Research Explorer

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Researcher

Thomas Abeel

Awards & Distinctions

21 Results

2023

Pan-genome de Bruijn graph using the bidirectional FM-index

Lore DepuydtLuca RendersThomas AbeelJan Fostier

A1 Journal Article in BMC BIOINFORMATICS

2014

A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification

Aurine VerkestThomas AbeelKen HeyndrickxJelle Van LeeneChrista LanzEveline Van De SlijkeNancy De WinneDominique EeckhoutGeert PersiauFrank Van Breusegem et al.

A1 Journal Article in PLANT PHYSIOLOGY

ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development

Liesbeth VercruyssenAurine VerkestNathalie Gonzalez SanchezKen HeyndrickxDominique EeckhoutSoon-Ki HanTeddy JéguRafal ArchackiJelle Van LeeneMegan Andriankaja et al.

A1 Journal Article in PLANT CELL

2012

GenomeView : a next-generation genome browser

Thomas AbeelThomas Van ParysYvan SaeysJames GalaganYves Van de Peer

A1 Journal Article in NUCLEIC ACIDS RESEARCH

ORCAE: online resource for community annotation of eukaryotes

Lieven SterckKenny BilliauThomas AbeelPierre RouzéYves Van de Peer

A1 Journal Article in NATURE METHODS

Semantically linking molecular entities in literature through entity relationships

Sofie Van LandeghemJari BjörneThomas AbeelBernard De BaetsTapio SalakoskiYves Van de Peer

A1 Journal Article in BMC BIOINFORMATICS

2010

Discriminative and informative features for biomolecular text mining with ensemble feature selection

Sofie Van LandeghemThomas AbeelYvan SaeysYves Van de Peer

A1 Journal Article in BIOINFORMATICS

Highlights of the BioTM 2010 workshop on advances in bio text mining

Thomas AbeelSofie Van LandeghemRoser MoranteVincent Van AschYves Van de PeerWalter DaelemansYvan Saeys

Editorial material

In-silico prediction methods for genome annotation : promoter prediction, biomarker discovery and next-generation sequencing analysis

Thomas AbeelYves Van de PeerYvan Saeys

Integrating automated literature searches and text mining in biomarker discovery

Maté OngenaertLuc Dehaspe

Robust biomarker identification for cancer diagnosis with ensemble feature selection methods

Thomas AbeelThibault HelleputteYves Van de PeerPierre DupontYvan Saeys

A1 Journal Article in BIOINFORMATICS

2009

Highlights from the 5(th) International Society for Computational Biology Student Council Symposium at the 17(th) Annual International Conference on Intelligent Systems for Molecular Biology and the 8(th) European Conference on Computational Biology: introduction

Thomas AbeelJeroen de RidderLucia Peixoto

Editorial material

Java-ML: a machine learning library

Thomas AbeelYves Van de PeerYvan Saeys

A1 Journal Article in JOURNAL OF MACHINE LEARNING RESEARCH

Toward a gold standard for promoter prediction evaluation

Thomas AbeelYves Van de PeerYvan Saeys

A1 Journal Article in BIOINFORMATICS

2008

Generic eukaryotic core promoter prediction using structural features of DNA

Thomas AbeelYvan SaeysEric BonnetPierre RouzéYves Van de Peer

A1 Journal Article in GENOME RESEARCH

ProSOM: core promoter identification in the human genome

Thomas AbeelYvan SaeysYves Van de Peer

ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles

Thomas AbeelYvan SaeysPierre RouzéYves Van de Peer

A1 Journal Article in BIOINFORMATICS

Robust feature selection using ensemble feature selection techniques

Yvan SaeysThomas AbeelYves Van de Peer

Towards robust feature selection techniques

Yvan SaeysThomas AbeelYves Van de Peer

2007

Translation initiation site prediction on a genomic scale : beauty in simplicity

Yvan SaeysThomas AbeelSven DegroeveYves Van de Peer

A1 Journal Article in BIOINFORMATICS

2006

Improved core promoter prediction using ensembles of Support Vector Machines

Thomas AbeelYvan SaeysYves Van de Peer