Project

Multi-omics approach to identify pancreatic cancer biomarkers in liquid biopsies of advanced stage patients by pioneering single cell mass spectrometry of CTCs and (epi)genetics characterization of cfDNA

Code
BOF/24J/2023/165
Duration
01 October 2023 → 30 September 2027
Funding
Regional and community funding: Special Research Fund
Research disciplines
  • Medical and health sciences
    • Clinical genetics and molecular diagnostics
    • Cancer therapy
    • Molecular diagnostics
    • Protein diagnostics
Keywords
pancreatic cancer liquid biopsies cfDNA: genetic and epigenetic alterations single cell mass spectrometry
 
Project description

Pancreatic cancer is a deadly disease with surgery the only chance for cure. Surgeons have to evaluate whether patients with  advanced pancreatic cancer will benefit from surgery. Current diagnostic tools (imaging and CA19-9), are inadequate, with early recurrence and metastases seen in up to 40% of patients. To address this, a multi-omics approach is proposed to identify PDAC biomarkers in liquid biopsies with higher accuracy, sensitivity, and specificity. This approach involves proteomics of circulating tumor cells (CTCs) and (epi)genomics in cfDNA. We will establish a novel workflow for enrichment of CTCs from blood followed by single cell mass spectrometry. Longitudinal analysis of (epi)genetic changes in cfDNA will provide insights into what percentage of patients have detectable (epi)genetic aberrations at different stages of their disease and if this impacts prognosis. Combining information at the genome and proteome level can in the long term improve diagnostic specificity.