Project

Photoaffinity labelled protein purification to identify novel players involved in lignification 

Code
3G008116
Duration
01 January 2016 → 31 December 2019
Funding
Research Foundation - Flanders (FWO)
Research disciplines
  • Natural sciences
    • Scientific computing
    • Bioinformatics and computational biology
  • Medical and health sciences
    • Bioinformatics and computational biology
    • Bioinformatics and computational biology
    • Public health care
    • Public health services
    • Bioinformatics and computational biology
  • Engineering and technology
    • Scientific computing
Keywords
protein purification lignification
 
Project description

Plants form the cornerstone of the bio-based economy as they can convert solar power into organic compounds. The polysaccharides in their cell wall can be enzymatically converted to sugars that can be fermented into a plethora of products. This process is largely hampered by lignin, an aromatic heteropolymer that covers the polysaccharide matrix. Reducing lignin content or modifying its composition can boost the release of sugars from plant biomass. On the other hand, lignin is a valuable polymer as it can provide lead molecules for a wide variety of chemicals that are nowadays derived from fossil resources. The main limiting factor to exploit or avoid lignin is the current lack of information and insight to steer lignification in a specific desired direction. This project aims at increasing the fundamental knowledge on lignification by using photoaffinity labelled protein purification, a powerful technique that complements the classical approaches used to detect novel players in biochemical pathways. For this approach, synthetic photoactive monolignols are used that can covalently bind to the active sites of proteins. After cross-coupling the compound can be purified together with its interacting proteins. A subset of promising hits will be further studied using a reverse genetic approach. This challenging project relies on the strong collaboration between partners with different expertise and should expand our understanding of lignification.