Research Explorer

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Project

Search schemes for sequence alignment to pan-genome graphs.

Outputs and Outcomes

Publications

Lossless approximate pattern matching : automated design of efficient search schemes

Luca RendersLore DepuydtSven RahmannJan Fostier

A1 Journal Article in JOURNAL OF COMPUTATIONAL BIOLOGY

Faster maximal exact matches with lazy LCP evaluation

Adrián GogaLore DepuydtNathaniel K. BrownJan FostierTravis GagieGonzalo Navarro

Automated design of efficient search schemes for lossless approximate pattern matching

Luca RendersLore DepuydtSven RahmannJan Fostier

Pan-genome de Bruijn graph using the bidirectional FM-index

Lore DepuydtLuca RendersThomas AbeelJan Fostier

A1 Journal Article in BMC BIOINFORMATICS

Approximate pattern matching using search schemes and in-text verification

Luca RendersLore DepuydtJan Fostier