Research Explorer

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Researcher

Yao-Cheng Lin

Awards & Distinctions

28 Results

2019

Draft genome assembly of the false spider mite Brevipalpus yothersi

Denise NaviaValdenice M. NovelliStephane RombautsJuliana Freitas-AstuaRenata Santos de MendoncaMaria Andreia NunesMarcos A. MachadoYao-Cheng LinPhuong LEZaichao Zhang et al.

A2 Journal Article in MICROBIOLOGY RESOURCE ANNOUNCEMENTS

Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos

Andreia S. RodriguesInês ChavesBruno Vasques CostaYao-Cheng LinSusana LopesAna MilhinhosYves Van de PeerCélia M. Miguel

A1 Journal Article in SCIENTIFIC REPORTS

2018

Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen

Yao-Cheng LinJing WangNicolas DelhommeBastian SchiffthalerGorel SundstromAndrea ZuccoloBjorn NystedtTorgeir R HvidstenAmanda de la TorreRosa M Cossu et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

2017

Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips

Brenda D WingfieldDave K BergerEmma T SteenkampHye-Jin LimTuan A DuongBurton H BluhmZ Wilhelm De BeerLieschen De VosG FourieKershney Naidoo et al.

A1 Journal Article in IMA FUNGUS

The Apostasia genome and the evolution of orchids

Guo-Qiang ZhangKe-Wei LiuZhen LiRolf LohausYu-Yun HsiaoShan-Ce NiuJie-Yu WangYao-Cheng LinQing XuLi-Jun Chen et al.

A1 Journal Article in NATURE

2016

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

Jeanine L OlsenPierre RouzéBram VerhelstYao-Cheng LinTill BayerJonas CollenEmanuela DattoloEmanuele De PaoliSimon DittamiFlorian Maumus et al.

A1 Journal Article in NATURE

2015

Comparative in silico analysis of SSRs in coding regions of high confidence predicted genes in Norway spruce (Picea abies) and Loblolly pine (Pinus taeda)

Sonali Sachin RanadeYao-Cheng LinYves Van de PeerMaria Rosario García-Gil

A1 Journal Article in BMC GENETICS

Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays

Sarieh GhorbaniYao-Cheng LinBoris ParizotAna Fernandez SalinaMaria NjoYves Van de PeerTom BeeckmanPierre Hilson

A1 Journal Article in JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide analysis reveals diverged patterns of codon bias, gene expression, and rates of sequence evolution in Picea gene families

Amanda R De La TorreYao-Cheng LinYves Van de PeerPär K Ingvarsson

A1 Journal Article in GENOME BIOLOGY AND EVOLUTION

Serendipitous meta-transcriptomics : the fungal community of Norway spruce (Picea abies)

Nicolas DelhommeGorel SundstromNeda ZamaniHenrik LantzYao-Cheng LinTorgeir R HvidstenMarc P HoppnerPatric JernYves Van de PeerJoakim Lundeberg et al.

A1 Journal Article in PLOS ONE

The plant genome integrative explorer resource : PlantGenIE.org

David SundellChanaka MannapperumaSergiu NetoteaNicolas DelhommeYao-Cheng LinAndreas SjödinYves Van de PeerStefan JanssonTorgeir R HvidstenNathaniel R Street

A1 Journal Article in NEW PHYTOLOGIST

2014

Comparative in silico analysis of EST-SSRs in angiosperm and gymnosperm tree genera

Sonali Sachin RanadeYao-Cheng LinAndrea ZuccoloYves Van de PeerMaria del Rosario Garcia-Gil

A1 Journal Article in BMC PLANT BIOLOGY

Fast and accurate cDNA mapping and splice site identification

Michaël VyvermanDieter De SmedtYao-Cheng LinLieven SterckBernard De BaetsVeerle FackPeter Dawyndt

Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations

Yao-Cheng LinMorgane BooneLeander MeurisIrma LemmensNadine Van RoyArne SoeteJoke ReumersMatthieu MoisseStéphane PlaisanceRadoje Drmanac et al.

A1 Journal Article in NATURE COMMUNICATIONS

miRNA profiling in leaf and cork tissues of Quercus suber reveals novel miRNAs and tissue-specific expression patterns

Inês ChavesYao-Cheng LinC Pinto-RicardoYves Van de PeerCélia Miguel

A1 Journal Article in TREE GENETICS & GENOMES

2013

Candida bombicola as a platform organism for the production of tailor-made biomolecules

Sophie RoelantsKaren SaerensThibaut DeryckeBing LiYao-Cheng LinYves Van de PeerSofie De MaeseneireInge Van BogaertWim Soetaert

A1 Journal Article in BIOTECHNOLOGY AND BIOENGINEERING

SILAC-based proteome analysis of Starmerella bombicola sophorolipid production

Katarzyna CiesielskaBing LiSara GroeneboerInge Van BogaertYao-Cheng LinWim SoetaertYves Van de PeerBart Devreese

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

The Norway spruce genome sequence and conifer genome evolution

Björn NystedtNathaniel R StreetAnna WetterbomAndrea ZuccoloYao-Cheng LinDouglas G ScofieldFrancesco VezziNicolas DelhommeStefania GiacomelloAndrey Alexeyenko et al.

A1 Journal Article in NATURE

The biosynthetic gene cluster for sophorolipids : a biotechnological interesting biosurfactant produced by Starmerella bombicola

Inge Van BogaertKevin HolvoetSophie RoelantsBing LiYao-Cheng LinYves Van de PeerWim Soetaert

A1 Journal Article in MOLECULAR MICROBIOLOGY

2012

A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust)

Stéphane HacquardDavid L JolyYao-Cheng LinEmilie TisserantNicolas FeauChristine DelaruelleValérie LeguéAnnegret KohlerPhilippe TanguayBenjamin Petre et al.

A1 Journal Article in MOLECULAR PLANT-MICROBE INTERACTIONS

GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses

Ryan WhitfordAna Fernandez SalinaRicardo Tejos UlloaAmparo Cuéllar PérezJürgen Kleine-VehnSteffen VannesteAndrzej DrozdzeckiJohannes LeitnerLindy AbasMaarten Aerts et al.

A1 Journal Article in DEVELOPMENTAL CELL

2011

Annotation and comparative analysis of fungal genomes: a hitchhiker's guide to genomics

Yao-Cheng LinYves Van de Peer

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

Emilie ChancerelCamille LepoittevinGregoire Le ProvostYao-Cheng LinJuan Pablo Jaramillo-CorreaAndrew J EckertJill L WegrzynDiana ZelenikaAnne BolandJean-Marc Frigerio et al.

A1 Journal Article in BMC GENOMICS

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Sébastien DuplessisChristina A CuomoYao-Cheng LinAndrea AertsEmilie TisserantClaire Veneault-FourreyDavid L JolyStéphane HacquardJoëlle AmselemBrandi L Cantarel et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

2009

Genome sequence of the recombinant protein production host Pichia pastoris

Kristof De SchutterYao-Cheng LinPetra TielsAnnelies Van HeckeS GlinkaJ Weber-LehmannPierre RouzéYves Van de PeerNico Callewaert

A1 Journal Article in NATURE BIOTECHNOLOGY

2008

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

F MartinA AertsD AhrénA BrunEGJ DanchinF DuchaussoyJ GibonA KohlerE LindquistV Pereda et al.

A1 Journal Article in NATURE

The rice annotation project database (RAP-DB): 2008 update

T TANAKABA ANTONIOS KIKUCHIT MATSUMOTOY NAGAMURAH NUMAH SAKAIJ WUT ITOHT SASAKI et al.

A1 Journal Article in NUCLEIC ACIDS RESEARCH

2005

The map-based sequence of the rice genome

T MATSUMOTOJZ WUH KANAMORIY KATAYOSEM FUJISAWAN NAMIKIH MIZUNOK YAMAMOTOBA ANTONIOT BABA et al.

A1 Journal Article in NATURE