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Researcher
Thomas Eekhout
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1 to 5
of 5
Profile
Projects
Publications
Activities
Awards & Distinctions
29
Results
2024
Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
Carolin Grones
Thomas Eekhout
Dongbo Shi
Manuel Neumann
Lea S. Berg
Yuji Ke
Rachel Shahan
Kevin L. Cox Jr
Fabio Gomez-Cano
Hilde Nelissen
et al.
Editorial material
2024
Neoantigen-targeted dendritic cell vaccination in lung cancer patients induces long-lived T cells exhibiting the full differentiation spectrum
Joline Ingels
Laurenz De Cock
Dieter Stevens
Rupert Mayer
Fabien Henri Thery
Guillem Sanchez Sanchez
David Vermijlen
Karin Weening
Saskia De Smet
Nele Lootens
et al.
A1
Journal Article
in
CELL REPORTS MEDICINE
2024
Scywalker : scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing
Peter De Rijk
Tijs Watzeels
Fahri Küçükali
Jasper Van Dongen
Júlia Faura
Patrick Willems
Lara De Deyn
Lena Duchateau
Carolin Grones
Thomas Eekhout
et al.
A1
Journal Article
in
BIOINFORMATICS
2024
The stem cell niche transcription factor ETHYLENE RESPONSE FACTOR 115 participates in aluminum‐induced terminal differentiation in Arabidopsis roots
Paul B. Larsen
Shiyang He
Taylor J. Meyer
Miriam Szurman‐Zubrzycka
Carolin Alfs
Jolanta Kwasniewska
Alexandra Pervis
Monika Gajecka
Aishwarya Veerabahu
Taylor R. Beaulieu
et al.
A1
Journal Article
in
PLANT CELL AND ENVIRONMENT
2024
2023
Cell type-specific attenuation of brassinosteroid signaling precedes stomatal asymmetric cell division
Kim Eunji
Cheng Zhang
Boyu Guo
Thomas Eekhout
Anaxi Houbaert
Jos Wendrich
Niels Vandamme
Manish Tiwari
Claire Simon--Vezo
Isabelle Vanhoutte
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2023
Distinctive and complementary roles of E2F transcription factors during plant replication stress responses
Maherun Nisa
Thomas Eekhout
Clara Bergis
José Antonio Pedroza-Garcia
Xiaoning He
Christelle Mazubert
Ilse Vercauteren
Toon Cools
Rim Brik-Chaouche
Jeannine Drouin-Wahbi
et al.
A1
Journal Article
in
MOLECULAR PLANT
2023
PAT1-type GRAS-domain proteins control regeneration by activating DOF3.4 to drive cell proliferation in Arabidopsis roots
Anchal Bisht
Thomas Eekhout
Balkan Canher
Ran Lu
Ilse Vercauteren
Geert De Jaeger
Jefri Heyman
Lieven De Veylder
A1
Journal Article
in
PLANT CELL
2023
Plant lineage-specific PIKMIN1 drives APC/CCCS52A2 E3-ligase activity-dependent cell division
Alex Willems
Yuanke Liang
Jefri Heyman
Thomas Depuydt
Thomas Eekhout
Balkan Canher
Hilde Van Den Daele
Ilse Vercauteren
Klaas Vandepoele
Lieven De Veylder
A1
Journal Article
in
PLANT PHYSIOLOGY
2023
Single cell RNA-sequencing in Arabidopsis root tissues
Yuji Ke
Max Minne
Thomas Eekhout
Bert De Rybel
Bookchapter
in
Plant gene regulatory networks : methods and protocols
2023
2022
Cell type-specific attenuation of brassinosteroid signalling drives stomatal asymmetric cell division
Kim Eunji
Cheng Zhang
Boyu Guo
Thomas Eekhout
Anaxi Houbaert
Jos Wendrich
Niels Vandamme
Manish Tiwari
Claire Simon--Vezo
Isabelle Vanhoutte
et al.
Preprint
2022
2021
A mutation in DNA polymerase α rescues WEE1KO sensitivity to HU
Thomas Eekhout
José Antonio Pedroza-Garcia
Pooneh Kalhorzadeh
Geert De Jaeger
Lieven De Veylder
A1
Journal Article
in
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
2021
A single-cell morpho-transcriptomic map of brassinosteroid action in the Arabidopsis root
Moritz Graeff
Surbhi Rana
Jos Wendrich
Julien Dorier
Thomas Eekhout
Ana Cecilia Aliaga Fandino
Nicolas Guex
George Bassel
Bert De Rybel
Christian Hardtke
A1
Journal Article
in
MOLECULAR PLANT
2021
Advances and opportunities in single-cell transcriptomics for plant research
Carolin Seyfferth
Jim Renema
Jos Wendrich
Thomas Eekhout
Ruth Seurinck
Niels Vandamme
Bernhard Blob
Yvan Saeys
Yrjo Helariutta
Kenneth D. Birnbaum
et al.
A1
Journal Article
in
ANNUAL REVIEW OF PLANT BIOLOGY
2021
Arabidopsis casein kinase 2 triggers stem cell exhaustion under Al toxicity and phosphate deficiency through activating the DNA damage response pathway
Pengliang Wei
Manon Demulder
Pascale David
Thomas Eekhout
Kaoru Okamoto Yoshiyama
Long Nguyen
Ilse Vercauteren
Dominique Eeckhout
Margot Galle
Geert De Jaeger
et al.
A1
Journal Article
in
PLANT CELL
2021
G2/M-checkpoint activation in fasciata1 rescues an aberrant S-phase checkpoint but causes genome instability
Thomas Eekhout
Martina Dvorackova
José Antonio Pedroza Garcia
Martina Nespor Dadejova
Pooneh Kalhorzadeh
Hilde Van Den Daele
Ilse Vercauteren
Jiri Fajkus
Lieven De Veylder
A1
Journal Article
in
PLANT PHYSIOLOGY
2021
Maize ATR safeguards genome stability during kernel development to prevent early endosperm endocycle onset and cell death
José Antonio Pedroza-Garcia
Thomas Eekhout
Ignacio Achón
Maher-Un Nisa
Griet Coussens
Ilse Vercauteren
Hilde Van Den Daele
Laurens Pauwels
Maria Van Lijsebettens
Cécile Raynaud
et al.
A1
Journal Article
in
PLANT CELL
2021
Non-cell autonomous and spatiotemporal signaling from a tissue organizer orchestrates root vascular development
Baojun Yang
Max Minne
Federica Brunoni
Lenka Plačková
Ivan Petřík
Yanbiao Sun
Jonah Nolf
Wouter Smet
Kevin Verstaen
Jos Wendrich
et al.
A1
Journal Article
in
NATURE PLANTS
2021
Rocks in the auxin stream : wound-induced auxin accumulation and ERF115 expression synergistically drive stem cell regeneration (vol 117, pg 16667, 2010)
Balkan Canher
Jefri Heyman
Maria Savina
Ajay Devendran
Thomas Eekhout
Ilse Vercauteren
Els Prinsen
Rotem Matosevich
Jian Xu
Vicotia Mironova
et al.
Correction
2021
2020
Rocks in the auxin stream : wound-induced auxin accumulation and ERF115 expression synergistically drive stem cell regeneration
Balkan Canher
Jefri Heyman
Maria Savina
Ajay Devendran
Thomas Eekhout
Ilse Vercauteren
Els Prinsen
Rotem Matosevich
Jian Xu
Victoria Mironova
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2020
Suppressor of gamma response 1 modulates the DNA damage response and oxidative stress response in leaves of cadmium-exposed Arabidopsis thaliana
Sophie Hendrix
Verena Iven
Thomas Eekhout
Michiel Huybrechts
Ingeborg Pecqueur
Nele Horemans
Els Keunen
Lieven De Veylder
Jaco Vangronsveld
Ann Cuypers
A1
Journal Article
in
FRONTIERS IN PLANT SCIENCE
2020
The cyclin CYCA3;4 is a postprophase target of the APC/CCCS52A2 E3-ligase controlling formative cell divisions in Arabidopsis
Alex Willems
Jefri Heyman
Thomas Eekhout
Ignacio Achón
José Antonio Pedroza-Garcia
Tingting Zhu
Lei Li
Ilse Vercauteren
Hilde Van Den Daele
Brigitte Van De Cotte
et al.
A1
Journal Article
in
PLANT CELL
2020
The plant WEE1 kinase is involved in checkpoint control activation in nematode-induced galls
Danila Cabral
Mohamed Youssef Banora
José Dijair Antonino
Natalia Rodiuc
Paulo Vieira
Roberta R Coelho
Christian Chevalier
Thomas Eekhout
Gilbert Engler
Lieven De Veylder
et al.
A1
Journal Article
in
NEW PHYTOLOGIST
2020
2019
Plant stress : hitting pause on the cell cycle
Thomas Eekhout
Lieven De Veylder
Editorial material
2019
2018
A spatiotemporal DNA endoploidy map of the Arabidopsis root reveals roles for the endocycle in root development and stress adaptation
Rahul Bhosale
Véronique Boudolf
Fabiola Cuevas Bustamante
Ran Lu
Thomas Eekhout
Zhubing Hu
Gert Van Isterdael
Georgina M Lambert
Fan Xu
Moritz Nowack
et al.
A1
Journal Article
in
PLANT CELL
2018
DNA damage checkpoint regulation in Arabidopsis and maize
Thomas Eekhout
Lieven De Veylder
Dissertation
2018
2017
Modification of DNA checkpoints to confer aluminum tolerance
Thomas Eekhout
Paul Larsen
Lieven De Veylder
Editorial material
2017
Tissue-specific control of the endocycle by the anaphase promoting complex/cyclosome inhibitors UVI4 and DEL1
Jefri Heyman
Stefanie Polyn
Thomas Eekhout
Lieven De Veylder
A1
Journal Article
in
PLANT PHYSIOLOGY
2017
2015
Lack of RNase H2 activity rescues HU-sensitivity of WEE1 deficient plants
Thomas Eekhout
Pooneh Kalhorzadeh
Lieven De Veylder
A1
Journal Article
in
PLANT SIGNALING & BEHAVIOR
2015
2014
The Arabidopsis SIAMESE-RELATED cyclin-dependent kinase inhibitors SMR5 and SMR7 regulate the DNA damage checkpoint in response to reactive oxygen species
Dalong Yi
Claire Lessa Alvim Kamei
Toon Cools
Sandy Vanderauwera
Naoki Takahashi
Yoko Okushima
Thomas Eekhout
Kaoru Okamoto Yoshiyama
John Larkin
Hilde Van Den Daele
et al.
A1
Journal Article
in
PLANT CELL
2014