Research Explorer

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Researcher

Tom Michoel

Awards & Distinctions

18 Results

2022

Maximal acyclic subgraph optimization for gene regulatory networks

Kenneth StoopTom MichoelVanessa VermeirssenMario PickavetP. AudenaertDidier Colle

2019

High-dimensional Bayesian network inference from systems genetics data using genetic node ordering

Lingfei WangP. AudenaertTom Michoel

A1 Journal Article in FRONTIERS IN GENETICS

2014

The index-based subgraph matching algorithm with general symmetries (ISMAGS): exploiting symmetry for faster subgraph enumeration

Maarten HoubrakenSofie DemeyerTom MichoelP. AudenaertDidier ColleMario Pickavet

A1 Journal Article in PLOS ONE

2013

Predicting gene function from uncontrolled expression variation among individual wild-type Arabidopsis plants

Rahul BhosaleJeremy B JewellJens HollunderAbraham JK KooMarnik VuylstekeTom MichoelPierre HilsonAlain GoossensGregg A HoweJohn Browse et al.

A1 Journal Article in PLANT CELL

2011

CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks

P. AudenaertThomas Van ParysFlorian BrondelMario PickavetPiet DemeesterYves Van de PeerTom Michoel

A1 Journal Article in BIOINFORMATICS

2010

Characterizing regulatory path motifs in integrated networks using perturbational data

Anagha Madhusudan JoshiThomas Van ParysYves Van de PeerTom Michoel

A1 Journal Article in GENOME BIOLOGY

Implementing quantum gates using the ferromagnetic spin-J XXZ chain with kink boundary conditions

Tom MichoelJaideep MulherkarBruno Nachtergaele

A1 Journal Article in NEW JOURNAL OF PHYSICS

Module network inference from a cancer gene expression data set identifies microRNA regulated modules

Eric BonnetMarianthi TatariAnagha Madhusudan JoshiTom MichoelKathleen MarchalGeert BerxYves Van de Peer

A1 Journal Article in PLOS ONE

Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data

Eric BonnetTom MichoelYves Van de Peer

A1 Journal Article in BIOINFORMATICS

Towards system level modeling of functional modules and regulatory pathways using genome-scale data

Tom MichoelAnagha Madhusudan JoshiEric BonnetVanessa VermeirssenYves Van de Peer

2009

Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks

Tom MichoelRiet De SmetAnagha Madhusudan JoshiYves Van de PeerKathleen Marchal

A1 Journal Article in BMC Systems Biology

Module networks revisited: computational assessment and prioritization of model predictions

Anagha Madhusudan JoshiRiet De SmetKathleen MarchalYves Van de PeerTom Michoel

A1 Journal Article in BIOINFORMATICS

Reverse-engineering transcriptional modules from gene expression data

Tom MichoelRiet De SmetAnagha Madhusudan JoshiKathleen MarchalYves Van de Peer

A1 Journal Article in Annals of the New York Academy of Sciences

Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development

Vanessa VermeirssenAnagha Madhusudan JoshiTom MichoelEric BonnetTine CasneufYves Van de Peer

A1 Journal Article in MOLECULAR BIOSYSTEMS

2008

Analysis of a Gibbs sampler method for model-based clustering of gene expression data

Anagha Madhusudan JoshiYves Van de PeerTom Michoel

A1 Journal Article in BIOINFORMATICS

Transport of interface states in the Heisenberg chain

Tom MichoelBruno NachtergaeleWolfgang Spitzer

A1 Journal Article in JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL

2007

Validating module network learning algorithms using simulated data

Tom MichoelSteven MaereEric BonnetAnagha Madhusudan JoshiYvan SaeysTim Van den BulckeKoenraad Van LeemputPiet Van RemortelMartin KuiperKathleen Marchal et al.

A1 Journal Article in BMC BIOINFORMATICS

2006

Helicoidal transfer matrix model for inhomogeneous DNA melting

Tom MichoelYves Van de Peer

A1 Journal Article in PHYSICAL REVIEW E