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Researcher
Wim Van Criekinge
Profile
Projects
Publications
Activities
250
Results
2022
Exploring PhaLP, an open source portal for Phage Lytic Proteins, to engineer modular enzybiotics against vancomycin-resistant Enterococcus faecalis
Bjorn Criel
Wim Van Criekinge
Yves Briers
C3
Conference
2022
Identification and characterization of eukaryotic small open reading frames and microproteins
Marlies Peeters
Gerben Menschaert
Wim Van Criekinge
Dissertation
2022
Unraveling the molecular framework of de novo shoot organogenesis in Arabidopsis thaliana
Robin Lardon
Danny Geelen
Wim Van Criekinge
Dissertation
2022
2021
Clinical use of the SelectMDx urinary-biomarker test with or without mpMRI in prostate cancer diagnosis : a prospective, multicenter study in biopsy-naive men
Wim Van Criekinge
A1
Journal Article
in
PROSTATE CANCER AND PROSTATIC DISEASES
2021
DNA methylation regulates transcription factor-specific neurodevelopmental but not sexually dimorphic gene expression dynamics in zebra finch telencephalon
Louis Coussement
Sandra Steyaert
Jeroen Galle
Ellen De Meester
Sarah De Keulenaer
Wim Van Criekinge
Tim De Meyer
A1
Journal Article
in
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
2021
Evaluation of the new American Urological Association guidelines risk classification for hematuria
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF UROLOGY
2021
PhaLP : a database for the study of phage lytic proteins and their evolution
Bjorn Criel
Steff Taelman
Wim Van Criekinge
Michiel Stock
Yves Briers
A1
Journal Article
in
VIRUSES-BASEL
2021
Single cell epigenetic visualization assay
Sam Kint
Wim Van Criekinge
Linos Vandekerckhove
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2021
Spectral prediction features as a solution for the search space size problem in proteogenomics
Steven Verbruggen
Ralf Gabriels
Anna Matsaroki
Hendrik Van de Voorde
Sven Degroeve
Lennart Martens
Wim Van Criekinge
Gerben Menschaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2021
2020
A urine based genomic assay to triage patients with hematuria for cystoscopy
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF UROLOGY
2020
Exploring allele-specific expression mechanisms in health and disease
Tine Goovaerts
Tim De Meyer
Wim Van Criekinge
Dissertation
2020
Exploring methods to measure DNA methylation in the context of HIV-1
Sam Kint
Wim Van Criekinge
Linos Vandekerckhove
Wim Trypsteen
Dissertation
2020
The elusive source of HIV-1 rebound after treatment interruption
Laurens Lambrechts
Basiel Cole
Marie-Angélique De Scheerder
Ytse Noppe
Wim Van Criekinge
Linos Vandekerckhove
C3
Conference
2020
The potential influence of human Y-chromosome haplogroup on COVID-19 prevalence and mortality
Joris Delanghe
Marc De Buyzere
Sander De Bruyne
Wim Van Criekinge
Marijn Speeckaert
A1
Journal Article
in
ANNALS OF ONCOLOGY
2020
The proteogenomic hunt for new proteoforms using ribosome profiling
Steven Verbruggen
Wim Van Criekinge
Gerben Menschaert
Petra Van Damme
Dissertation
2020
Underestimated effect of intragenic HIV-1 DNA methylation on viral transcription in infected individuals
Sam Kint
Wim Trypsteen
Ward De Spiegelaere
Eva Malatinková
Tim De Meyer
Wim Van Criekinge
Linos Vandekerckhove
A1
Journal Article
in
CLINICAL EPIGENETICS
2020
Validation of a 2-gene mRNA urine test for the detection of >= GG2 prostate cancer in an opportunistic screening population
Wim Van Criekinge
A1
Journal Article
in
PROSTATE
2020
2019
A proteogenomic endeavour investigating the unexplored domain of putatively coding small open reading frames
Volodimir Olexiouk
Wim Van Criekinge
Gerben Menschaert
Dissertation
2019
Clinically significant prostate cancer diagnosed using a urinary molecular biomarker-based risk score : two case reports
Wim Van Criekinge
A1
Journal Article
in
BMC UROLOGY
2019
Cost-effectiveness of SelectMDx for prostate cancer in four European countries : a comparative modeling study
Wim Van Criekinge
A1
Journal Article
in
PROSTATE CANCER AND PROSTATIC DISEASES
2019
Evaluation of an epigenetic assay for predicting repeat prostate biopsy outcome in African American men
Wim Van Criekinge
A1
Journal Article
in
UROLOGY
2019
MEXPRESS update 2019
Wim Van Criekinge
Tim De Meyer
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2019
MGMT promoter methylation cutoff with safety margin for selecting glioblastoma patients into trials omitting temozolomide : a pooled analysis of four clinical trials
Wim Van Criekinge
A1
Journal Article
in
CLINICAL CANCER RESEARCH
2019
Multicenter optimization and validation of a 2-gene mRNA urine test for detection of clinically significant prostate cancer before initial prostate biopsy
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF UROLOGY
2019
PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms
Steven Verbruggen
Elvis Ndah
Wim Van Criekinge
Gerben Menschaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2019
Urinary molecular biomarker test impacts prostate biopsy decision making in clinical practice
Wim Van Criekinge
A2
Journal Article
in
UROLOGY PRACTICE
2019
2018
A comprehensive overview of genomic imprinting in breast and its deregulation in cancer
Tine Goovaerts
Sandra Steyaert
Jeroen Galle
Olivier Thas
Wim Van Criekinge
Tim De Meyer
A1
Journal Article
in
NATURE COMMUNICATIONS
2018
An update on sORFs.org : a repository of small ORFs identified by ribosome profiling
Volodimir Olexiouk
Wim Van Criekinge
Gerben Menschaert
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2018
Analysis of DNA methylation in cancer : location revisited
Wim Van Criekinge
Tim De Meyer
A1
Journal Article
in
NATURE REVIEWS CLINICAL ONCOLOGY
2018
Cost-effectiveness of SelectMDX for prostate cancer in four European countries : a modelling study
Wim Van Criekinge
C3
Conference
2018
Epigenetic markers in circulating cell-free DNA as prognostic markers for survival of castration-resistant prostate cancer patients
Wim Van Criekinge
A1
Journal Article
in
PROSTATE
2018
Evaluation of bisulfite kits for DNA methylation profiling in terms of DNA fragmentation and DNA recovery using digital PCR
Sam Kint
Ward De Spiegelaere
Jonas De Kesel
Linos Vandekerckhove
Wim Van Criekinge
A1
Journal Article
in
PLOS ONE
2018
Evaluation of two urinary RNA biomarker tests with an epigenetic DNA assay for the identification of men with high-grade prostate cancer
Wim Van Criekinge
C3
Conference
2018
Exploratory analysis of the human breast DNA methylation profile upon soymilk exposure
Louis Coussement
Selin Bolca
Wim Van Criekinge
Geert Trooskens
Klaas Mensaert
Nathalie Roche
Phillip Blondeel
Herman Depypere
Tim De Meyer
A1
Journal Article
in
SCIENTIFIC REPORTS
2018
Integrated transcriptomic and epigenomic analysis of ovarian cancer reveals epigenetically silenced GULP1
Maté Ongenaert
Wim Van Criekinge
A1
Journal Article
in
CANCER LETTERS
2018
Non-invasive differential diagnosis of neuroblastoma with other paediatric solid tumors using methylation profiling of circulating cell-free DNA
Ruben Van Paemel
Anneleen Decock
Charlotte Vandeputte
Tim Lammens
Genevieve Laureys
Franki Speleman
Wim Van Criekinge
Nadine Van Roy
Jo Vandesompele
Katleen De Preter
Bram De Wilde
C3
Conference
2018
Non-invasive differential diagnosis of neuroblastoma with other paediatric solid tumors using methylation profiling of circulating cell-free DNA
Ruben Van Paemel
Anneleen Decock
Charlotte Vandeputte
Tim Lammens
Genevieve Laureys
Franki Speleman
Wim Van Criekinge
Nadine Van Roy
Jo Vandesompele
Katleen De Preter
Bram De Wilde
C3
Conference
2018
Non-invasive differential diagnosis of neuroblastoma with other paediatric solid tumors using methylation profiling of circulating cell-free DNA
Ruben Van Paemel
Anneleen Decock
Charlotte Vandeputte
Tim Lammens
Genevieve Laureys
Franki Speleman
Wim Van Criekinge
Nadine Van Roy
Jo Vandesompele
Katleen De Preter
Bram De Wilde
C3
Conference
2018
Prospective validation of a diagnostic urine test for bladder cancer : the Hematuria study
Wim Van Criekinge
C3
Conference
2018
Stable oxidative cytosine modifications accumulate in cardiac mesenchymal cells from type2 diabetes patients : rescue by α-ketoglutarate and TET-TDG functional reactivation
Wim Van Criekinge
A1
Journal Article
in
CIRCULATION RESEARCH
2018
The potential of methylome sequencing in the diagnostic work : up of pediatric solid tumors
Ruben Van Paemel
Charlotte Vandeputte
Bram De Wilde
Katleen De Preter
Nadine Van Roy
Jo Vandesompele
Tim Lammens
Wim Van Criekinge
Nico Callewaert
Anneleen Decock
C3
Conference
2018
2017
A four-gene promoter methylation marker panel consisting of GREM1, NEURL, LAD1, and NEFH predicts survival of clear cell renal cell cancer patients
Tim De Meyer
Leander Van Neste
Wim Van Criekinge
A1
Journal Article
in
CLINICAL CANCER RESEARCH
2017
A urinary biomarker-based risk score correlates with multiparametric MRI for prostate cancer detection
Wim Van Criekinge
A1
Journal Article
in
PROSTATE
2017
Clinical performance of an epigenetic assay to identify occult high-grade prostate cancer in African American men
Wim Van Criekinge
C3
Conference
2017
Cost-effectiveness of a new urinary biomarker-based risk score compared to standard of care in prostate cancer diagnostics : a decision analytical model
Wim Van Criekinge
A1
Journal Article
in
BJU INTERNATIONAL
2017
Decoy receptor 1 (DCR1) promoter hypermethylation and response to irinotecan in metastatic colorectal cancer
Geert Trooskens
Tim De Meyer
Wim Van Criekinge
A1
Journal Article
in
ONCOTARGET
2017
Differential analysis of genome-wide methylation and gene expression in mesenchymal stem cells of patients with fractures and osteoarthritis
Wim Van Criekinge
A1
Journal Article
in
EPIGENETICS
2017
Epigenetic profiling in cancer
Geert Trooskens
Wim Van Criekinge
Tim De Meyer
Dissertation
2017
Epigenetic risk score improves prostate cancer risk assessment
Wim Van Criekinge
A1
Journal Article
in
PROSTATE
2017
Epigenetic sampling effects : nephrectomy modifies the clear cell renal cell cancer methylome
Christophe Van Neste
Wim Van Criekinge
Dieter Deforce
Filip Van Nieuwerburgh
Tim De Meyer
A1
Journal Article
in
CELLULAR ONCOLOGY
2017
Genome-wide DNA methylation profiling reveals methylation markers associated with 3q gain for detection of cervical precancer and cancer
Geert Trooskens
Johan Vandersmissen
Wim Van Criekinge
A1
Journal Article
in
CLINICAL CANCER RESEARCH
2017
Immune cell profiling of melanoma metastases from patients treated with TriMixDC-MEL dendritic cell therapy in combination with ipilimumab
Wim Van Criekinge
C3
Conference
2017
Methylome analysis of extreme chemoresponsive patients identifies novel markers of platinum sensitivity in high-grade serous ovarian cancer
Tim De Meyer
Wim Van Criekinge
A1
Journal Article
in
BMC MEDICINE
2017
Novel stool-based protein biomarkers for improved colorectal cancer screening : a case-control study
Wim Van Criekinge
A1
Journal Article
in
ANNALS OF INTERNAL MEDICINE
2017
Prospective validation of a diagnostic urine test for bladder cancer : the HEMAturia study
Wim Van Criekinge
C3
Conference
2017
The microbiome in posttraumatic stress disorder and trauma-exposed controls : an exploratory study
Wim Van Criekinge
A1
Journal Article
in
PSYCHOSOMATIC MEDICINE
2017
Validation of a DNA methylation-mutation urine assay to select patients with hematuria for cystoscopy
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF UROLOGY
2017
2016
A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq
Sandra Steyaert
Jeroen Galle
Ellen De Meester
Sarah De Keulenaer
Wim Van Criekinge
Tim De Meyer
A1
Journal Article
in
SCIENTIFIC REPORTS
2016
Ability of an epigenetic assay to identify anterior prostate tumors based on a negative 12-core biopsy
Wim Van Criekinge
C3
Conference
2016
BMP-SMAD signaling regulates lineage priming, but is dispensable for self-renewal in mouse embryonic stem cells
Dieter Deforce
Wim Van Criekinge
Susana Marina Chuva de Sousa Lopes
A1
Journal Article
in
STEM CELL REPORTS
2016
Clinical utility of an epigenetic assay to reduce unnecessary repeat prostate biopsies
Wim Van Criekinge
C3
Conference
2016
Combined DNA-methylation intensity and clinical risk score to stratify patients for high-grade disease
Wim Van Criekinge
C3
Conference
2016
DNA methylation profiling of primary neuroblastoma tumors using methyl-CpG-binding domain sequencing
Anneleen Decock
Maté Ongenaert
Wim Van Criekinge
Franki Speleman
Jo Vandesompele
A1
Journal Article
in
SCIENTIFIC DATA
2016
Detection of high-grade prostate cancer using a urinary molecular biomarker-based risk score
Geert Trooskens
Wim Van Criekinge
A1
Journal Article
in
EUROPEAN UROLOGY
2016
Developing bioinformatics applications for the analysis of epigenetic next-generation sequencing data
Sandra Steyaert
Tim De Meyer
Wim Van Criekinge
Dissertation
2016
Discovery of new methylation markers to improve screening for cervical intraepithelial neoplasia grade 2/3
Wim Van Criekinge
Tim De Meyer
Simon Denil
A1
Journal Article
in
CLINICAL EPIGENETICS
2016
Dynamic epigenetic changes to VHL occur with sunitinib in metastatic clear cell renal cancer
Christophe Van Neste
Dieter Deforce
Filip Van Nieuwerburgh
Geert Trooskens
Wim Van Criekinge
Tim De Meyer
A1
Journal Article
in
ONCOTARGET
2016
Evaluation of an epigenetic profile for the detection of bladder cancer in patients with hematuria
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF UROLOGY
2016
Forensic Loci Allele Database (FLAD) : automatically generated, permanent identifiers for sequenced forensic alleles
Christophe Van Neste
Wim Van Criekinge
Dieter Deforce
Filip Van Nieuwerburgh
A1
Journal Article
in
FORENSIC SCIENCE INTERNATIONAL-GENETICS
2016
Genome-wide methylome analysis using MethylCap-seq uncovers 4 hypermethylated markers with high sensitivity for both adeno- and squamous-cell cervical carcinoma
Tim De Meyer
Wim Van Criekinge
A1
Journal Article
in
ONCOTARGET
2016
Identification and validation of WISP1 as an epigenetic regulator of metastasis in oral squamous cell carcinoma
Wim Van Criekinge
Tim De Meyer
Simon Denil
A1
Journal Article
in
GENES CHROMOSOMES & CANCER
2016
Identification of high-grade prostate cancer using urine-based molecular biomarkers combined with clinical risk factors
Geert Trooskens
Wim Van Criekinge
C3
Conference
2016
Molecular and epigenetic features of melanomas and tumor immune microenvironment linked to durable remission to ipilimumab-based immunotherapy in metastatic patients
Alexander Koch
Wim Van Criekinge
Tim De Meyer
A1
Journal Article
in
JOURNAL OF TRANSLATIONAL MEDICINE
2016
RAB25 expression is epigenetically downregulated in oral and oropharyngeal squamous cell carcinoma with lymph node metastasis
Wim Van Criekinge
Tim De Meyer
Simon Denil
A1
Journal Article
in
EPIGENETICS
2016
Risk score predicts high-grade prostate cancer in DNA-methylation positive, histopathologically negative biopsies
Wim Van Criekinge
A1
Journal Article
in
PROSTATE
2016
WRN promoter CpG island hypermethylation does not predict more favorable outcomes for patients with metastatic colorectal cancer treated with irinotecan-based therapy
Geert Trooskens
Wim Van Criekinge
A1
Journal Article
in
CLINICAL CANCER RESEARCH
2016
2015
Different approaches to measuring gene expression and DNA methylation and their application in cancer research
Alexander Koch
Wim Van Criekinge
Tim De Meyer
Gerben Menschaert
Dissertation
2015
Effect of sunitinib treatment on mutations and methylation in metastatic renal cancer
Christophe Van Neste
Geert Trooskens
Wim Van Criekinge
Tim De Meyer
C3
Conference
2015
Epigenetic assay stratifies prostate cancer patients' risk for aggressiveness
Wim Van Criekinge
C3
Conference
2015
Epigenetic profiling of cardiovascular ageing
Simon Denil
Tim De Meyer
Wim Van Criekinge
Sofie Bekaert
Dissertation
2015
Forensic massively parallel sequencing data analysis tool: implementation of MyFLq as a standalone web- and Illumina BaseSpace®-application
Christophe Van Neste
Yannick Gansemans
Dieter De Coninck
David Van Hoofstat
Wim Van Criekinge
Dieter Deforce
Filip Van Nieuwerburgh
A1
Journal Article
in
FORENSIC SCIENCE INTERNATIONAL-GENETICS
2015
Genome-wide DNA methylation detection by MethylCap-seq and Infinium HumanMethylation450 BeadChips: an independent large-scale comparison
Tim De Meyer
Geert Trooskens
Wim Van Criekinge
A1
Journal Article
in
SCIENTIFIC REPORTS
2015
Global DNA methylation analysis of human atherosclerotic plaques reveals extensive genomic hypomethylation and reactivation at imprinted locus 14q32 involving induction of a miRNA cluster
Wim Van Criekinge
A1
Journal Article
in
EUROPEAN HEART JOURNAL
2015
Identification of a predictive signature based on immunohistochemical (IHC), RNA-seq and epigenetic profiling of melanoma metastases for response to ipilimumab-based immunotherapy
Tim De Meyer
Wim Van Criekinge
C3
Conference
2015
MEXPRESS : visualizing expression, DNA methylation and clinical TCGA data
Alexander Koch
Tim De Meyer
Wim Van Criekinge
A1
Journal Article
in
BMC GENOMICS
2015
Micropeptides as non-classical bioactive peptides in Eukaryotes, a ribosome profiling centered approach
Jeroen Crappé
Wim Van Criekinge
Gerben Menschaert
Dissertation
2015
Mining for viral fragments in methylation enriched sequencing data
Klaas Mensaert
Wim Van Criekinge
Olivier Thas
Tim De Meyer
A1
Journal Article
in
FRONTIERS IN GENETICS
2015
PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration
Jeroen Crappé
Elvis Ndah
Alexander Koch
Sandra Steyaert
Daria Fijalkowska
Sarah De Keulenaer
Ellen De Meester
Tim De Meyer
Wim Van Criekinge
Petra Van Damme
Gerben Menschaert
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2015
Porting forensic DNA analysis to deep sequencing
Christophe Van Neste
Dieter Deforce
Wim Van Criekinge
Filip Van Nieuwerburgh
Dissertation
2015
Risk stratification of aggressive prostate cancer based on combined epigenetic and clinical data of men with initial cancer-negative biopsies
Wim Van Criekinge
C3
Conference
2015
Spectrin Repeat Containing Nuclear Envelope 1 and Forkhead Box Protein E1 are promising markers for the detection of colorectal cancer in blood
Wim Van Criekinge
A1
Journal Article
in
CANCER PREVENTION RESEARCH
2015
WRN Promoter CpG island hypermethylation does not predict a favourable outcome for irinotecan-treated metastatic colorectal cancer patients
Geert Trooskens
Wim Van Criekinge
C3
Conference
2015
We are all individuals...: bioinformatics in the personalized medicine era
Wim Van Criekinge
A1
Journal Article
in
CELLULAR ONCOLOGY
2015
2014
A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites
Alexander Koch
Daria Fijalkowska
Sandra Steyaert
Elvis Ndah
Jeroen Crappé
Sarah De Keulenaer
Ellen De Meester
Kris Gevaert
Wim Van Criekinge
Petra Van Damme
Gerben Menschaert
A1
Journal Article
in
PROTEOMICS
2014
Bacterial diversity assessment in Antarctic terrestrial and aquatic microbial mats : a comparison between bidirectional pyrosequencing and cultivation
Bjorn Tytgat
Elie Verleyen
Dagmar Obbels
Karolien Peeters
Aaike De Wever
Sofie D'hondt
Tim De Meyer
Wim Van Criekinge
Wim Vyverman
Anne Willems
A1
Journal Article
in
PLOS ONE
2014
Clinical validation of an epigenetic assay to predict negative histopathological results in repeat prostate biopsies
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF UROLOGY
2014
Combination of gene copy gain and epigenetic deregulation are associated with the aberrant expression of a stem cell related HOX-signature in glioblastoma
Wim Van Criekinge
C3
Conference
2014
Emerging evidence for CHFR as a cancer biomarker : from tumor biology to precision medicine
Wim Van Criekinge
A1
Journal Article
in
CANCER AND METASTASIS REVIEWS
2014
Epigenetic profiling of prostate cancer tissue to identify men with high-risk disease
Wim Van Criekinge
C3
Conference
2014
Evaluation of different methods to assess homologous recombination status and sensitivity to PARP inhibitors in ovarian cancer
Leander Van Neste
Wim Van Criekinge
C3
Conference
2014
Food-derived opioid peptides inhibit cysteine uptake with redox and epigenetic consequences
Geert Trooskens
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF NUTRITIONAL BIOCHEMISTRY
2014
Genome-wide methylation profiling reveals Zinc finger protein 516 (ZNF516) and FK-506binding protein 6 (FKBP6) promoters frequently methylated in cervical neoplasia, associated with HPV status and ethnicity in a Chilean population
Wim Van Criekinge
A1
Journal Article
in
EPIGENETICS
2014
Identification by array comparative genomic hybridization of a new amplicon on chromosome 17q highly recurrent in BRCA1 mutated triple negative breast cancer
Wim Van Criekinge
A1
Journal Article
in
BREAST CANCER RESEARCH
2014
Illumina sequencing of 15 deafness genes using fragmented amplicons
Filip Van Nieuwerburgh
Sarah De Keulenaer
Joachim De Schrijver
Jo Vandesompele
Wim Van Criekinge
Paul Coucke
Dieter Deforce
A2
Journal Article
in
BMC RESEARCH NOTES
2014
Little things make big things happen : a summary of micropeptide encoding genes
Jeroen Crappé
Wim Van Criekinge
Gerben Menschaert
A2
Journal Article
in
EUPA OPEN PROTEOMICS
2014
MEN1 Gene mutation and reduced expression are associated with poor prognosis in pulmonary carcinoids
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM
2014
Methylation-mediated repression of PRDM14 contributes to apoptosis evasion in HPV-positive cancers
Wim Van Criekinge
A1
Journal Article
in
CARCINOGENESIS
2014
My-Forensic-Loci-queries (MyFLq) framework for analysis of forensic STR data generated by massive parallel sequencing
Christophe Van Neste
Mado Vandewoestyne
Wim Van Criekinge
Dieter Deforce
Filip Van Nieuwerburgh
A1
Journal Article
in
FORENSIC SCIENCE INTERNATIONAL-GENETICS
2014
N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men
Petra Van Damme
Daria Fijalkowska
Wim Van Criekinge
Gerben Menschaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2014
Next-generation technologies and data analytical approaches for epigenomics
Klaas Mensaert
Simon Denil
Geert Trooskens
Wim Van Criekinge
Olivier Thas
Tim De Meyer
A1
Journal Article
in
ENVIRONMENTAL AND MOLECULAR MUTAGENESIS
2014
On cross-sectional associations of leukocyte telomere length with cardiac systolic, diastolic and vascular function: the Asklepios study
Simon Denil
Ernst Rietzschel
Marc De Buyzere
Caroline Van daele
Patrick Segers
Dirk De Bacquer
Wim Van Criekinge
Sofie Bekaert
Thierry Gillebert
Tim De Meyer
A1
Journal Article
in
PLOS ONE
2014
Promoter CpG island hypermethylation of Decoy Receptor 1 (DCR1) is associated with poor response to irinotecan in metastatic colorectal cancer
Wim Van Criekinge
C3
Conference
2014
SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data
Sandra Steyaert
Wim Van Criekinge
Simon Denil
Klaas Mensaert
Wim Vanden Berghe
Geert Trooskens
Tim De Meyer
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2014
Strategies for validation and testing of DNA methylation biomarkers
Geert Trooskens
Wim Van Criekinge
A1
Journal Article
in
EPIGENOMICS
2014
Systemic suppression of the shoot metabolism upon rice root nematode infection
Tina Kyndt
Simon Denil
Lander Bauters
Wim Van Criekinge
Tim De Meyer
A1
Journal Article
in
PLOS ONE
2014
2013
Alterations of immune response of non-small lung cancer with azacytidine
Alexander Koch
Wim Van Criekinge
Tim De Meyer
A1
Journal Article
in
ONCOTARGET
2013
An epigenomic next-generation sequencing approach to identify predictive markers for PARP inhibitor response in breast cancer cells
Tim De Meyer
Geert Trooskens
Wim Van Criekinge
C3
Conference
2013
An exploration of pathways involved in lung carcinoid progression using gene expression profiling
Wim Van Criekinge
A1
Journal Article
in
CARCINOGENESIS
2013
Association of DNA promoter hypermethylation of decoy receptor 1 (DCR1) with poor response to irinotecan in metastatic colorectal cancer
Wim Van Criekinge
Geert Trooskens
C3
Conference
2013
CD44 and OTP are strong prognostic markers for pulmonary carcinoids
Leander Van Neste
Wim Van Criekinge
A1
Journal Article
in
CLINICAL CANCER RESEARCH
2013
CD44 and OTP are strong prognostic markers for pulmonary carcinoids
Wim Van Criekinge
C3
Conference
2013
CHFR promoter methylation indicates poor prognosis in stage II microsatellite stable colorectal cancer
Wim Van Criekinge
C3
Conference
2013
Clinical utility of an epigenetic assay to detect occult prostate cancer in histopathologically negative biopsies: results of the MATLOC study
Leander Van Neste
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF UROLOGY
2013
Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs
Jeroen Crappé
Wim Van Criekinge
Geert Trooskens
Gerben Menschaert
A1
Journal Article
in
BMC GENOMICS
2013
Comprehensive analysis of the basal cell carcinoma functional methylome
Geert Trooskens
Wim Van Criekinge
C3
Conference
2013
Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events
Gerben Menschaert
Wim Van Criekinge
Alexander Koch
Jeroen Crappé
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2013
Expression of type 2 orexin receptor in human endometrium and its epigenetic silencing in endometrial cancer
Geert Trooskens
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM
2013
GLUCAN SYNTHASE-LIKE8 and STEROL METHYLTRANSFERASE2 are required for ploidy consistency of the sexual reproduction system in Arabidopsis
Nico De Storme
Joachim De Schrijver
Wim Van Criekinge
Danny Geelen
A1
Journal Article
in
PLANT CELL
2013
Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers
Anneleen Decock
Maté Ongenaert
Jasmien Hoebeeck
Katleen De Preter
Gert Van Peer
Wim Van Criekinge
Genevieve Laureys
Tom Van Maerken
Franki Speleman
Jo Vandesompele
C3
Conference
2013
Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers
Anneleen Decock
Maté Ongenaert
Jasmien Hoebeeck
Katleen De Preter
Gert Van Peer
Wim Van Criekinge
Genevieve Laureys
Joëlle Vermeulen
Tom Van Maerken
Franki Speleman
Jo Vandesompele
C3
Conference
2013
Identifying and validating DNA methylation biomarkers: the example of neuroblastoma
Anneleen Decock
Maté Ongenaert
Jasmien Hoebeeck
Katleen De Preter
Gert Van Peer
Wim Van Criekinge
Genevieve Laureys
Joëlle Vermeulen
Tom Van Maerken
Franki Speleman
Jo Vandesompele
C3
Conference
2013
Mass spectrometry and ribosome profiling, a perfect combination towards a more comprehensive identification strategy of true in vivo protein forms
Jeroen Crappé
Alexander Koch
Sandra Steyaert
Wim Van Criekinge
Petra Van Damme
Gerben Menschaert
C3
Conference
2013
Methylation-specific digital karyotyping of HPV16E6E7 expressing human keratinocytes identifies novel methylation events in cervical carcinogenesis
Maté Ongenaert
Geert Trooskens
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF PATHOLOGY
2013
Micropeptides, the next best thing after micro-RNA?: combining in silico prediction and ribosome profiling in a genome-wide search for novel micropeptides
Jeroen Crappé
Geert Trooskens
Wim Van Criekinge
Gerben Menschaert
C3
Conference
2013
Prediction of risk for prostate cancer in histopathologically negative biopsies by multigene epigenetic assay
Wim Van Criekinge
Olivier Thas
C3
Conference
2013
Quality evaluation of methyl binding domain based kits for enrichment DNA-methylation sequencing
Tim De Meyer
Evi Mampaey
Simon Denil
Geert Trooskens
Jean-Pierre Renard
Sarah De Keulenaer
Gerben Menschaert
Wim Van Criekinge
A1
Journal Article
in
PLOS ONE
2013
Staphylococcal enterotoxin B influences the DNA methylation pattern in nasal polyp tissue : a preliminary study
Claudina Perez Novo
Simon Denil
Geert Trooskens
Tim De Meyer
Wim Van Criekinge
Paul Van Cauwenberge
Claus Bachert
A1
Journal Article
in
ALLERGY ASTHMA AND CLINICAL IMMUNOLOGY
2013
The CpG island methylator phenotype: what's in a name?
Joachim De Schrijver
Tim De Meyer
Wim Van Criekinge
A1
Journal Article
in
CANCER RESEARCH
2013
The effect of VEGF-targeted therapy on biomarker expression in sequential tissue from patients with metastatic clear cell renal cancer
Christophe Van Neste
Tim De Meyer
Wim Van Criekinge
A1
Journal Article
in
CLINICAL CANCER RESEARCH
2013
Transcriptional analysis through RNA sequencing of giant cells induced by Meloidogyne graminicola in rice roots
Hongli Ji
Godelieve Gheysen
Simon Denil
Kamrun Nahar
Annelies Haegeman
Winnok De Vos
Geert Trooskens
Wim Van Criekinge
Tim De Meyer
Tina Kyndt
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2013
2012
A tissue biopsy-based epigenetic multiplex PCR assay for prostate cancer detection
Leander Van Neste
Wim Van Criekinge
A1
Journal Article
in
BMC UROLOGY
2012
An omnibus consistent adaptive percentile modified Wilcoxon rank sum test with applications in gene expression studies
Olivier Thas
Lieven Clement
Wim Van Criekinge
A1
Journal Article
in
BIOMETRICS
2012
Biomarkers for detection and prognosis of breast cancer identified by a functional hypermethylome screen
Leander Van Neste
Wim Van Criekinge
Alexander Koch
A1
Journal Article
in
EPIGENETICS
2012
Colorectal adenoma to carcinoma progression is accompanied by changes in gene expression associated with ageing, chromosomal instability, and fatty acid metabolism.
Wim Van Criekinge
A1
Journal Article
in
CELLULAR ONCOLOGY
2012
DNA methylation of phosphatase and actin regulator 3 detects colorectal cancer in stool and complements FIT
Wim Van Criekinge
A1
Journal Article
in
CANCER PREVENTION RESEARCH
2012
Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers.
Anneleen Decock
Maté Ongenaert
Jasmien Hoebeeck
Katleen De Preter
Gert Van Peer
Wim Van Criekinge
Genevieve Laureys
Joëlle Vermeulen
Tom Van Maerken
Franki Speleman
Jo Vandesompele
A1
Journal Article
in
GENOME BIOLOGY
2012
Genome‐wide RNA‐ and MBD‐sequencing in HCT116 and DKO cells as a global re‐expression model
Joachim De Schrijver
Geert Trooskens
Leander Van Neste
Wim Van Criekinge
C3
Conference
2012
Identification of new molecular species using second-generation sequencing
Joachim De Schrijver
Wim Van Criekinge
Sofie Bekaert
Dissertation
2012
Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model
Kristof De Beuf
Joachim De Schrijver
Olivier Thas
Wim Van Criekinge
Lieven Clement
A1
Journal Article
in
BMC BIOINFORMATICS
2012
Low dose irradiation of thyroid cells reveals a unique transcriptomic and epigenetic signature in RET/PTC-positive cells
Tim De Meyer
Sofie Bekaert
Wim Van Criekinge
Sarah Baatout
A1
Journal Article
in
MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS
2012
Micropeptides, the next best thing after micro-RNA?: combining in silico prediction and ribosome profiling in a genome-wide search for novel micropeptides
Jeroen Crappé
Geert Trooskens
Wim Van Criekinge
Gerben Menschaert
C3
Conference
2012
Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform
Sarah De Keulenaer
Jan Hellemans
Steve Lefever
Jean-Pierre Renard
Joachim De Schrijver
Hendrik Van de Voorde
Filip Van Nieuwerburgh
Daisy Flamez
Filip Pattyn
Bieke Scharlaken
Dieter Deforce
Sofie Bekaert
Wim Van Criekinge
Jo Vandesompele
Paul Coucke
A1
Journal Article
in
BMC MEDICAL GENOMICS
2012
Promoter methylation analysis identifies prognostic methylation biomarkers in neuroblastoma
Anneleen Decock
Maté Ongenaert
Jasmien Hoebeeck
Katleen De Preter
Gert Van Peer
Wim Van Criekinge
Genevieve Laureys
Joëlle Vermeulen
Tom Van Maerken
Franki Speleman
Jo Vandesompele
C3
Conference
2012
Spectral clustering in peptidomics studies allows homology searching and modification profiling: HomClus, a versatile tool
Gerben Menschaert
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2012
The epigenetic promise for prostate cancer diagnosis.
Leander Van Neste
Wim Van Criekinge
A1
Journal Article
in
PROSTATE
2012
Transcriptional reprogramming by root knot and migratory nematode infection in rice
Tina Kyndt
Simon Denil
Annelies Haegeman
Geert Trooskens
Lander Bauters
Wim Van Criekinge
Tim De Meyer
Godelieve Gheysen
A1
Journal Article
in
NEW PHYTOLOGIST
2012
Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing
Tina Kyndt
Simon Denil
Annelies Haegeman
Geert Trooskens
Tim De Meyer
Wim Van Criekinge
Godelieve Gheysen
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2012
2011
A non-parametric method to assess the presence of significant DNA-methylation in enrichment-based NGS data
Klaas Mensaert
Geert Trooskens
Wim Van Criekinge
Olivier Thas
Tim De Meyer
C3
Conference
2011
Accurate long read mapping using enhanced suffix arrays
Michaël Vyverman
Joachim De Schrijver
Wim Van Criekinge
Peter Dawyndt
Veerle Fack
P1
Conference
2011
Applying massive parallel sequencing to molecular diagnosis of Marfan and Loeys-Dietz syndromes
Machteld Baetens
Lut Van Laer
Kim De Leeneer
Jan Hellemans
Joachim De Schrijver
Hendrik Van de Voorde
Marjolijn Renard
Björn Menten
Wim Van Criekinge
Julie De Backer
Anne De Paepe
Bart Loeys
Paul Coucke
A1
Journal Article
in
HUMAN MUTATION
2011
Charting the methylome
Geert Trooskens
Tim De Meyer
Simon Denil
Wim Van Criekinge
C3
Conference
2011
Epigenetic, metabolic and signal transduction pathways involved in radiation response of normal and transformed thyrocytes
Khalil Abouelaradat
Wim Van Criekinge
Sarah Baatout
Tim De Meyer
Sofie Bekaert
Dissertation
2011
Genome sequence of Helicobacter suis supports its role in gastric pathology
Miet Vermoote
Tom Vandekerckhove
Bram Flahou
Frank Pasmans
Annemieke Smet
Dominic De Groote
Wim Van Criekinge
Richard Ducatelle
Freddy Haesebrouck
C3
Conference
2011
Genome sequence of Helicobacter suis supports its role in gastric pathology
Miet Vermoote
Tom Vandekerckhove
Bram Flahou
Frank Pasmans
Annemieke Smet
Dominic De Groote
Wim Van Criekinge
Richard Ducatelle
Freddy Haesebrouck
A1
Journal Article
in
VETERINARY RESEARCH
2011
Massive parallel amplicon sequencing of the breast cancer genes BRCA1 and BRCA2: opportunities, challenges, and limitations
Kim De Leeneer
Jan Hellemans
Joachim De Schrijver
Machteld Baetens
Bruce Poppe
Wim Van Criekinge
Anne De Paepe
Paul Coucke
Kathleen Claes
A1
Journal Article
in
HUMAN MUTATION
2011
Micro peptides as a new class of bio-active peptides in Eukaryotes
Jeroen Crappé
Gerben Menschaert
Geert Trooskens
Joachim De Schrijver
Wim Van Criekinge
C3
Conference
2011
MutaDATABASE: a centralized and standardized DNA variation database
Wim Van Criekinge
A1
Journal Article
in
NATURE BIOTECHNOLOGY
2011
PROKAR‐SEQ: an analysis and visualization framework for next‐generation sequencing based quantification of prokaryotic communities
Joachim De Schrijver
Pieter-Jan Volders
Frederiek-Maarten Kerckhof
Dagmar Obbels
Elie Verleyen
Wim Vyverman
Tim De Meyer
Wim Van Criekinge
C3
Conference
2011
Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics
Kim De Leeneer
Joachim De Schrijver
Lieven Clement
Machteld Baetens
Steve Lefever
Sarah De Keulenaer
Wim Van Criekinge
Dieter Deforce
Filip Van Nieuwerburgh
Sofie Bekaert
Filip Pattyn
Bram De Wilde
Paul Coucke
Jo Vandesompele
Kathleen Claes
Jan Hellemans
A1
Journal Article
in
PLOS ONE
2011
Response to low-dose X-irradiation is p53-dependent in a papillary thyroid carcinoma model system
Winnok De Vos
Tim De Meyer
Sofie Bekaert
Wim Van Criekinge
Sarah Baatout
A1
Journal Article
in
INTERNATIONAL JOURNAL OF ONCOLOGY
2011
Telomere length and cardiovascular aging: the means to the ends?
Tim De Meyer
Ernst Rietzschel
Marc De Buyzere
Wim Van Criekinge
Sofie Bekaert
A1
Journal Article
in
AGEING RESEARCH REVIEWS
2011
2010
A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome
Gerben Menschaert
Tom Vandekerckhove
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2010
Accurate long read mapping using enhanced suffix arrays
Michaël Vyverman
Joachim De Schrijver
Wim Van Criekinge
Peter Dawyndt
Veerle Fack
C3
Conference
2010
Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline
Joachim De Schrijver
Kim De Leeneer
Steve Lefever
Nick Sabbe
Filip Pattyn
Filip Van Nieuwerburgh
Paul Coucke
Dieter Deforce
Jo Vandesompele
Sofie Bekaert
Jan Hellemans
Wim Van Criekinge
A1
Journal Article
in
BMC BIOINFORMATICS
2010
Cancer-related epigenome changes associated with reprogramming to induced pluripotent stem cells
Leander Van Neste
Wim Van Criekinge
A1
Journal Article
in
CANCER RESEARCH
2010
Evaluation of standard and advanced preprocessing methods for the univariate analysis of blood serum 1H-NMR spectra
Tim De Meyer
Davy Sinnaeve
Björn Van Gasse
Ernst Rietzschel
Marc De Buyzere
Michel Langlois
Sofie Bekaert
José Martins
Wim Van Criekinge
A1
Journal Article
in
ANALYTICAL AND BIOANALYTICAL CHEMISTRY
2010
Exploring 3D pooled next-generation sequencing using SNP-Cub^3
Joachim De Schrijver
Bram De Wilde
Geert Trooskens
Jo Vandesompele
Wim Van Criekinge
C3
Conference
2010
GULP1, a potential tumor suppressor gene in ovarian tumors and its utility as a biomarker
Wim Van Criekinge
Maté Ongenaert
C3
Conference
2010
Genome sequence of Helicobacter suis supports its role in gastric pathology
Miet Vermoote
Tom Vandekerckhove
Bram Flahou
Frank Pasmans
Annemieke Smet
Dominic De Groote
Wim Van Criekinge
Richard Ducatelle
Freddy Haesebrouck
C3
Conference
2010
Identification and validation of the methylated TWIST1 and NID2 genes through real-time methylation-specific polymerase chain reaction assays for the noninvasive detection of primary bladder cancer in urine samples
Wim Van Criekinge
A2
Journal Article
in
EUROPEAN UROLOGY
2010
Peptidomics coming of age : a review of contributions from a bioinformatics angle
Gerben Menschaert
Tom Vandekerckhove
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2010
The N-myc downstream regulated gene (NDRG) family: diverse functions, multiple applications
Maté Ongenaert
Wim Van Criekinge
A1
Journal Article
in
FASEB JOURNAL
2010
2009
A plasma-based colorectal cancer (CRC) screening assay using DNA methylation markers: first results of multicenter studies
Wim Van Criekinge
C3
Conference
2009
Bioinformatics solutions for MS/MS interpretation tailored to the peptidomics field
Gerben Menschaert
Tom Vandekerckhove
Wim Van Criekinge
A4
Journal Article
in
COMMUNICATIONS IN AGRICULTURAL AND APPLIED BIOLOGICAL SCIENCES
2009
Cellular reprogramming
Maté Ongenaert
Wim Van Criekinge
Dissertation
2009
E2Fs mediate a fundamental cell-cycle deregulation in high-grade serous ovarian carcinomas
Tim De Meyer
Koen Van de Vijver
Sofie Bekaert
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF PATHOLOGY
2009
External X-irradiation causes a decrease in the proliferation of two papillary thyroid carcinoma cell lines with no significant increase in cell death
Sofie Bekaert
Tim De Meyer
Wim Van Criekinge
C3
Conference
2009
GATA4 and GATA5 are potential tumor suppressors and biomarkers in colorectal cancer
Wim Van Criekinge
A1
Journal Article
in
CLINICAL CANCER RESEARCH
2009
Pharmacologic unmasking of epigenetically silenced genes in breast cancer
Wim Van Criekinge
A1
Journal Article
in
CLINICAL CANCER RESEARCH
2009
Prognostic significance of Gremlin1 (GREM1) promoter CPG island hypermethylation in clear cell renal cell carcinoma
Leander Van Neste
Wim Van Criekinge
C3
Conference
2009
Promoter DNA methylation of Oncostatin M receptor-β as a novel diagnostic and therapeutic marker in colon cancer
Wim Van Criekinge
A1
Journal Article
in
PLOS ONE
2009
Promoter hypermethylation of Phactr3, a potential new biomarker for colorectal cancer detection
Wim Van Criekinge
C3
Conference
2009
Spectral clustering in peptidomics studies helps to unravel modification profile of biologically active peptides and enhances peptide identification rate
Gerben Menschaert
Tom Vandekerckhove
Wim Van Criekinge
A1
Journal Article
in
PROTEOMICS
2009
Systemic telomere length and preclinical atherosclerosis : the Asklepios study
Tim De Meyer
Ernst Rietzschel
Marc De Buyzere
Michel Langlois
Dirk De Bacquer
Patrick Segers
Gui De Backer
Patric Van Oostveldt
Wim Van Criekinge
Thierry Gillebert
Sofie Bekaert
A1
Journal Article
in
EUROPEAN HEART JOURNAL
2009
VIP and VIP Validator: a diagnostic amplicon sequencing Variant Interpretation Pipeline and variant detection validator
Joachim De Schrijver
Wim Van Criekinge
C3
Conference
2009
2008
Defining a chromatin pattern that characterizes DNA-hypermethylated genes in colon cancer cells
Leander Van Neste
Wim Van Criekinge
A1
Journal Article
in
CANCER RESEARCH
2008
Discovery of DNA methylation markers in cervical cancer using relaxation ranking
Maté Ongenaert
Wim Van Criekinge
A1
Journal Article
in
BMC MEDICAL GENOMICS
2008
GATA4 and GATA5 act as tumor suppressors and are potential biomarkers in colorectal cancer
Wim Van Criekinge
C3
Conference
2008
Genome-wide promoter analysis uncovers portions of the cancer methylome
Maté Ongenaert
Wim Van Criekinge
A1
Journal Article
in
CANCER RESEARCH
2008
Genrisk-T project: response of the TPC-1 papillary thyroid carcinoma cell line to a range of low to high doses of irradiation
Sofie Bekaert
Tim De Meyer
Wim Van Criekinge
A4
Journal Article
in
COMMUNICATIONS IN AGRICULTURAL AND APPLIED BIOLOGICAL SCIENCES
2008
Hypermethylation of MCAM gene is associated with advanced tumor stage in prostate cancer
Wim Van Criekinge
A1
Journal Article
in
PROSTATE
2008
Integration of DNA and expression microarray data unravels seven putative oncogenes on 20Q amplicon involved in colorectal adenoma to carcinoma progression
Wim Van Criekinge
Olivier Thas
C3
Conference
2008
Lower red blood cell counts in middle-aged subjects with shorter peripheral blood leukocyte telomere length
Tim De Meyer
Marc De Buyzere
Michel Langlois
Ernst Rietzschel
Dirk De Bacquer
Patric Van Oostveldt
Gui De Backer
Thierry Gillebert
Wim Van Criekinge
Sofie Bekaert
A1
Journal Article
in
AGING CELL
2008
Multiple putative oncogenes at the chromosome 20q amplicon contribute to colorectal adenoma to carcinoma progression
Wim Van Criekinge
Olivier Thas
A1
Journal Article
in
GUT
2008
NMR-based characterization of metabolic alterations in hypertension using an adaptive, intelligent binning algorithm
Tim De Meyer
Davy Sinnaeve
Björn Van Gasse
Ernst Rietzschel
Marc De Buyzere
Thierry Gillebert
Sofie Bekaert
José Martins
Wim Van Criekinge
A1
Journal Article
in
ANALYTICAL CHEMISTRY
2008
PubMeth: a cancer methylation database combining text-mining and expert annotation
Maté Ongenaert
Leander Van Neste
Tim De Meyer
Gerben Menschaert
Sofie Bekaert
Wim Van Criekinge
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2008
Pubmeth: reviewed methylation database in cancer based on text-mining
Maté Ongenaert
Leander Van Neste
Tim De Meyer
Gerben Menschaert
Sofie Bekaert
Wim Van Criekinge
C1
Conference
2008
Studying telomeres in a longitudinal population based study
Tim De Meyer
Ernst Rietzschel
Marc De Buyzere
Wim Van Criekinge
Sofie Bekaert
A1
Journal Article
in
Frontiers in Bioscience
2008
The biomarker potential of promoter hypermethylation in HNSCC treated by radiotherapy
Wim Van Criekinge
C3
Conference
2008
ssDNA-binding protein 2 is frequently hypermethylated and suppresses cell growth in human prostate cancer
Wim Van Criekinge
A1
Journal Article
in
CLINICAL CANCER RESEARCH
2008
2007
Comparing the DNA hypermethylome with gene mutations in human colorectal cancer
Leander Van Neste
Wim Van Criekinge
A1
Journal Article
in
PLOS GENETICS
2007
Discovery of methylation markers using a relaxation ranking algorithm
Maté Ongenaert
Wim Van Criekinge
C1
Conference
2007
Genome wide promoter methylation analysis in neuroblastoma with perspectives for integrated molecular profiling
Jasmien Hoebeeck
Maté Ongenaert
Evi Michels
Katleen De Preter
Joëlle Vermeulen
Nurten Yigit
Anne De Paepe
Wim Van Criekinge
Franki Speleman
Jo Vandesompele
C3
Conference
2007
Identification of epigenetically silenced genes in tumor endothelial cells
Wim Van Criekinge
A1
Journal Article
in
CANCER RESEARCH
2007
Paternal age at birth is an important determinant of offspring telomere length
Tim De Meyer
Ernst Rietzschel
Marc De Buyzere
Dirk De Bacquer
Wim Van Criekinge
Gui De Backer
Thierry Gillebert
Patric Van Oostveldt
Sofie Bekaert
A1
Journal Article
in
HUMAN MOLECULAR GENETICS
2007
Radiosensitization by histone deacetylase inhibitors +/- demethylating agents in head and neck cancer cell lines
Wim Van Criekinge
C3
Conference
2007
Telomere length and cardiovascular risk factors in a middle-aged population free of overt cardiovascular disease
Sofie Bekaert
Tim De Meyer
Ernst Rietzschel
Marc De Buyzere
Dirk De Bacquer
Michel Langlois
Patrick Segers
Wim Van Criekinge
Pascal Verdonck
Gui De Backer
Thierry Gillebert
Patric Van Oostveldt
A1
Journal Article
in
AGING CELL
2007
2006
Detection of putative secreted proteins in the plant-parasitic nematode Heterodera schachtii
Bartel Vanholme
Wim Van Criekinge
Godelieve Gheysen
A1
Journal Article
in
PARASITOLOGY RESEARCH
2006
Informatica in dienst van de biotechnologie
Wim Van Criekinge
A4
Journal Article
in
HET INGENIEURSBLAD
2006
Quantitation of promoter methylation of multiple genes in urine DNA and bladder cancer detection
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF THE NATIONAL CANCER INSTITUTE
2006
2005
CpG island characterisation
Maté Ongenaert
Wim Van Criekinge
C1
Conference
2005
Phylogenetic trees: visualizing, customizing and detecting incongruence
Geert Trooskens
Wim Van Criekinge
A1
Journal Article
in
BIOINFORMATICS
2005
Quantitative methylation-specific polymerase chain reaction gene patterns in urine sediment distinguish prostate cancer patients from control subjects
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF CLINICAL ONCOLOGY
2005
2004
A new class of ubiquitin extension proteins secreted by the dorsal pharyngeal gland in plant parasitic cyst nematodes
Tom Tytgat
Bartel Vanholme
Jan De Meutter
Myriam Claeys
Marjolein Couvreur
Isabelle Vanhoutte
Wim Van Criekinge
Gaetan Borgonie
August Coomans
Godelieve Gheysen
A1
Journal Article
in
MOLECULAR PLANT-MICROBE INTERACTIONS
2004
The yeast three-hybrid system as a tool to study caspases
Wim Van Criekinge
Karen Heyninck
Rudi Beyaert
Bookchapter
in
Apoptosis methods and protocols
2004
2001
Phagocytes: the professional and amateur disposal experts of apoptosis
Wim Van Criekinge
A4
Journal Article
in
ELSO GAZETTE
2001
2000
Bioinformatics: the goldrush
Wim Van Criekinge
A4
Journal Article
in
MEDEDELINGEN VAN DE FACULTEIT LANDBOUWKUNDIGE EN TOEGEPASTE BIOLOGISCHE WETENSCHAPPEN, UNIVERSITEIT GENT
2000
Identification and characterization of a dimerization domain in CED-6, an adapter protein involved in engulfment of apoptotic cells
Wim Van Criekinge
C3
Conference
2000
Identification and characterization of a dimerization domain in CED-6, an adapter protein involved in engulfment of apoptotic cells
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2000
1999
Alzheimer's disease associated presenilin 1 interacts with HC5 and ZETA, subunits of the catalytic 20S proteasome.
Wim Van Criekinge
Rudi Beyaert
A1
Journal Article
in
NEUROBIOLOGY OF DISEASE
1999
GAL4 is a substrate for caspases : implications for two-hybrid screening and other GAL4-based assays
Wim Van Criekinge
Sigrid Cornelis
Marc Van De Craen
Peter Vandenabeele
Walther Fiers
Rudi Beyaert
A2
Journal Article
in
MOLECULAR CELL BIOLOGY RESEARCH COMMUNICATIONS
1999
Identification of caspases that cleave presenilin-1 and presenilin-2 - Five presenilin-1 (PS1) mutations do not alter the sensitivity of PS1 to caspases.
Marc Van De Craen
Wim Declercq
Wim Van Criekinge
Walther Fiers
Peter Vandenabeele
A1
Journal Article
in
FEBS LETTERS
1999
The human homologue of Caenorhabditis elegans CED-6 specifically promotes phagocytosis of apoptotic cells
Wim Van Criekinge
A1
Journal Article
in
CURRENT BIOLOGY
1999
The zinc finger protein A20 inhibits TNF-induced NF-kappa B-dependent gene expression by interfering with an RIP- or TRAF2-mediated transactivation signal and directly binds to a novel NF-kappa B-inhibiting protein ABIN.
Karen Heyninck
Dirk De Valck
Wim Vanden Berghe
Wim Van Criekinge
Roland Contreras
Walther Fiers
Guy Haegeman
Rudi Beyaert
A1
Journal Article
in
JOURNAL OF CELL BIOLOGY
1999
Yeast two-hybrid : state of the art
Wim Van Criekinge
Rudi Beyaert
A1
Journal Article
in
BIOLOGICAL PROCEDURES ONLINE
1999
1998
Cathepsin B-mediated activation of the proinflammatory caspase-11
Peter Schotte
Wim Van Criekinge
Marc Van De Craen
Geert van Loo
Marjory Desmedt
Johan Grooten
Maria Cornelissen
Leo De Ridder
Joël Vandekerckhove
Walther Fiers
Peter Vandenabeele
Rudi Beyaert
A1
Journal Article
in
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
1998
Identification of a new caspase homologue: caspase-14.
Marc Van De Craen
Geert van Loo
Wim Van Criekinge
Walther Fiers
Wim Declercq
Peter Vandenabeele
A1
Journal Article
in
CELL DEATH AND DIFFERENTIATION
1998
Is er leven na de (cel)dood?
Wim Van Criekinge
Elke Smits
Christian Burvenich
Rudi Beyaert
A2
Journal Article
in
VLAAMS DIERGENEESKUNDIG TIJDSCHRIFT
1998
Karakterisering van caspasen in een '2 en 3-hybrid'-systeem
Wim Van Criekinge
Rudi Beyaert
Walther Fiers
Roland Contreras
Dissertation
1998
Use of the yeast three-hybrid system as a tool to study caspases.
Wim Van Criekinge
Marjan Van Gurp
Els Decoster
Peter Schotte
Marc Van De Craen
Walther Fiers
Peter Vandenabeele
Rudi Beyaert
A1
Journal Article
in
ANALYTICAL BIOCHEMISTRY
1998
1997
A20 inhibits NF-kappa B activation independently of binding to 14-3-3 proteins.
Karen Heyninck
Wim Van Criekinge
Peter Vandenabeele
Walther Fiers
Rudi Beyaert
A1
Journal Article
in
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
1997
Characterization of seven murine caspase family members
Peter Vandenabeele
Wim Declercq
Geert van Loo
Peter Schotte
Wim Van Criekinge
Rudi Beyaert
Walther Fiers
A1
Journal Article
in
FEBS LETTERS
1997
Presenilins and Alzheimer's disease: identification of proteins that interact with presenilin I using the yeast two-hybrid system
Wim Van Criekinge
Rudi Beyaert
A2
Journal Article
in
ARCHIVES OF PHYSIOLOGY AND BIOCHEMISTRY
1997
1996
A20, an inhibitor of cell death, self-associates by its zinc finger domain.
Karen Heyninck
Wim Van Criekinge
Roland Contreras
Rudi Beyaert
Walther Fiers
A1
Journal Article
in
FEBS LETTERS
1996
Functional characterization of the prodomain of interleukin-1 beta-converting enzyme.
Wim Van Criekinge
Rudi Beyaert
Peter Vandenabeele
Peter Schotte
Walther Fiers
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
1996
TNF-induced intracellular signaling leading to gene induction or to cytotoxicity by necrosis or by apoptosis.
Walther Fiers
Rudi Beyaert
Elke Boone
Sigrid Cornelis
Wim Declercq
Els Decoster
Geertrui Denecker
Bart Depuydt
Vera Goossens
Johan Grooten
Guy Haegeman
Karen Heyninck
Katia Vancompernolle
Wim Van Criekinge
Peter Vandenabeele
Veronique Vandevoorde
Dominique Vercammen
A1
Journal Article
in
JOURNAL OF INFLAMMATION
1996
1995
Intraliposomale precipitatie: de natuur als leermeester
Wim Van Criekinge
Paul Van der Meeren
A4
Journal Article
in
HET INGENIEURSBLAD
1995
On-line simulation as a methodology to recover size distributions from dynamic light scattering experiments.
Wim Van Criekinge
Jean Vanderdeelen
Leon Baert
A1
Journal Article
in
PARTICLE & PARTICLE SYSTEMS CHARACTERIZATION
1995
1994
Phospholipid-omposition of r-DNA hepatitis-B surface-antigens.
Wim Van Criekinge
Jean Vanderdeelen
Leon Baert
A1
Journal Article
in
INTERNATIONAL JOURNAL OF PHARMACEUTICS
1994
Physicochemical characterization of liposomes for use as a biomimeting precipitation reactor
Wim Van Criekinge
Paul Van der Meeren
A4
Journal Article
in
MEDEDELINGEN VAN DE FACULTEIT LANDBOUWKUNDIGE EN TOEGEPASTE BIOLOGISCHE WETENSCHAPPEN, UNIVERSITEIT GENT
1994