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Researcher
Thomas Abeel
Profile
Projects
Publications
Activities
Awards & Distinctions
21
Results
2023
Pan-genome de Bruijn graph using the bidirectional FM-index
Lore Depuydt
Luca Renders
Thomas Abeel
Jan Fostier
A1
Journal Article
in
BMC BIOINFORMATICS
2023
2014
A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification
Aurine Verkest
Thomas Abeel
Ken Heyndrickx
Jelle Van Leene
Christa Lanz
Eveline Van De Slijke
Nancy De Winne
Dominique Eeckhout
Geert Persiau
Frank Van Breusegem
et al.
A1
Journal Article
in
PLANT PHYSIOLOGY
2014
ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development
Liesbeth Vercruyssen
Aurine Verkest
Nathalie Gonzalez Sanchez
Ken Heyndrickx
Dominique Eeckhout
Soon-Ki Han
Teddy Jégu
Rafal Archacki
Jelle Van Leene
Megan Andriankaja
et al.
A1
Journal Article
in
PLANT CELL
2014
2012
GenomeView : a next-generation genome browser
Thomas Abeel
Thomas Van Parys
Yvan Saeys
James Galagan
Yves Van de Peer
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2012
ORCAE: online resource for community annotation of eukaryotes
Lieven Sterck
Kenny Billiau
Thomas Abeel
Pierre Rouzé
Yves Van de Peer
A1
Journal Article
in
NATURE METHODS
2012
Semantically linking molecular entities in literature through entity relationships
Sofie Van Landeghem
Jari Björne
Thomas Abeel
Bernard De Baets
Tapio Salakoski
Yves Van de Peer
A1
Journal Article
in
BMC BIOINFORMATICS
2012
2010
Discriminative and informative features for biomolecular text mining with ensemble feature selection
Sofie Van Landeghem
Thomas Abeel
Yvan Saeys
Yves Van de Peer
A1
Journal Article
in
BIOINFORMATICS
2010
Highlights of the BioTM 2010 workshop on advances in bio text mining
Thomas Abeel
Sofie Van Landeghem
Roser Morante
Vincent Van Asch
Yves Van de Peer
Walter Daelemans
Yvan Saeys
Editorial material
2010
In-silico prediction methods for genome annotation : promoter prediction, biomarker discovery and next-generation sequencing analysis
Thomas Abeel
Yves Van de Peer
Yvan Saeys
Dissertation
2010
Integrating automated literature searches and text mining in biomarker discovery
Maté Ongenaert
Luc Dehaspe
C3
Conference
2010
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods
Thomas Abeel
Thibault Helleputte
Yves Van de Peer
Pierre Dupont
Yvan Saeys
A1
Journal Article
in
BIOINFORMATICS
2010
2009
Highlights from the 5(th) International Society for Computational Biology Student Council Symposium at the 17(th) Annual International Conference on Intelligent Systems for Molecular Biology and the 8(th) European Conference on Computational Biology: introduction
Thomas Abeel
Jeroen de Ridder
Lucia Peixoto
Editorial material
2009
Java-ML: a machine learning library
Thomas Abeel
Yves Van de Peer
Yvan Saeys
A1
Journal Article
in
JOURNAL OF MACHINE LEARNING RESEARCH
2009
Toward a gold standard for promoter prediction evaluation
Thomas Abeel
Yves Van de Peer
Yvan Saeys
A1
Journal Article
in
BIOINFORMATICS
2009
2008
Generic eukaryotic core promoter prediction using structural features of DNA
Thomas Abeel
Yvan Saeys
Eric Bonnet
Pierre Rouzé
Yves Van de Peer
A1
Journal Article
in
GENOME RESEARCH
2008
ProSOM: core promoter identification in the human genome
Thomas Abeel
Yvan Saeys
Yves Van de Peer
C1
Conference
2008
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles
Thomas Abeel
Yvan Saeys
Pierre Rouzé
Yves Van de Peer
A1
Journal Article
in
BIOINFORMATICS
2008
Robust feature selection using ensemble feature selection techniques
Yvan Saeys
Thomas Abeel
Yves Van de Peer
P1
Conference
2008
Towards robust feature selection techniques
Yvan Saeys
Thomas Abeel
Yves Van de Peer
C1
Conference
2008
2007
Translation initiation site prediction on a genomic scale : beauty in simplicity
Yvan Saeys
Thomas Abeel
Sven Degroeve
Yves Van de Peer
A1
Journal Article
in
BIOINFORMATICS
2007
2006
Improved core promoter prediction using ensembles of Support Vector Machines
Thomas Abeel
Yvan Saeys
Yves Van de Peer
C1
Conference
2006