Research Explorer

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Project

Tackling the big metaproteomics identification challenge in hypercomplex application domains

Outputs and Outcomes

Publications

PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

Tibo Vande MoortelePieter VerschaffeltQingyao HuangNadezhda T. DonchevaTanja HolsteinCaroline JachmannPeter DawyndtLennart MartensBart MesuereTim Van Den Bossche

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Unipept in 2024 : expanding metaproteomics analysis with support for missed cleavages and semitryptic and nontryptic peptides

Tibo Vande MoorteleBram DevlaminckSimon Van de VyverTim Van Den BosscheLennart MartensPeter DawyndtBart MesuerePieter Verschaffelt

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Proceedings of the EuBIC-MS developers meeting 2023

Pedro BeltraoTim Van Den BosscheRalf GabrielsTanja HolsteinTobias KockmannAlireza NameniChristian PanseRalph SchlapbachLudwig LautenbacherMatthias MattanovichAlexey NesvizhskiiBart Van PuyveldeJonas ScheidVeit SchwammleMaximilian StraussAnna Klimovskaia SusmeljMatthew TheHenry WebelMathias WilhelmDirk WinkelhardtWitold E. WolskiMuyao Xi et al.

A1 Journal Article in JOURNAL OF PROTEOMICS

Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Tim Van Den BosschePieter VerschaffeltTibo Vande MoortelePeter DawyndtLennart MartensBart Mesuere

Bookchapter in Protein bioinformatics

Communicating mass spectrometry quality information in mzQC with Python, R, and Java

Chris BielowNils HoffmannDavid Jimenez-MoralesTim Van Den BosscheJuan Antonio VizcainoDavid L. TabbWout BittremieuxMathias Walzer

A1 Journal Article in JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Enzymatic machinery of wood-inhabiting fungi that degrade temperate tree species

Lydia KippingNico JehmlichJulia MollMatthias NollMartin M GossnerTim Van Den BosschePascal EdelmannWerner BorkenMartin HofrichterHarald Kellner

A1 Journal Article in ISME JOURNAL

The nutritional composition and cell size of microbial biomass for food applications are defined by the growth conditions

Myrsini SakarikaFrederiek-Maarten KerckhofLotte Van PeteghemAlexandra Pinto Martins PereiraTim Van Den BosscheRobbin BouwmeesterRalf GabrielsDelphi Van HaverBarbara UlčarLennart MartensFrancis ImpensNico BoonRamon GaniguéKorneel Rabaey et al.

A1 Journal Article in MICROBIAL CELL FACTORIES

lesSDRF is more : maximizing the value of proteomics data through streamlined metadata annotation

Tine ClaeysTim Van Den BosscheYasset Perez-RiverolKris GevaertJuan Antonio VizcaínoLennart Martens

A1 Journal Article in NATURE COMMUNICATIONS