Research Explorer

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Project

From model species to crop: enhancing the translation of functional traits in plants using an integrative network-based approach.

Outputs and Outcomes

Publications

MINI‐AC : inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles

Nicolás Manosalva PérezCamilla FerrariJulia EngelhornThomas DepuydtHilde NelissenThomas HartwigKlaas Vandepoele

A1 Journal Article in PLANT JOURNAL

Characterization of gene regulatory networks in plants using new methods and data types

Klaas VandepoeleKerstin Kaufmann

Bookchapter in Plant gene regulatory networks : methods and protocols

Prediction of transcription factor regulators and gene regulatory networks in tomato using binding site information

Nicolás Manosalva PérezKlaas Vandepoele

Bookchapter in Plant gene regulatory networks : methods and protocols

Rhizogenic agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development

Lore GryffroyEvi CeulemansNicolás Manosalva PérezJhon Jairo Venegas MolinaAna JaramilloSavio D. RodriguesLiesbeth De MildeVeronique JonckheereMarc Van MontaguBarbara De ConinckKlaas VandepoelePetra Van DammeAlain Goossens et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MINI-EX : integrative inference of single-cell gene regulatory networks in plants

Camilla FerrariNicolás Manosalva PérezKlaas Vandepoele

A1 Journal Article in MOLECULAR PLANT

Identification of growth regulators using cross-species network analysis in plants

Pasquale Luca CurciJie ZhangNiklas MählerCarolin SeyfferthChanaka MannapperumaTim DielsTom Van HautegemDavid JonsenNathaniel StreetTorgeir R HvidstenMagnus HertzbergOve NilssonDirk InzéHilde NelissenKlaas Vandepoele et al.

A1 Journal Article in PLANT PHYSIOLOGY

JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles

Jaime A Castro-MondragonRafael Riudavets-PuigIeva RauluseviciuteRoza Berhanu LemmaLaura TurchiRomain Blanc-MathieuJeremy LucasPaul BoddieAziz KhanNicolás Manosalva PérezOriol FornesTiffany Y LeungAlejandro AguirreFayrouz HammalDaniel SchmelterDamir BaranasicBenoit BallesterAlbin SandelinBoris LenhardKlaas VandepoeleWyeth W WassermanFrançois ParcyAnthony Mathelier et al.

A1 Journal Article in NUCLEIC ACIDS RESEARCH

PLAZA 5.0 : extending the scope and power of comparative and functional genomics in plants

Michiel Van BelFrancesca SilvestriEric M WeitzLukasz KreftAlexander BotzkiFrederik CoppensKlaas Vandepoele

A1 Journal Article in NUCLEIC ACIDS RESEARCH

Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors

Pingtao DingToshiyuki SakaiRam Krishna ShresthaNicolás Manosalva PérezWenbin GuoBruno Pok Man NgouShengbo HeChang LiuXiaoqi FengRunxuan ZhangKlaas VandepoeleDan MacLeanJonathan D G Jones et al.

A1 Journal Article in JOURNAL OF EXPERIMENTAL BOTANY