Research Explorer

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Project

A digital phagogram for personalized phage therapy

Outputs and Outcomes

Publications

Hyperdimensional computing : a fast, robust, and interpretable paradigm for biological data

Michiel StockWim Van CriekingeDimitri BoeckaertsSteff TaelmanMaxime Van HaeverbekePieter DewulfBernard De Baets

A1 Journal Article in PLOS COMPUTATIONAL BIOLOGY

DepoScope : accurate phage depolymerase annotation and domain delineation using large language models

Robby Concha-ElokoMichiel StockBernard De BaetsYves BriersRafael SanjuánPilar Domingo-CalapDimitri Boeckaerts

A1 Journal Article in PLOS COMPUTATIONAL BIOLOGY

Prediction of Klebsiella phage-host specificity at the strain level

Dimitri BoeckaertsMichiel StockCelia Ferriol-GonzálezJesús Oteo-IglesiasRafael SanjuánPilar Domingo-CalapBernard De BaetsYves Briers

A1 Journal Article in NATURE COMMUNICATIONS

CkP1 bacteriophage, a S16-like myovirus that recognizes Citrobacter koseri lipopolysaccharide through its long tail fibers

Hugo OliveiraSilvio SantosDiana P. PiresDimitri BoeckaertsGraca PintoRita DominguesJennifer OteroYves BriersRob LavigneMathias SchmelcherAndreas DoetschJoana Azeredo et al.

A1 Journal Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Two novel approaches to identify phage receptor-binding protein sequences

Dimitri BoeckaertsMichiel StockBernard De BaetsYves Briers

Machine learning to assist in large-scale, activity-based synthetic cannabinoid receptor agonist screening of serum samples

Liesl JanssensDimitri BoeckaertsSimon HudsonDaria MorozovaAnnelies CannaertDavid M. WoodCaitlin WolfeBernard De BaetsMichiel StockPaul, I DarganChristophe Stove et al.

A1 Journal Article in CLINICAL CHEMISTRY

Identification of phage receptor-binding protein sequences with hidden Markov models and an extreme gradient boosting classifier

Dimitri BoeckaertsMichiel StockBernard De BaetsYves Briers

A1 Journal Article in VIRUSES-BASEL

The specific capsule depolymerase of phage PMK34 sensitizes Acinetobacter baumannii to serum killing

Karim Abdelkader Soufi AbdelkaderDiana Gutierrez FernandezAgnieszka ŁątkaDimitri BoeckaertsZuzanna Drulis-KawaBjorn CrielHans GerstmansAmal SafaanAhmed S. KhairallaYasser GaberTarek DishishaYves Briers et al.

A1 Journal Article in ANTIBIOTICS-BASEL

Digital phagograms : predicting phage infectivity through a multilayer machine learning approach

Cédric LoodDimitri BoeckaertsMichiel StockBernard De BaetsRob LavigneVera van NoortYves Briers

A1 Journal Article in CURRENT OPINION IN VIROLOGY