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Researcher
Steven Maere
Profile
Projects
Publications
Activities
Awards & Distinctions
66
Results
2024
Analysis of maize growth under drought in an automated plant phenotyping platform
Lennart Verbraeken
Hilde Nelissen
Dirk Inzé
Steven Maere
Dissertation
2024
Citizen science boosts fundamental and applied research for sustainable soybean cultivation in North‐Western Europe
Lena Vlaminck
Birgit Vanden Berghen
Stien Mertens
Jurgen Wuyts
Liesbeth Aerts
Judith Van Dingenen
Sofie Bekaert
Steven Maere
Liesbet Vranken
Sofie Goormachtigh
A1
Journal Article
in
PLANTS, PEOPLE, PLANET
2024
Out-of-sample R2 : estimation and inference
Stijn Hawinkel
Willem Waegeman
Steven Maere
A1
Journal Article
in
AMERICAN STATISTICIAN
2024
2023
Interspecies co‐expression analysis of lateral root development using inducible systems in rice, Medicago, and Arabidopsis
Hans Motte
Boris Parizot
Wei Xuan
Qian Chen
Steven Maere
Sandra Bensmihen
Tom Beeckman
A1
Journal Article
in
PLANT JOURNAL
2023
Monitoring of drought stress and transpiration rate using proximal thermal and hyperspectral imaging in an indoor automated plant phenotyping platform
Stien Mertens
Lennart Verbraeken
Heike Sprenger
Sam De Meyer
Kirin Demuynck
Bernard Cannoot
Julie Merchie
Jolien De Block
Jonathan T. Vogel
Wesley Bruce
et al.
A1
Journal Article
in
PLANT METHODS
2023
Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression
Sam De Meyer
Daniel Felipe Cruz Galvis
Tom De Swaef
Peter Lootens
Jolien De Block
Kevin Bird
Heike Sprenger
Michael Van de Voorde
Stijn Hawinkel
Tom Van Hautegem
et al.
A1
Journal Article
in
PLOS COMPUTATIONAL BIOLOGY
2023
SMAP design : a multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation
Ward Develtere
Evelien Waegneer
Kevin Debray
Jonas De Saeger
Sabine Van Glabeke
Steven Maere
Tom Ruttink
Tom Jacobs
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2023
2022
Ksrates : positioning whole-genome duplications relative to speciation events in KS distributions
Cecilia Sensalari
Steven Maere
Rolf Lohaus
A1
Journal Article
in
BIOINFORMATICS
2022
SMAP design : a multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation
Ward Develtere
Evelien Waegneer
Kevin Debray
Sabine Van Glabeke
Steven Maere
Tom Ruttink
Tom Jacobs
Preprint
2022
Spatial regression models for field trials : a comparative study and new ideas
Stijn Hawinkel
Sam De Meyer
Steven Maere
A1
Journal Article
in
FRONTIERS IN PLANT SCIENCE
2022
2021
Drought affects the rate and duration of organ growth but not inter-organ growth coordination
Lennart Verbraeken
Nathalie Wuyts
Stien Mertens
Bernard Cannoot
Katrien Maleux
Kirin Demuynck
Jolien De Block
Julie Merchie
Stijn Dhondt
Gustavo Bonaventure
et al.
A1
Journal Article
in
PLANT PHYSIOLOGY
2021
Proximal hyperspectral imaging detects diurnal and drought-induced changes in maize physiology
Stien Mertens
Lennart Verbraeken
Heike Sprenger
Kirin Demuynck
Katrien Maleux
Bernard Cannoot
Jolien De Block
Steven Maere
Hilde Nelissen
Gustavo Bonaventure
et al.
A1
Journal Article
in
FRONTIERS IN PLANT SCIENCE
2021
2020
Current status of the multinational Arabidopsis community
Geraint Parry
Nicholas J. Provart
Siobhan M. Brady
Baris Uzilday
Geert De Jaeger
Steven Maere
MULTINATIONAL ARABIDOPSIS STEERING COMMITTEE
A1
Journal Article
in
PLANT DIRECT
2020
Using single‐plant‐omics in the field to link maize genes to functions and phenotypes
Daniel Felipe Cruz Galvis
Sam De Meyer
Joke Ampe
Heike Sprenger
Dorota Herman
Tom Van Hautegem
Jolien De Block
Dirk Inzé
Hilde Nelissen
Steven Maere
A1
Journal Article
in
MOLECULAR SYSTEMS BIOLOGY
2020
Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions
Jos Wendrich
Baojun Yang
Niels Vandamme
Kevin Verstaen
Wouter Smet
Celien Van de Velde
Max Minne
Brecht Wybouw
Eliana Mor
Helena Arents
et al.
A1
Journal Article
in
SCIENCE
2020
2019
Endoreplication as a potential driver of cell wall modifications
Rahul Bhosale
Steven Maere
Lieven De Veylder
A1
Journal Article
in
CURRENT OPINION IN PLANT BIOLOGY
2019
Interspecific hybridization facilitates niche adaptation in beer yeast
Brigida Gallone
Jan Steensels
Stijn Mertens
Maria C Dzialo
Jonathan L Gordon
Ruben Wauters
Florian A Theßeling
Francesca Bellinazzo
Veerle Saels
Beatriz Herrera-Malaver
et al.
A1
Journal Article
in
NATURE ECOLOGY & EVOLUTION
2019
The impact of genome duplications on the dynamics of gene family evolution in plants
Setareh Tasdighian
Steven Maere
Yves Van de Peer
Dissertation
2019
2018
A spatiotemporal DNA endoploidy map of the Arabidopsis root reveals roles for the endocycle in root development and stress adaptation
Rahul Bhosale
Véronique Boudolf
Fabiola Cuevas Bustamante
Ran Lu
Thomas Eekhout
Zhubing Hu
Gert Van Isterdael
Georgina M Lambert
Fan Xu
Moritz Nowack
et al.
A1
Journal Article
in
PLANT CELL
2018
Comparative genomics of industrial yeasts
Brigida Gallone
Steven Maere
Kevin J Verstrepen
Dissertation
2018
Fern genomes elucidate land plant evolution and cyanobacterial symbioses
Fay-Wei Li
Paul Brouwer
Lorenzo Carretero-Paulet
Shifeng Cheng
Jan de Vries
Pierre-Marc Delaux
Ariana Eily
Nils Koppers
Li-Yaung Kuo
Zheng Li
et al.
A1
Journal Article
in
NATURE PLANTS
2018
Origins, evolution, domestication and diversity of Saccharomyces beer yeasts
Brigida Gallone
Stijn Mertens
Jonathan L Gordon
Steven Maere
Kevin J Verstrepen
Jan Steensels
A1
Journal Article
in
CURRENT OPINION IN BIOTECHNOLOGY
2018
The Apicomplexa-specific glucosamine-6-phosphate N-acetyltransferase gene family encodes a key enzyme for glycoconjugate synthesis with potential as therapeutic target
Marta Cova
Borja López-Gutiérrez
Sara Artigas-Jerónimo
Aida González-Díaz
Giulia Bandini
Steven Maere
Lorenzo Carretero-Paulet
Luis Izquierdo
A1
Journal Article
in
SCIENTIFIC REPORTS
2018
The reduction in maize leaf growth under mild drought affects the transition between cell division and cell expansion and cannot be restored by elevated gibberellic acid levels
Hilde Nelissen
Xiaohuan Sun
Bart Rymen
Yusuke Jikumaru
Mikko Kojima
Yumiko Takebayashi
Rafael Abbeloos
Kirin Demuynck
Veronique Storme
Marnik Vuylsteke
et al.
A1
Journal Article
in
PLANT BIOTECHNOLOGY JOURNAL
2018
2017
Evolutionary context improves regulatory network predictions
Jonathan L Gordon
Brigida Gallone
Steven Maere
Kevin J Verstrepen
Editorial material
2017
Reciprocally retained genes in the angiosperm lineage show the hallmarks of dosage balance sensitivity
Setareh Tasdighian
Michiel Van Bel
Zhen Li
Yves Van de Peer
Lorenzo Carretero-Paulet
Steven Maere
A1
Journal Article
in
PLANT CELL
2017
The origin of floral organ identity quartets
Philip Ruelens
Zhicheng Zhang
Hilda van Mourik
Steven Maere
Kerstin Kaufmann
Koen Geuten
A1
Journal Article
in
PLANT CELL
2017
2016
Combined large-scale phenotyping and transcriptomics in maize reveals a robust growth regulatory network
Joke Baute
Dorota Herman
Frederik Coppens
Jolien De Block
Bram Slabbinck
Matteo Dell'Acqua
Mario Enrico Pe
Steven Maere
Hilde Nelissen
Dirk Inzé
A1
Journal Article
in
PLANT PHYSIOLOGY
2016
Domestication and divergence of Saccharomyces cerevisiae beer yeasts
Brigida Gallone
Jan Steensels
Troels Prahl
Leah Soriaga
Veerle Saels
Beatriz Herrera-Malaver
Adriaan Merlevede
Miguel Roncoroni
Karin Voordeckers
Loren Miraglia
et al.
A1
Journal Article
in
CELL
2016
Gene duplicability of core genes is highly consistent across all angiosperms
Zhen Li
Jonas Defoort
Setareh Tasdighian
Steven Maere
Yves Van de Peer
Riet De Smet
A1
Journal Article
in
PLANT CELL
2016
Leaf growth response to mild drought : natural variation in Arabidopsis sheds light on trait architecture
Pieter Clauw
Frederik Coppens
Arthur Korte
Dorota Herman
Bram Slabbinck
Stijn Dhondt
Twiggy Van Daele
Liesbeth De Milde
Mattias Vermeersch
Katrien Maleux
et al.
A1
Journal Article
in
PLANT CELL
2016
2015
A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development
Qian Chen
Yang Liu
Steven Maere
Eunkyoung Lee
Gert Van Isterdael
Zidian Xie
Wei Xuan
Jessica Lucas
Valya Vassileva
Saeko Kitakura
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2015
A conserved core of programmed cell death indicator genes discriminates developmentally and environmentally induced programmed cell death in plants
Yadira Olvera Carrillo
Michiel Van Bel
Tom Van Hautegem
Matyas Fendrych
Marlies Huysmans
Mária Braun Šimášková
Matthias Van Durme
Pierre Buscaill
Susana Rivas
Nuria S Coll
et al.
A1
Journal Article
in
PLANT PHYSIOLOGY
2015
Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population
Joke Baute
Dorota Herman
Frederik Coppens
Jolien De Block
Bram Slabbinck
Matteo Dell'Acqua
Mario Enrico Pè
Steven Maere
Hilde Nelissen
Dirk Inzé
A1
Journal Article
in
GENOME BIOLOGY
2015
2014
Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary
Kevin Vanneste
Guy Baele
Steven Maere
Yves Van de Peer
A1
Journal Article
in
GENOME RESEARCH
2014
Deciphering the evolutionary impact of gen(om)e duplications through mechanistic modeling of the genotype-phenotype map
Jayson Arley Gutiérrez Betancur
Steven Maere
Dissertation
2014
Interview with Steven Maere
Steven Maere
Editorial material
2014
Modeling the evolution of molecular systems from a mechanistic perspective
Jayson Arley Gutiérrez Betancur
Steven Maere
A1
Journal Article
in
TRENDS IN PLANT SCIENCE
2014
Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution
Kevin Vanneste
Steven Maere
Yves Van de Peer
A1
Journal Article
in
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
2014
The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants
Astrid Gadeyne
Clara Sánchez-Rodríguez
Steffen Vanneste
Simone Di Rubbo
Henrik Zauber
Kevin Vanneste
Jelle Van Leene
Nancy De Winne
Dominique Eeckhout
Geert Persiau
et al.
A1
Journal Article
in
CELL
2014
The evolutionary significance of gene and genome duplications
Kevin Vanneste
Yves Van de Peer
Steven Maere
Dissertation
2014
Transcriptome-based predictive modeling approaches in Arabidopsis thaliana
Rahul Bhosale
Steven Maere
Lieven De Veylder
Dissertation
2014
2013
Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants
Riet De Smet
Keith L Adams
Klaas Vandepoele
Marc Van Montagu
Steven Maere
Yves Van de Peer
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2013
Inference of genome duplications from age distributions revisited
Kevin Vanneste
Yves Van de Peer
Steven Maere
A1
Journal Article
in
MOLECULAR BIOLOGY AND EVOLUTION
2013
Predicting gene function from uncontrolled expression variation among individual wild-type Arabidopsis plants
Rahul Bhosale
Jeremy B Jewell
Jens Hollunder
Abraham JK Koo
Marnik Vuylsteke
Tom Michoel
Pierre Hilson
Alain Goossens
Gregg A Howe
John Browse
et al.
A1
Journal Article
in
PLANT CELL
2013
Significance and biological consequences of polyploidization in land plant evolution
Jeffrey Fawcett
Yves Van de Peer
Steven Maere
Bookchapter
in
Physical structure, behaviour and evolution of plant genomes
2013
2012
Expansive evolution of the TREHALOSE-6-PHOSPHATE PHOSPHATASE gene family in Arabidopsis
Lies Vandesteene
Lorena Lopez Galvis
Kevin Vanneste
Regina Feil
Steven Maere
Willem Lammens
Filip Rolland
John E Lunn
Nelson Avonce
Tom Beeckman
et al.
A1
Journal Article
in
PLANT PHYSIOLOGY
2012
Gamma paleohexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification
Dries Vekemans
Sebastian Proost
Kevin Vanneste
Heleen Coenen
Tom Viaene
Philip Ruelens
Steven Maere
Yves Van de Peer
Koen Geuten
A1
Journal Article
in
MOLECULAR BIOLOGY AND EVOLUTION
2012
Reconstruction of ancestral metabolic enzymes reveals molecular mechanisms underlying evolutionary innovation through gene duplication
Karin Voordeckers
Chris A. Brown
Kevin Vanneste
Elisa van der Zande
Arnout Voet
Steven Maere
Kevin J. Verstrepen
A1
Journal Article
in
PLOS BIOLOGY
2012
2011
PiNGO: a cytoscape plugin to find candidate genes in biological networks
Michael Smoot
Keiichiro Ono
Trey Ideker
Steven Maere
A1
Journal Article
in
BIOINFORMATICS
2011
2010
2R or not 2R is not the question anymore
Yves Van de Peer
Steven Maere
Axel Meyer
A1
Journal Article
in
NATURE REVIEWS GENETICS
2010
Duplicate retention after small- and large-scale duplications
Steven Maere
Yves Van de Peer
Bookchapter
in
Evolution after gene duplication
2010
Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana
Jelle Van Leene
Jens Hollunder
Dominique Eeckhout
Geert Persiau
Eveline Van De Slijke
Hilde Stals
Gert Van Isterdael
Aurine Verkest
Sandy Neirynck
Yelle Buffel
et al.
A1
Journal Article
in
MOLECULAR SYSTEMS BIOLOGY
2010
2009
Open-ended on-board evolutionary robotics for robot swarms
Guy Baele
Nicolas Bredeche
Evert Haasdijk
Steven Maere
Nico Michiels
Yves Van de Peer
Thomas Schmickl
Christopher Schwarzer
Ronald Thenius
P1
Conference
2009
Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event
Jeffrey Fawcett
Steven Maere
Yves Van de Peer
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2009
The evolutionary significance of ancient genome duplications
Yves Van de Peer
Steven Maere
Axel Meyer
A1
Journal Article
in
Nature Reviews Genetics
2009
2008
Extracting expression modules from perturbational gene expression compendia
Steven Maere
Patrick Van Dijck
Martin Kuiper
A1
Journal Article
in
BMC SYSTEMS BIOLOGY
2008
2007
Integration of biological networks and gene expression data using Cytoscape
Melissa S Cline
Michael Smoot
Ethan Cerami
Allan Kuchinsky
Nerius Landys
Chris Workman
Rowan Christmas
Iliana Avila-Campilo
Michael Creech
Benjamin Gross
et al.
A1
Journal Article
in
NATURE PROTOCOLS
2007
The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth
Delphine Fleury
Kristiina Himanen
Gerda Cnops
Hilde Nelissen
Tommaso Boccardi
Steven Maere
Gerrit Beemster
Pia Neyt
Sylvester Anami
Pedro Robles
et al.
A1
Journal Article
in
PLANT CELL
2007
Validating module network learning algorithms using simulated data
Tom Michoel
Steven Maere
Eric Bonnet
Anagha Joshi
Yvan Saeys
Tim Van den Bulcke
Koenraad Van Leemput
Piet Van Remortel
Martin Kuiper
Kathleen Marchal
et al.
A1
Journal Article
in
BMC BIOINFORMATICS
2007
2006
Development of mathematical methods for modeling biological systems
Steven Maere
Dirk Aeyels
Marc Zabeau
Dissertation
2006
Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
Tineke Casneuf
Stefanie De Bodt
Jeroen Raes
Steven Maere
Yves Van de Peer
A1
Journal Article
in
GENOME BIOLOGY
2006
The gain and loss of genes during 600 million years of vertebrate evolution
Tine Blomme
Klaas Vandepoele
Stefanie De Bodt
Cedric Simillion
Steven Maere
Yves Van de Peer
A1
Journal Article
in
GENOME BIOLOGY
2006
2005
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
Steven Maere
Karel Heymans
Martin Kuiper
A1
Journal Article
in
BIOINFORMATICS
2005
Genome duplication and the origin of angiosperms
Stefanie De Bodt
Steven Maere
Yves Van de Peer
Editorial material
2005
Modeling gene and genome duplications in eukaryotes
Steven Maere
Stefanie De Bodt
Jeroen Raes
Tineke Casneuf
Marc Van Montagu
Martin Kuiper
Yves Van de Peer
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2005