Research Explorer

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Project

EMBRC 2017-2018

Outputs and Outcomes

Publications

Consolidating Ulva functional genomics: gene editing and new selection systems

Jonas BlommeJúlia ArraizaOlivier De ClerckThomas B. Jacobs

A1 Journal Article in NEW PHYTOLOGIST

To stay or to go : resource diversity alters the dispersal behavior of sympatric cryptic marine nematodes

Rodgee Mae GudenSofie DeryckeTom Moens

A1 Journal Article in PEERJ

Macrofauna community structure and population dynamics in the Flemish bank region : assessing long-term change in the Anthropocene

Sarah BroosGert Van HoeyCarl Van Colen

A1 Journal Article in CONTINENTAL SHELF RESEARCH

Breaking free from references : a consensus-based approach for community profiling with long amplicon nanopore data

Willem StockCoralie RousseauGlen DierickxSofie D'hondtLuz Amadei MartínezSimon M. DittamiLuna van der LoosOlivier De Clerck

A1 Journal Article in BRIEFINGS IN BIOINFORMATICS

Resource diversity mitigates the effects of intraspecific competition in co-occurring cryptic nematode species

Rodgee Mae GudenSofie DeryckeTom Moens

A1 Journal Article in FRONTIERS IN MARINE SCIENCE

The cultivated sea lettuce (Ulva) microbiome : successional and seasonal dynamics

Luna van der LoosCynthia De WildeAnne WillemsOlivier De ClerckSophie Steinhagen

A1 Journal Article in AQUACULTURE

Nematodes alter the taxonomic and functional profiles of benthic bacterial communities : a metatranscriptomic approach

Rodgee Mae GudenAnnelies HaegemanTom RuttinkTom MoensSofie Derycke

A1 Journal Article in MOLECULAR ECOLOGY

Contribution of combined stressors on density and gene expression dynamics of the copepod Temora longicornis in the North Sea

Ilias SemmouriKarel De SchamphelaereFilip Van NieuwerburghDieter DeforceColin JanssenJana Asselman

A1 Journal Article in MOLECULAR ECOLOGY

Non-indigenous seaweeds in the Northeast Atlantic Ocean, the Mediterranean Sea and Macaronesia : a critical synthesis of diversity, spatial and temporal patterns

Luna van der LoosQuinten BafortSamuel BoschEnric BallesterosIgnacio BárbaraEstibaliz BerecibarAurélie BlanfunéKenny BogaertSilke BouckenoogheCharles-Francois BoudouresqueJuliet BrodieEster CecerePilar Díaz-TapiaAschwin H. EngelenKarl GunnarsonSoha Hamdy ShabakaRazy HoffmanVivian HusaÁlvaro IsraelMart KarremansJessica KnoopLine Le GallChristine A. MaggsFrederic MineurManuela ParenteFrank PerkAntonella PetrocelliConxi Rodríguez-PrietoSandrine RuittonMarta SansónEster A. SerrãoAdriano SfrisoKjersti SjøtunValérie Stiger-PouvreauGwladys SurgetErgun TaskinThierry ThibautKonstantinos TsiamisLotte Van De WegheMarc VerlaqueFrédérique ViardSofie VrankenFrédérik LeliaertOlivier De Clerck et al.

A1 Journal Article in EUROPEAN JOURNAL OF PHYCOLOGY

Structure elucidation of the first sex‐inducing pheromone of a diatom

Franziska A. KlapperChristine KielPeter BellstedtWim VyvermanGeorg Pohnert

A1 Journal Article in ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Tracing the introduction of Dictyota acutiloba (Dictyotales, Phaeophyceae) in the Mediterranean Sea, with a reassessment of its geographic distribution

Soria DelvaCamino Fernández de la HozQuinten BafortSofie D'hondtSoha ShabakaSarah Hamdy RashedyAlison R. SherwoodTamar Guy-HaimAlvaro IsraelOlivier De Clerck

A1 Journal Article in EUROPEAN JOURNAL OF PHYCOLOGY

AlgaeTraits : a trait database for (European) seaweeds

Sofie VrankenMarine RobuchonStefanie DekeyzerIgnacio BárbaraInka BartschAurélie BlanfunéCharles-Francois BoudouresqueWim DecockChristophe DestombeBruno de ReviersPilar Díaz-TapiaAnne HerbstRomain JulliardRolf KarezPriit KersenStacy A. Krueger-HadfieldRalph KuhlenkampAkira F. PetersViviana Peña FreireCristina Piñeiro-CorbeiraFabio RindiFlorence RousseauJan RuenessHendrik SchubertKjersti SjøtunMarta SansónDan SmaleThierry ThibautMyriam ValeroLeen VandepitteBart VanhoorneAlba VergésMarc VerlaqueChristophe VieiraLine Le GallFrédérik LeliaertOlivier De Clerck et al.

A1 Journal Article in EARTH SYSTEM SCIENCE DATA

Marine flora of French Polynesia : an updated list using DNA barcoding and traditional approaches

Christophe VieiraMyung Sook KimAntoine De Ramon N'YeurtClaude PayriSofie D'hondtOlivier De ClerckMayalen Zubia

A1 Journal Article in BIOLOGY-BASEL

Temperature increase alters relative fatty acid composition and has negative effects on reproductive output of the benthic copepod Tachidius discipes (copepoda: Harpacticoida)

Julieta Vigliano RelvaCarl Van ColenWissam BarhdadiAisling DalyMarleen De Troch

A1 Journal Article in MARINE BIOLOGY

All quiet on the western front? The evolutionary history of monogeneans (Dactylogyridae: Cichlidogyrus, Onchobdella) infecting a West and Central African tribe of cichlid fishes (Chromidotilapiini)

Tanisha MoonsNikol KmentovaAntoine PariselleTom ArtoisWim BertMaarten P. M. VanhoveArmando J. Cruz-Laufer

A1 Journal Article in PARASITE

Decadal decline of dominant copepod species in the North Sea is associated with ocean warming : importance of marine heatwaves

Ilias SemmouriKarel De SchamphelaereJonas MortelmansJan MeesJana AsselmanColin Janssen

A1 Journal Article in MARINE POLLUTION BULLETIN

Organic matter processing in a [simulated] offshore wind farm ecosystem in current and future climate and aquaculture scenarios

Helena VoetEllen VlaminckCarl Van ColenSamuel BodéPascal BoeckxSteven DegraerTom MoensJan VanaverbekeUlrike Braeckman

A1 Journal Article in SCIENCE OF THE TOTAL ENVIRONMENT

Ocean acidification and warming modify stimulatory benthos effects on sediment functioning: An experimental study on two ecosystem engineers

Ellen VlaminckTom MoensUlrike BraeckmanCarl Van Colen

A1 Journal Article in FRONTIERS IN MARINE SCIENCE

Ulva : an emerging green seaweed model for systems biology

Jonas BlommeThomas WichardThomas B. JacobsOlivier De Clerck

A1 Journal Article in JOURNAL OF PHYCOLOGY

Diversity, systematics and biogeography of French Polynesian Lobophora (Dictyotales, Phaeophyceae)

Christophe VieiraOlivier De ClerckAntoine De Ramon N'YeurtAn-Sofie D'HondtLaurent MilletMyung Sook KimClaude PayriMayalen Zubia

A1 Journal Article in EUROPEAN JOURNAL OF PHYCOLOGY

First records of the non-indigenous green algal species Siphonocladus tropicus (Cladophorales, Chlorophyta) and Caulerpa integerrima (Bryopsidales, Chlorophyta) in the Mediterranean Sea

Razy HoffmanOlivier De ClerckFrédérik Leliaert

A1 Journal Article in EUROPEAN JOURNAL OF PHYCOLOGY

No bacterial-mediated alleviation of thermal stress in a brown seaweed suggests the absence of ecological bacterial rescue effects

Soria DelvaBernard De BaetsJan BaetensOlivier De ClerckWillem Stock

A1 Journal Article in SCIENCE OF THE TOTAL ENVIRONMENT

Climate change effects on the ecophysiology and ecological functioning of an offshore wind farm artificial hard substrate community

Helena VoetCarl Van ColenJan Vanaverbeke

A1 Journal Article in SCIENCE OF THE TOTAL ENVIRONMENT

Microbiome differentiation among coexisting nematode species in estuarine microhabitats : a metagenetic analysis

Anna-Maria VafeiadouSofie DeryckeAnnelien RigauxNele De MeesterRodgee Mae GudenTom Moens

A1 Journal Article in FRONTIERS IN MARINE SCIENCE

Phylogenetic position of Newhousia (Dictyotales, Phaeophyceae) and the description of N. sumayensis sp. nov. from Guam

Christophe VieiraTom SchilsHiroshi KawaiSofie D'hondtMonica O. PaianoAlison R. SherwoodOlivier De ClerckMayalen Zubia

A1 Journal Article in PHYCOLOGIA

More than just hitchhikers : a survey of bacterial communities associated with diatoms originating from sea turtles

Klara FilekLiesbeth LebbeAnne WillemsPeter ChaerleWim VyvermanMarta ZizekSuncica Bosak

A1 Journal Article in FEMS MICROBIOLOGY ECOLOGY

Characterization of the complete mitochondrial genome of the Atlantic seabob shrimp Xiphopenaeus kroyeri Heller, 1862 (Decapoda: Dendrobranchiata: Penaeidae), with insights into the phylogeny of Penaeidae

Timothy J. CroninIsabelle ConradThomas KerkhoveBart HellemansMarleen De TrochFilip A. M. VolckaertJ. Antonio Baeza

A1 Journal Article in JOURNAL OF CRUSTACEAN BIOLOGY

Paraburkholderia gardini sp. nov. and Paraburkholderia saeva sp. nov. : novel aromatic compound degrading bacteria isolated from garden and forest soil samples

Sarah VanwijnsbergheCharlotte PeetersMargo CnockaertEvelien De CanckPeter Vandamme

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Seaweeds as a promising resource for blue economy development in Tunisia : current state, opportunities, and challenges

Leila KtariLeila Chebil AjjabiOlivier De ClerckJuan Luis Gomez PinchettiCeline Rebours

A1 Journal Article in JOURNAL OF APPLIED PHYCOLOGY

Maximizing nutrient recycling from digestate for production of protein-rich microalgae for animal feed application

Jai Sankar SeelamMarcella Fernandes De SouzaPeter ChaerleBernard WillemsEvi MichelsWim VyvermanErik Meers

A1 Journal Article in CHEMOSPHERE

Transcriptional dynamics of gametogenesis in the green seaweed Ulva mutabilis identifies an RWP-RK transcription factor linked to reproduction

Xiaojie LiuJonas BlommeKenny BogaertSofie D'hondtThomas WichardDieter DeforceFilip Van NieuwerburghOlivier De Clerck

A1 Journal Article in BMC PLANT BIOLOGY

Auxin’s origin : do PILS hold the key?

Kenny BogaertJonas BlommeTom BeeckmanOlivier De Clerck

A1 Journal Article in TRENDS IN PLANT SCIENCE

Marine macroalgal biodiversity of northern Madagascar : morpho-genetic systematics and implications of anthropic impacts for conservation

Christophe VieiraAntoine De Ramon N'YeurtFaravavy A. RasoamanendrikaSofie D'hondtLan-Anh T. TranDidier Van den SpiegelHiroshi KawaiOlivier De Clerck

A1 Journal Article in BIODIVERSITY AND CONSERVATION

French Mediterranean and Atlantic populations of the brown algal genus Taonia (Dictyotales) display differences in phylogeny, surface metabolomes and epibacterial communities

Benoit PaixChristophe VieiraPhilippe PotinCatherine LeblancOlivier De ClerckJean-Francois BriandGerald Culioli

A1 Journal Article in ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS

Lobophora (Dictyotales, Phaeophyceae) from the western Indian Ocean : diversity and biogeography

Christophe VieiraFaravavy A. RasoamanendrikaMayalen ZubiaJohn J. BoltonRobert J. AndersonAschwin H. EngelenSofie D'HondtFrédérik LeliaertClaude PayriHiroshi KawaiOlivier De Clerck et al.

A1 Journal Article in SOUTH AFRICAN JOURNAL OF BOTANY

Pheromone mediated sexual reproduction of pennate diatom Cylindrotheca closterium

Franziska KlapperSien AudoorWim VyvermanGeorg Pohnert

A1 Journal Article in JOURNAL OF CHEMICAL ECOLOGY

A multi-faceted approach to understand how resource diversity can mediate the coexistence of cryptic marine nematode species

Rodgee Mae Guden

A1 Journal Article in FRONTIERS IN MARINE SCIENCE

Biosynthesis of ditropolonyl sulfide, an antibacterial compound produced by Burkholderia cepacia complex strain R-12632

Eliza DepoorterTom CoenyePeter Vandamme

A1 Journal Article in APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sea spray aerosols contain the major component of human lung surfactant

Emmanuel Van AckerMaarten De RijckeZixia LiuJana AsselmanKarel De SchamphelaereLynn VanhaeckeColin Janssen

A1 Journal Article in ENVIRONMENTAL SCIENCE & TECHNOLOGY

Altering the sex pheromone cyclo(L-Pro-L-Pro) of the diatom Seminavis robusta towards a chemical probe

Eli BonneureAmber De BaetsSam De DeckerKoen Van den BergeLieven ClementWim VyvermanSven Mangelinckx

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES