Research Explorer

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Project

PROPHECY: Translational control in infection biology: riboproteogenomics of bacterial pathogens

Outputs and Outcomes

Publications

Proximal partners of the organellar N-terminal acetyltransferase NAA60 : insights into Golgi structure and transmembrane protein topology

Sebastian TancoVeronique JonckheereArun Kumar Tharkeshwar RaghunathAnnelies BogaertKris GevaertWim AnneartPetra Van Damme

A1 Journal Article in OPEN BIOLOGY

Endogenous HiBiT-tagging combined with affinity complementation : a new strategy for small open reading frame-encoded polypeptide detection in bacteria

Laure SimoensVeronique JonckheereDominiek CatteeuwPetra Van Damme

A2 Journal Article in ADVANCES IN SAMPLE PREPARATION

Exploring the tomato root protein network exploited by core type 3 effectors from the Ralstonia solanacearum species complex

Joren De RyckVeronique JonckheereBrigitte De PaepeAnnick De KeyserNemo PeetersJohan Van VaerenberghJane DebodePetra Van DammeSofie Goormachtig

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Proteins à la carte : riboproteogenomic exploration of bacterial N-terminal proteoform expression

Igor FijalkowskiValdes SnauwaertPetra Van Damme

A1 Journal Article in MBIO

Distinct dynamics and proximity networks of hub proteins at the prey-invading cell pole in a predatory bacterium

Ophélie RemyYoann G. SantinVeronique JonckheereCoralie TesseurJovana KaljevićPetra Van DammeGéraldine Laloux

A1 Journal Article in JOURNAL OF BACTERIOLOGY

Exposing the small protein load of bacterial life

Laure SimoensIgor FijalkowskiPetra Van Damme

A1 Journal Article in FEMS MICROBIOLOGY REVIEWS

Shift in vacuolar to cytosolic regime of infecting Salmonella from a dual proteome perspective

Ursula FelsPatrick WillemsMargaux De MeyerKris GevaertPetra Van Damme

A1 Journal Article in PLOS PATHOGENS

Gasdermin D independent canonical inflammasome responses cooperate with caspase-8 to establish host defense against gastrointestinal Citrobacter rodentium infection

Elien EeckhoutLisa HamerlinckVeronique JonckheerePetra Van DammeGeert van LooAndy Wullaert

A1 Journal Article in CELL DEATH & DISEASE

Seeking the interspecies crosswalk for filamentous microbe effectors

Naomi StuerPetra Van DammeSofie GoormachtigJudith Van Dingenen

A1 Journal Article in TRENDS IN PLANT SCIENCE

From prediction to function : current practices and challenges towards the functional characterization of type III effectors

Joren De RyckPetra Van DammeSofie Goormachtig

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Expanded in vivo substrate profile of the yeast N-terminal acetyltransferase NatC

Petra Van DammeCamilla OsbergVeronique JonckheereNina GlomnesKris GevaertThomas ArnesenHenriette Aksnes

A1 Journal Article in JOURNAL OF BIOLOGICAL CHEMISTRY

Rhizogenic agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development

Lore GryffroyEvi CeulemansNicolás Manosalva PérezJhon Jairo Venegas MolinaAna JaramilloSavio D. RodriguesLiesbeth De MildeVeronique JonckheereMarc Van MontaguBarbara De ConinckKlaas VandepoelePetra Van DammeAlain Goossens et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selective ribosome profiling reveals a role for SecB in the co-translational inner membrane protein biogenesis

Lena EismannIgor FijalkowskiCarla Verónica GalmozziJiří KoubekFrank TippmannPetra Van DammeGünter Kramer

A1 Journal Article in CELL REPORTS

Hidden in plain sight : challenges in proteomics detection of small ORF-encoded polypeptides

Igor FijalkowskiPatrick WillemsVeronique JonckheereLaure SimoensPetra Van Damme

A2 Journal Article in MICROLIFE

Recent advancements in tracking bacterial effector protein translocation

Julie BraetDominiek CatteeuwPetra Van Damme

A1 Journal Article in MICROORGANISMS

To new beginnings : riboproteogenomics discovery of N-terminal proteoforms in Arabidopsis thaliana

Patrick WillemsElvis NdahVeronique JonckheereFrank Van BreusegemPetra Van Damme

A1 Journal Article in FRONTIERS IN PLANT SCIENCE

Use of hybrid data-dependent and -independent acquisition spectral libraries empowers dual-proteome profiling

Patrick WillemsUrsula FelsAn StaesKris GevaertPetra Van Damme

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Lost and found : re-searching and re-scoring proteomics data aids genome annotation and improves proteome coverage

Patrick WillemsIgor FijalkowskiPetra Van Damme

A1 Journal Article in MSYSTEMS

Keeping in touch with type-III secretion system effectors : mass spectrometry-based proteomics to study effector-host protein-protein interactions

Margaux De MeyerJoren De RyckSofie GoormachtigPetra Van Damme

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Bacterial genetic engineering by means of recombineering for reverse genetics

Ursula FelsKris GevaertPetra Van Damme

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Bacterial riboproteogenomics : the era of N-terminal proteoform existence revealed

Daria FijalkowskaIgor FijalkowskiPatrick WillemsPetra Van Damme

A1 Journal Article in FEMS MICROBIOLOGY REVIEWS