Project

DeoxyBioCat: Unlocking Synthetic Biology of Deoxy Sugars via Redesigned Biocatalytic Cascades

Code
3G0A7520
Duration
01 January 2020 → 31 December 2023
Funding
Research Foundation - Flanders (FWO)
Promotor
Research disciplines
  • Natural sciences
    • Natural products chemistry
    • Carbohydrates
    • Systems biology not elsewhere classified
  • Engineering and technology
    • Biocatalysis
    • (Bio)chemical reactors
Keywords
Enzyme engineering Structure-function relationships deoxysugars
 
Project description

Deoxysugars are special carbohydrates lacking at least one hydroxy group. They are important building blocks and recognition sites in functional oligosaccharides, glycoconjugates and natural glycosides (e.g. antibiotics), in which they often critically affect bioactivity. Deoxygenation of common sugars typically happens at nucleotide sugar level and is catalyzed by 4,6-dehydratases that belong to the short-chain dehydrogenases/reductases (SDRs). Natural deoxysugar synthesis is restricted to only a few highly specialized pathways, which are biologically separated due to high specificities of the involved SDRs, hampering synthetic biology options to create artificial pathways towards new deoxy sugar nucleotides. Important opportunities for deoxysugar synthesis could arise via specificity engineering of SDRs, which remains a fundamental challenge due to subtle structure-function relationships. This project aims to develop new SDRs (dehydratase, epimerase, reductase) that show programmable reactivity and specificity, allowing more flexibility in synthetic cascades. Deeper fundamental understanding of SDRs guides our engineering approach, aiming to 1) broaden substrate
acceptance/selectivity and 2) elicit another reactivity in an enzyme with desired substrate scope via a combination of focused mutagenesis and detailed biochemical/mechanistic analysis. As a practical target, a novel synthetic pathway from sucrose to UDP-Lfucose will be designed, based on engineered SDR enzymes.