevaTanja HolsteinCaroline JachmannPeter DawyndtLennart MartensBart MesuereTim Van Den Bossche

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Unipept in 2024 : expanding metaproteomics analysis with support for missed cleavages and semitryptic and nontryptic peptides

Tibo Vande MoorteleBram DevlaminckSimon Van de VyverTim Van Den BosscheLennart MartensPeter DawyndtBart MesuerePieter Verschaffelt

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Proceedings of the EuBIC-MS developers meeting 2023

Pedro BeltraoTim Van Den BosscheRalf GabrielsTanja HolsteinTobias KockmannAlireza NameniChristian PanseRalph SchlapbachLudwig LautenbacherMatthias Mattanovich et al.

A1 Journal Article in JOURNAL OF PROTEOMICS

Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Tim Van Den BosschePieter VerschaffeltTibo Vande MoortelePeter DawyndtLennart MartensBart Mesuere

Bookchapter in Protein bioinformatics

Communicating mass spectrometry quality information in mzQC with Python, R, and Java

Chris BielowNils HoffmannDavid Jimenez-MoralesTim Van Den BosscheJuan Antonio VizcainoDavid L. TabbWout BittremieuxMathias Walzer

A1 Journal Article in JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Enzymatic machinery of wood-inhabiting fungi that degrade temperate tree species

Lydia KippingNico JehmlichJulia MollMatthias NollMartin M GossnerTim Van Den BosschePascal EdelmannWerner BorkenMartin HofrichterHarald Kellner

A1 Journal Article in ISME JOURNAL

The nutritional composition and cell size of microbial biomass for food applications are defined by the growth conditions

Myrsini SakarikaFrederiek-Maarten KerckhofLotte Van PeteghemAlexandra Pinto Martins PereiraTim Van Den BosscheRobbin BouwmeesterRalf GabrielsDelphi Van HaverBarbara UlčarLennart Martens et al.

A1 Journal Article in MICROBIAL CELL FACTORIES

lesSDRF is more : maximizing the value of proteomics data through streamlined metadata annotation

Tine ClaeysTim Van Den BosscheYasset Perez-RiverolKris GevaertJuan Antonio VizcaínoLennart Martens

A1 Journal Article in NATURE COMMUNICATIONS

Activities ( 0 )

Results

Impact narratives ( 0 )

Patents ( 0 )